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1.
Protein Expr Purif ; 74(2): 175-80, 2010 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-20600937

RESUMEN

Fructose-1,6-bisphosphatase is one of the key enzymes of the gluconeogenic pathway. It catalyses the hydrolysis of fructose-1,6-bisphosphate to fructose-6-phosphate and inorganic phosphate. Fructose-1,6-bisphosphatase from the extreme thermophilic bacterium Thermus thermophilus has been purified by crystallisation approach. The final well-shaped crystals have been obtained using vapour diffusion sitting-drops in the presence of PEG 400 as the precipitating agent. The initially obtained native twinned crystals diffracted up to 1.2Å resolution. Untwinned crystals used for data collection, however, were grown in the presence of thiomersal. They diffract to 1.8 Å resolution and belong to the space groups I422 with cell dimensions (i) a=b=108.8Å, c=336.3Å showing two molecules in the asymmetric unit, and (ii) a=b=113.7Å, c=151.0Å with one molecule in the asymmetric unit. The crystal structure has been solved by single anomalous dispersion using a 1.9Å resolution. For further biochemical and biophysical investigations recombinant fructose-1,6-bisphosphatase has been produced in Escherichia coli. Both native (dissolved crystals) and recombinant material have been characterised by SDS-PAGE, N-terminal sequencing and MALDI-MS.


Asunto(s)
Fructosa-Bifosfatasa/química , Fructosa-Bifosfatasa/aislamiento & purificación , Thermus thermophilus/enzimología , Secuencia de Aminoácidos , Cristalografía por Rayos X , Fructosa-Bifosfatasa/genética , Fructosa-Bifosfatasa/metabolismo , Datos de Secuencia Molecular , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Thermus thermophilus/metabolismo
2.
Biochemistry (Mosc) ; 75(3): 342-52, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-20370613

RESUMEN

Cytochrome c oxidase of the ba(3)-type from Thermus thermophilus does not interact with cyanide in the oxidized state and acquires the ability to bind heme iron ligands only upon reduction. Cyanide complexes of the reduced heme a(3) in cytochrome ba(3) and in mitochondrial aa(3)-type cytochrome oxidase are similar spectroscopically, but the a(3)(2+)-CN complex of cytochrome ba(3) is strikingly tight. Experiments have shown that the K(d) value of the cytochrome ba(3) complex with cyanide in the presence of reductants of the enzyme binuclear center does not exceed 10(-8) M, which is four to five orders of magnitude less than the K(d) of the cyanide complex of the reduced heme a(3) of mitochondrial cytochrome oxidase. The tightness of the cytochrome ba(3) complex with cyanide is mainly associated with an extremely slow rate of the ligand dissociation (k(off) < or = 10(-7) sec(-1)), while the rate of binding (k(on) ~ 10(2) M(-1).sec(-1)) is similar to the rate observed for the mitochondrial cytochrome oxidase. It is proposed that cyanide dissociation from the cytochrome ba(3) binuclear center might be hindered sterically by the presence of the second ligand molecule in the coordination sphere of Cu(B)(2+). The rate of cyanide binding with the reduced heme a(3) does not depend on pH in the neutral area, but it approaches linear dependence on H+ activity in the alkaline region. Cyanide binding appears to be controlled by protonation of an enzyme group with pK(a) = 8.75.


Asunto(s)
Cianuros/metabolismo , Complejo IV de Transporte de Electrones/metabolismo , Thermus thermophilus/enzimología , Unión Proteica
3.
J Biol Inorg Chem ; 6(7): 663-74, 2001 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-11681700

RESUMEN

The crystal structure of the seven-iron ferredoxin from Thermus thermophilus (FdTt) has been determined at 1.64 A resolution, allowing us to unveil the common mechanisms of thermostabilization within "bacterial-type" ferredoxins. FdTt and other homologous thermophilic seven-iron ferredoxins are smaller than their mesophilic counterparts. Thermostabilizing features are optimized in a minimal structural and functional unit, with an extensive cross-linking of secondary structure elements mediated by improved polar and hydrophobic interactions. Most of the potentially stabilizing features are focused on the vicinity of the functional [3Fe-4S] cluster. The structural [4Fe-4S] cluster is shielded in thermophilic FdTt by an increased number of polar interactions involving the two N-terminal residues. Comparisons with the hyperthermostable ferredoxin from Thermotoga maritima reveal that (1) a reduction in the number of non-glycine residues in strained conformations, (2) improved polar interactions within the common iron-sulfur cluster binding (betaalphabeta)2 motif, and (3) an optimized charge distribution at the protein surface, constitute a common strategy for increasing the thermal stability of these ferredoxins.


Asunto(s)
Ferredoxinas/química , Thermus thermophilus/química , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Cristalografía por Rayos X , Enlace de Hidrógeno , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Homología de Secuencia de Aminoácido
4.
Chembiochem ; 2(3): 180-9, 2001 Mar 02.
Artículo en Inglés | MEDLINE | ID: mdl-11828443

RESUMEN

The structural changes of cytochrome c(552) bound to anionic and hydrophobic clay surfaces have been investigated by Fourier transform infrared spectroscopy. Binding to the anionic surface of montmorillonite is controlled by electrostatic interactions since addition of electrolyte (0.5 mol L(-1) KCl) causes desorption of more than 2/3 of the protein molecules. Electrostatic binding occurs through the back side of the protein (i.e., remote from the heme site) and is associated only with subtle changes of the secondary structure. In contrast, adsorption to the hydrophobic surface of talc leads to a decrease in alpha-helical structure by ca. 5% and an increase in beta-sheet structure by ca. 6%. These structural changes are attributed to a hydrophobic region on the front surface of cytochrome c(552) close to the partially exposed heme edge. This part on the protein surface is identified as the interaction domain for talc and most likely also serves for binding to the natural reaction partner, a ba(3)-oxidase. Fourier transform infrared spectra of cytochrome c(552) and the clay-cytochrome c(552) complexes have been measured as a function of time following dissolution and suspension in deuterated buffer, respectively. A two-dimensional correlation analysis was applied to these spectra to investigate the dynamics of the structural changes in the protein. For both complexes, adsorption and subsequent unfolding processes in the binding domains are faster than the time resolution of the spectroscopic experiments. Thus, the processes that could be monitored are refolding of peptide segments and side chain rearrangements following the adsorption-induced perturbation of the protein structure and the solvation of the adsorbed protein. In each case, side chain alterations of solvent-exposed tyrosine, aspartate, and glutamate residues were observed. For the cytochrome c(552)-talc complex, these changes are followed by a slow refolding of the peptide chain in the binding domain and, subsequently, a further H/D exchange of amide group protons.


Asunto(s)
Grupo Citocromo c/síntesis química , Thermus thermophilus/enzimología , Adsorción , Bentonita , Tampones (Química) , Grupo Citocromo b/metabolismo , Grupo Citocromo c/aislamiento & purificación , Complejo IV de Transporte de Electrones/metabolismo , Excipientes , Enlace de Hidrógeno , Modelos Moleculares , Soluciones , Espectroscopía Infrarroja por Transformada de Fourier , Propiedades de Superficie , Talco
5.
Biochem Biophys Res Commun ; 279(2): 595-601, 2000 Dec 20.
Artículo en Inglés | MEDLINE | ID: mdl-11118331

RESUMEN

Idiopathic inflammatory myopathies are progressive, debilitating muscle diseases. The pathogenesis of these disorders is multifactorial and appears to include mutations of the mitochondrial genome, which are usually indicated by morphological changes of mitochondria. The vast majority of all mitochondrial DNA deletions found are located between the origins of replication in the "major region" between nt5760-nt190. Using long distance PCR and sequencing techniques, we detected deletions which were unusually large (ca. 10500-12800 bp) and show uncommon 5'-breakpoints between nt800 and nt3326. Unlike most other deletions, their breakpoints are far upstream of the "major region." The atypical location of these deletions suggests a different pathomechanism. The impact of the mitochondrial DNA deletions in the pathogenetic cascade remains uncertain.


Asunto(s)
ADN Mitocondrial/genética , Polimiositis/genética , Origen de Réplica/genética , Eliminación de Secuencia , Anciano , Secuencia de Bases , Cartilla de ADN , ADN Mitocondrial/química , ADN Ribosómico/genética , Femenino , Mutación del Sistema de Lectura , Humanos , Inflamación , Persona de Mediana Edad , Datos de Secuencia Molecular , Reacción en Cadena de la Polimerasa , Polimiositis/fisiopatología , ARN Ribosómico 16S/genética , Valores de Referencia
6.
EMBO J ; 19(8): 1766-76, 2000 Apr 17.
Artículo en Inglés | MEDLINE | ID: mdl-10775261

RESUMEN

Cytochrome c oxidase is a respiratory enzyme catalysing the energy-conserving reduction of molecular oxygen to water. The crystal structure of the ba(3)-cytochrome c oxidase from Thermus thermophilus has been determined to 2.4 A resolution using multiple anomalous dispersion (MAD) phasing and led to the discovery of a novel subunit IIa. A structure-based sequence alignment of this phylogenetically very distant oxidase with the other structurally known cytochrome oxidases leads to the identification of sequence motifs and residues that seem to be indispensable for the function of the haem copper oxidases, e.g. a new electron transfer pathway leading directly from Cu(A) to Cu(B). Specific features of the ba(3)-oxidase include an extended oxygen input channel, which leads directly to the active site, the presence of only one oxygen atom (O(2-), OH(-) or H(2)O) as bridging ligand at the active site and the mainly hydrophobic character of the interactions that stabilize the electron transfer complex between this oxidase and its substrate cytochrome c. New aspects of the proton pumping mechanism could be identified.


Asunto(s)
Grupo Citocromo b/química , Complejo IV de Transporte de Electrones/química , Thermus thermophilus/enzimología , Secuencia de Aminoácidos , Animales , Sitios de Unión , Bovinos , Cristalografía por Rayos X , Grupo Citocromo b/metabolismo , Transporte de Electrón , Complejo IV de Transporte de Electrones/metabolismo , Ligandos , Proteínas de la Membrana/química , Modelos Químicos , Modelos Moleculares , Datos de Secuencia Molecular , Oxígeno/química , Conformación Proteica , Estructura Secundaria de Proteína , Protones , Homología de Secuencia de Aminoácido
7.
Protein Sci ; 9(11): 2068-73, 2000 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-11152118

RESUMEN

The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. Deduced from the crystal structure of this enzyme, we discovered the presence of an additional transmembrane helix "subunit IIa" spanning the membrane. The hydrophobic N-terminally blocked protein was isolated in high yield using high-performance liquid chromatography. Its complete amino acid sequence was determined by a combination of automated Edman degradation of both the deformylated and the cyanogen bromide cleaved protein and automated C-terminal sequencing of the native protein. The molecular mass of 3,794 Da as determined by MALDI-MS and by ESI requires the N-terminal methionine to be formylated and is in good agreement with the value calculated from the formylmethionine containing sequence (3,766.5 Da + 28 Da = 3,794.5 Da). This subunit consits of 34 residues forming one helix across the membrane (Lys5-Ala34), which corresponds in space to the first transmembrane helix of subunit II of the cytochrome c oxidases from Paracoccus denitrificans and bovine heart, however, with opposite polarity. It is 35% identical to subunit IV of the ba3-cytochrome oxidase from Natronobacterium pharaonis. The open reading frame encoding this new subunit IIa (cbaD) is located upstream of cbaB in the same operon as the genes for subunit I (cbaA) and subunit II (cbaB).


Asunto(s)
Grupo Citocromo b/química , Complejo IV de Transporte de Electrones/química , Thermus thermophilus/química , Secuencia de Aminoácidos , Animales , Bovinos , Cromatografía Líquida de Alta Presión , Bromuro de Cianógeno/metabolismo , Electroforesis en Gel de Poliacrilamida , Metionina/química , Modelos Genéticos , Modelos Moleculares , Datos de Secuencia Molecular , Miocardio/enzimología , Sistemas de Lectura Abierta , Estructura Terciaria de Proteína , Homología de Secuencia de Aminoácido , Espectrometría de Masa por Ionización de Electrospray , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
8.
Proc Natl Acad Sci U S A ; 96(26): 14718-23, 1999 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-10611279

RESUMEN

We show that the heme-copper terminal oxidases of Thermus thermophilus (called ba(3) and caa(3)) are able to catalyze the reduction of nitric oxide (NO) to nitrous oxide (N(2)O) under reducing anaerobic conditions. The rate of NO consumption and N(2)O production were found to be linearly dependent on enzyme concentration, and activity was abolished by enzyme denaturation. Thus, contrary to the eukaryotic enzyme, both T. thermophilus oxidases display a NO reductase activity (3.0 +/- 0.7 mol NO/mol ba(3) x min and 32 +/- 8 mol NO/mol caa(3) x min at [NO] approximately 50 microM and 20 degrees C) that, though considerably lower than that of bona fide NO reductases (300-4,500 mol NO/mol enzyme x min), is definitely significant. We also show that for ba(3) oxidase, NO reduction is associated to oxidation of cytochrome b at a rate compatible with turnover, suggesting a mechanism consistent with the stoichiometry of the overall reaction. We propose that the NO reductase activity of T. thermophilus oxidases may depend on a peculiar Cu(B)(+) coordination, which may be revealed by the forthcoming three-dimensional structure. These findings support the hypothesis of a common phylogeny of aerobic respiration and bacterial denitrification, which was proposed on the basis of structural similarities between the Pseudomonas stutzeri NO reductase and the cbb(3) terminal oxidases. Our findings represent functional evidence in support of this hypothesis.


Asunto(s)
Evolución Molecular , Óxido Nítrico/metabolismo , Oxidorreductasas/metabolismo , Consumo de Oxígeno , Thermus thermophilus/enzimología , Cobre , Grupo Citocromo b/metabolismo , Complejo IV de Transporte de Electrones/metabolismo , Hemoproteínas/metabolismo , Metaloproteínas/metabolismo , Oxidación-Reducción
9.
Biospectroscopy ; 5(5 Suppl): S53-63, 1999.
Artículo en Inglés | MEDLINE | ID: mdl-10512538

RESUMEN

The ba3 cytochrome oxidase from Thermus thermophilus was studied by resonance Raman spectroscopy. The component spectra of both heme groups were determined by using different excitation wavelengths. In the ferric state the heme a3 group reveals resonance Raman marker bands characteristic for two high spin species with the heme iron in an in-plane and an out-of-plane configuration that reflects a coordination equilibrium. This equilibrium obviously results from protonation of one of the axial ligands that is ascribed to a hydroxide. Coordination by its protonated form, a water molecule, may be too weak to keep the heme iron in the porphyrin plane. The corresponding Fe-OH2 stretching mode was attributed to a weak H/D-sensitive band at 464 cm(-1). The coordination equilibrium not only depends on the pH but is also affected by the buffer, the salt concentration, and the binding of the natural redox partner cytochrome c552. These changes of the coordination equilibrium are attributed to the perturbation of the hydrogen bonding network at the catalytic center that is connected to the protein surface via a relay of hydrogen bonds. Environmental changes at the catalytic site are sensitively reflected by the formyl stretching of heme a3. The unique structural properties of the ba3 oxidase may be related to the unusual proton pump efficiency and heme a3 redox potential.


Asunto(s)
Proteínas Bacterianas/química , Grupo Citocromo b/química , Complejo IV de Transporte de Electrones/química , Espectrometría Raman , Thermus thermophilus/enzimología , Proteínas Bacterianas/aislamiento & purificación , Sitios de Unión , Dominio Catalítico , Grupo Citocromo b/aislamiento & purificación , Complejo IV de Transporte de Electrones/aislamiento & purificación , Hemo/química , Enlace de Hidrógeno , Oxidación-Reducción , Protones
10.
FEBS Lett ; 457(1): 98-102, 1999 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-10486572

RESUMEN

ba3-type cytochrome c oxidase purified from the thermophilic bacterium Thermus thermophilus has been reconstituted in phospholipid vesicles and laser flash-induced generation of a membrane potential by the enzyme has been studied in a microsecond/ms time scale with Ru(II)-tris-bipyridyl complex (RuBpy) as a photoreductant. Flash-induced single electron reduction of the aerobically oxidized ba3 by RuBpy results in two phases of membrane potential generation by the enzyme with tau values of about 20 and 300 microseconds at pH 8 and 23 degrees C. Spectrophotometric experiments show that oxidized ba3 reacts very poorly with hydrogen peroxide or any of the other exogenous heme iron ligands studied like cyanide, sulfide and azide. At the same time, photoreduction of the enzyme by RuBpy triggers the electrogenic reaction with H2O2 with a second order rate constant of approximately 2 x 10(3) M-1 s-1. The data indicate that single electron reduction of ba3 oxidase opens the binuclear center of the enzyme for exogenous ligands. The fractional contribution of the protonic electrogenic phases induced by peroxide in cytochrome ba3 is much less than in bovine oxidase, pointing to a possibility of a different electrogenic mechanism of the ba3 oxidase as compared to the oxidases of the aa3-type.


Asunto(s)
Grupo Citocromo b/metabolismo , Complejo IV de Transporte de Electrones/metabolismo , Thermus thermophilus/enzimología , Catálisis , Relación Dosis-Respuesta a Droga , Peróxido de Hidrógeno/metabolismo , Cinética , Potenciales de la Membrana , Bombas de Protones , Espectrofotometría , Factores de Tiempo
11.
FEBS Lett ; 458(2): 83-6, 1999 Sep 17.
Artículo en Inglés | MEDLINE | ID: mdl-10481041

RESUMEN

The redox dependent changes in the cytochrome c oxidase from bovine heart were studied with a combined electrochemical and FT-IR spectroscopic approach. A direct comparison to the electrochemically induced FT-IR difference spectra of the cytochrome c oxidase from Paracoccus denitrificans reveals differences in the structure and intensity of vibrational modes. These differences are partially attributed to interactions of subunits influencing the heme and protein modes. In the spectral regions characteristic for v(C=O) and v(COO-)s/as modes of protonated and deprotonated Asp and Glu residues, additional signals at 1736, 1602 and 1588 cm-1 are observed. On this basis, the possible involvement of Asp-51, a residue specifically conserved in mammalian oxidase and previously proposed to show redox depended conformational changes in the respective X-ray structures, is critically discussed.


Asunto(s)
Complejo IV de Transporte de Electrones/química , Complejo IV de Transporte de Electrones/metabolismo , Miocardio/enzimología , Paracoccus denitrificans/enzimología , Animales , Bovinos , Óxido de Deuterio/química , Electroquímica , Oxidación-Reducción , Conformación Proteica , Protones , Espectroscopía Infrarroja por Transformada de Fourier , Relación Estructura-Actividad , Agua/química
12.
Biochemistry ; 38(30): 9648-58, 1999 Jul 27.
Artículo en Inglés | MEDLINE | ID: mdl-10423243

RESUMEN

The ba3 cytochrome c oxidase from Thermus thermophilus has been studied with a combined electrochemical, UV/VIS, and FTIR spectroscopic approach. Oxidative electrochemical redox titrations yielded midpoint potentials of Em1= -0.02 +/- 0.01 V and Em2 = 0.16 +/- 0.04 V for heme b and Em1 = 0.13 +/- 0.04 V and Em2 = 0.22 +/- 0.03 V for heme a(3) (vs Ag/AgCl/3 M KCl). Fully reversible electrochemically induced UV/VIS and FTIR difference spectra were obtained for the full potential step from -0. 5 to 0.5 V as well as for the critical potential steps from -0.5 to 0.1 V (heme b is fully oxidized and heme a3 remains essentially reduced) and from 0.1 to 0.5 V (heme b remains oxidized and heme a3 becomes oxidized). The difference spectra thus allow to us distinguish modes coupled to heme b and heme a3. Analogous difference spectra were obtained for the enzyme in D2O buffer for additional assignments. The FTIR difference spectra reveal the reorganization of the polypeptide backbone, perturbations of single amino acids and of hemes b and a3 upon electron transfer to/from the four redox-active centers heme b and a3, as well as CuB and CuA. Proton transfer coupled to redox transitions can be expected to manifest in the spectra. Tentative assignments of heme vibrational modes, of individual amino acids, and of secondary structure elements are presented. Aspects of the uncommon electrochemical and spectroscopic properties of the ba3 oxidase from T. thermophilus are discussed.


Asunto(s)
Grupo Citocromo b/química , Complejo IV de Transporte de Electrones/química , Thermus thermophilus/enzimología , Arginina/química , Ácido Aspártico/química , Tampones (Química) , Óxido de Deuterio/química , Electroquímica , Ácido Glutámico/química , Hemo/análogos & derivados , Hemo/química , Lisina/química , Oxidación-Reducción , Péptidos/química , Fosfatos , Porfirinas/química , Potenciometría , Propionatos/química , Conformación Proteica , Espectrofotometría Ultravioleta , Espectroscopía Infrarroja por Transformada de Fourier , Tirosina/química , Agua/química
13.
Protein Sci ; 8(5): 985-90, 1999 May.
Artículo en Inglés | MEDLINE | ID: mdl-10338009

RESUMEN

Following hints from X-ray data (Ostermeier C et al., 1997, Proc Natl Acad Sci USA 94:10547-10553; Yoshikawa S et al., 1998, Science 280: 1723-1729), chemical evidence is presented from four distantly related cytochrome-c oxidases for the existence of a copperB-coordinated His240-Tyr244) cross-link at the O2-activating Heme Fea3-CuB center in the catalytic subunit 1 of the enzyme. The early evolutionary invention of this unusual structure may have prevented damaging *OH-radical release at e(-)-transfer to dioxygen and thus have enabled O2 respiration.


Asunto(s)
Cobre/química , Complejo IV de Transporte de Electrones/química , Histidina/química , Tirosina/química , Secuencia de Aminoácidos , Animales , Sitios de Unión , Bovinos , Espectrometría de Masas , Modelos Químicos , Modelos Moleculares , Datos de Secuencia Molecular , Consumo de Oxígeno , Paracoccus denitrificans/química
14.
Eur J Biochem ; 261(2): 379-91, 1999 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-10215847

RESUMEN

The interactions of yeast iso-1 cytochrome c with bovine cytochrome c oxidase were studied using cytochrome c variants in which lysines of the binding domain were substituted by alanines. Resonance Raman spectra of the fully oxidized complexes of both proteins reveal structural changes of both the heme c and the hemes a and a3. The structural changes in cytochrome c are the same as those observed upon binding to phospholipid vesicles where the bound protein exists in two conformers, B1 and B2. Whereas the structure of B1 is the same as that of the unbound cytochrome c, the formation of B2 is associated with substantial alterations of the heme pocket. In cytochrome c oxidase, the structural changes in both hemes refer to more subtle perturbations of the immediate protein environment and may be a result of a conformational equilibrium involving two states. These changes are qualitatively different to those observed for cytochrome c oxidase upon poly-l-lysine binding. The resonance Raman spectra of the various cytochrome c/cytochrome c oxidase complexes were analyzed quantitatively. The spectroscopic studies were paralleled by steady-state kinetic measurements of the same protein combinations. The results of the spectra analysis and the kinetic studies were used to determine the stability of the complexes and the conformational equilibria B2/B1 for all cytochrome c variants. The complex stability decreases in the order: wild-type WT > J72K > K79A > K73A > K87A > J72A > K86A > K73A/K79A (where J is the natural trimethyl lysine). This order is not exhibited by the conformational equilibria. The electrostatic control of state B2 formation does not depend on individual intermolecular salt bridges, but on the charge distribution in a specific region of the front surface of cytochrome c that is defined by the lysyl residues at positions 72, 73 and 79. On the other hand, the conformational changes in cytochrome c oxidase were found to be independent of the identity of the bound cytochrome c variant. The maximum rate constants determined from steady-state kinetic measurements could be related to the conformational equilibria of the bound cytochrome c using a simple model that assumes that the conformational transitions are faster than product formation. Within this model, the data analysis leads to the conclusion that the interprotein electron transfer rate constant is around two times higher in state B2 than in B1. These results can be interpreted in terms of an increase of the driving force in state B2 as a result of the large negative shift of the reduction potential.


Asunto(s)
Grupo Citocromo c/química , Complejo IV de Transporte de Electrones/química , Lisina/química , Alanina/química , Animales , Sitios de Unión , Bovinos , Grupo Citocromo c/genética , Transporte de Electrón , Hemo/química , Cinética , Modelos Moleculares , Mutación , Fosfolípidos/metabolismo , Polilisina/metabolismo , Conformación Proteica , Espectrometría Raman
15.
Biochemistry ; 38(3): 1057-65, 1999 Jan 19.
Artículo en Inglés | MEDLINE | ID: mdl-9894002

RESUMEN

The kinetic properties of the ba3 oxidase from Thermus thermophilus were investigated by stopped-flow spectroscopy in the temperature range of 5-70 degrees C. Peculiar behavior in the reaction with physiological substrates and classical ligands (CO and CN-) was observed. In the O2 reaction, the decay of the F intermediate is significantly slower (k' = 100 s-1 at 5 degrees C) than in the mitochondrial enzyme, with an activation energy E of 10.1 +/- 0.9 kcal mol-1. The cyanide-inhibited ba3 oxidizes cyt c522 quickly (k approximately 5 x 10(6) M-1 s-1 at 25 degrees C) and selectively, with an activation energy E of 10.9 +/- 0.9 kcal mol-1, but slowly oxidizes ruthenium hexamine, a fast electron donor for the mitochondrial enzyme. Cyt c552 oxidase activity is enhanced up to 60 degrees C and is maximal at extremely low ionic strengths, excluding formation of a high-affinity cyt c522-ba3 electrostatic complex. The thermophilic oxidase is less sensitive to cyanide inhibition, although cyanide binding under turnover is much quicker (seconds) than in the fully oxidized state (days). Finally, the affinity of reduced ba3 for CO at 20 degrees C (Keq = 1 x 10(5) M-1) was found to be smaller than that of beef heart aa3 (Keq = 4 x 10(6) M-1), partly because of an unusually fast, strongly temperature-dependent CO dissociation from cyt a32+ of ba3 (k' = 0.8 s-1 vs k' = 0.02 s-1 for beef heart aa3 at 20 degrees C). The relevance of these results to adaptation of respiratory activity to high temperatures and low environmental O2 tensions is discussed.


Asunto(s)
Grupo Citocromo b/química , Complejo IV de Transporte de Electrones/química , Temperatura , Thermus thermophilus/enzimología , Sitios de Unión , Monóxido de Carbono/química , Grupo Citocromo b/antagonistas & inhibidores , Transporte de Electrón , Complejo IV de Transporte de Electrones/antagonistas & inhibidores , Activación Enzimática , Inhibidores Enzimáticos/farmacología , Cinética , Concentración Osmolar , Oxígeno/química , Polarografía , Cianuro de Sodio/farmacología , Espectrofotometría , Análisis Espectral
16.
Biospectroscopy ; 4(6): 365-77, 1998.
Artículo en Inglés | MEDLINE | ID: mdl-9851718

RESUMEN

The terminal caa3 oxidase of Thermus thermophilus has been studied by resonance Raman spectroscopy. Using different excitation wavelengths in the Soret band region, it was possible to disentangle the resonance Raman spectra of the fully oxidized and fully reduced state in terms of the component spectra of the individual hemes a, a3, and c. For the heme a and a3 groups, the spectra reveal only minor differences compared to those of beef heart cytochrome c oxidase attributable to subtle modifications of the heme environment. These differences are not more pronounced than those between the oxidases from beef heart and Paracoccus denitrificans confirming the view that this oxidase of Th. thermophilus is a typical member of the aa3 oxidase superfamily. The heme c component spectra display far-reaching similarities with those of c-type cytochromes which serve as mobile electron carriers in the respiratory chain. These results imply that caa3 oxidase represents an integrated version of the noncovalent redox complex between cytochrome c and cytochrome c oxidase in higher organisms. On the other hand, the structural changes of cytochrome c in the noncovalent complex have no counterpart in the heme c component of the caa3 oxidase indicating a specific cytochrome c binding site for the mitochondrial enzyme.


Asunto(s)
Citocromos c , Complejo IV de Transporte de Electrones/química , Hemo/química , Proteínas de Saccharomyces cerevisiae , Espectrometría Raman , Thermus thermophilus/enzimología , Grupo Citocromo c/química , Grupo Citocromo c/metabolismo , Complejo IV de Transporte de Electrones/metabolismo , Hemo/metabolismo , Oxidación-Reducción , Conformación Proteica
17.
FEBS Lett ; 434(1-2): 17-22, 1998 Aug 28.
Artículo en Inglés | MEDLINE | ID: mdl-9738443

RESUMEN

Several amino acid residues that have been shown to be essential for proton transfer in most cytochrome c oxidases are not conserved in the ba3-type cytochrome c oxidase from the thermophilic eubacterium Thermus thermophilus. So far, it has been unclear whether the Th. thermophilus ba3-type cytochrome c oxidase can nevertheless function as an electrogenic proton pump. In this study, we have combined charge translocation measurements on a lipid bilayer with two independent methods of proton pumping measurements to show that enzymatic turnover of the Th. thermophilus cytochrome c oxidase is indeed coupled to the generation of an electrocurrent and proton pumping across the membrane. In addition to a 'vectorial' consumption of 1.0 H+/e- for water formation, proton pumping with a stoichiometry of 0.4-0.5 H+/e- was observed. The implications of these findings for the mechanism of redox-coupled proton transfer in this unusual cytochrome c oxidase are discussed.


Asunto(s)
Complejo IV de Transporte de Electrones/fisiología , Thermus thermophilus/fisiología , Secuencia de Aminoácidos , Datos de Secuencia Molecular , Protones , Alineación de Secuencia , Análisis de Secuencia , Electricidad Estática
18.
Anal Biochem ; 256(2): 192-9, 1998 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-9473277

RESUMEN

Matrix-assisted laser desorption/ionization-mass spectra (MALDI-MS) are obtained from entire bovine heart (H) and liver (L) cytochrome c oxidase membrane protein complexes. Molecular masses of most of the subunits are in excellent agreement with the published sequences. Some corrections are necessary for the nuclear coded subunit IX, which is N-acetylated, and X, with a corrected C-terminal peptide sequence. The mass values of two of the three tissue-specific subunits (VIII-L and X-L) are not in agreement with the DNA-deduced sequences and have been corrected by protein sequencing. For the investigation of the cysteine status 7-diethyl-amino-3-(4'-maleimidylphenyl)-4-methylcoumarin proved to be an excellent site-specific reagent. MALDI-MS with the SH-reacted enzyme indicates disulfide bridges only in subunit VII and a distorted tetrahedral S coordination of the zinc in subunit VI.


Asunto(s)
Complejo IV de Transporte de Electrones/análisis , Isoenzimas/análisis , Proteínas de la Membrana/análisis , Complejos Multienzimáticos/análisis , Compuestos de Sulfhidrilo/análisis , Animales , Bovinos , Complejo IV de Transporte de Electrones/química , Electroforesis en Gel de Poliacrilamida , Membranas Intracelulares/enzimología , Isoenzimas/química , Proteínas de la Membrana/química , Mitocondrias Cardíacas/enzimología , Mitocondrias Hepáticas/enzimología , Peso Molecular , Complejos Multienzimáticos/química , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
19.
J Mol Biol ; 271(4): 629-44, 1997 Aug 29.
Artículo en Inglés | MEDLINE | ID: mdl-9281430

RESUMEN

The three-dimensional structure of cytochrome-c552 from Thermus thermophilus has been determined by the multiple anomalous dispersion technique using synchrotron radiation and refined to a resolution of 1.28 A. Data collection at 90 K and the recording of three data sets (f'-minimum: 7125 eV, f"-maximum: 7138 eV and reference for scaling: 10,077 eV) resulted in an initial electron density of very high quality at 2.1 A, which was readily interpretable for model building. The model was refined to an R value of 19.1% (Rfree=22.4%) at 1.28 A resolution using a fourth data set collected at a photon energy of 11,810 eV. Comparison of this thermophilic cytochrome with its mesophilic mitochondrial or bacterial counterparts reveals significant structural differences which are discussed with respect to their importance for thermostability and binding between this cytochrome and its corresponding ba3-oxidase. Amino acid sequence similarities to other class I cytochromes are very weak and entirely limited to the region around the CXXCH motif close to the N terminus. The N-terminal two-thirds of cytochrome-c552 cover spatial regions around the heme prosthetic group that are similar to those observed for other cytochromes. The actual secondary structural elements that are responsible for that shielding do not, however, correlate well to other structures. Only the N-terminal helix (containing the heme binding cysteine residues) aligns reasonably well with other class I cytochromes. The most striking differences that distinguish the present structure from all other class I cytochromes is the C-terminal one-third of the molecule that wraps around the remainder of the structure as a stabilizing clamp, the existence of an extended beta-sheet covering one edge of the heme and the lack of any internal water molecule.


Asunto(s)
Grupo Citocromo c/ultraestructura , Thermus thermophilus/enzimología , Proteínas Bacterianas/química , Proteínas Bacterianas/ultraestructura , Cristalografía por Rayos X/métodos , Grupo Citocromo c/química , Electroquímica , Complejo IV de Transporte de Electrones/metabolismo , Hemoproteínas/química , Hemoproteínas/ultraestructura , Calor , Modelos Moleculares , Unión Proteica , Desnaturalización Proteica , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Solubilidad , Relación Estructura-Actividad , Propiedades de Superficie
20.
Biochem Biophys Res Commun ; 237(3): 572-6, 1997 Aug 28.
Artículo en Inglés | MEDLINE | ID: mdl-9299406

RESUMEN

The eubacterium Thermus thermophilus expresses terminal oxidases of the ba3- and caa3-type. The soluble cytochrome-c552 of this organism has been isolated by a new method and characterized. In contrast to previous studies, but in line with coexpression at low aeration, the cytochrome was unambiguously identified as the substrate of the ba3-oxidase. In the presence of TMPD and ascorbate, biphasic Eadie-Hofstee plots with kmax = 250 s-1 at 25 degrees C are observed upon addition of cytochrome-c552. Surprisingly, the caa3-oxidase with its single covalently bound cytochrome-c also exhibits a biphasic redox activity with kmax = 185 s-1 in the presence of TMPD and ascorbate only. Further addition of cytochrome-c552 does not lead to enhanced activity. Crystals of cytochrome-c552 were obtained by vapor diffusion using the sitting-drop method in the presence of ammonium sulfate as precipitant. They diffract to 1.28 A resolution using synchrotron radiation. The structure has been solved by MAD phasing.


Asunto(s)
Grupo Citocromo c/química , Secuencia de Aminoácidos , Ácido Ascórbico/farmacología , Cromatografía en Gel , Cromatografía por Intercambio Iónico , Cristalización , Cristalografía por Rayos X , Grupo Citocromo b/metabolismo , Grupo Citocromo c/aislamiento & purificación , Grupo Citocromo c/metabolismo , Complejo IV de Transporte de Electrones/metabolismo , Fermentación , Especificidad por Sustrato , Thermus thermophilus/química , Thermus thermophilus/crecimiento & desarrollo , Ultrafiltración
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