Endophytic bacteria from Piper tuberculatum Jacq.: isolation, molecular characterization, and in vitro screening for the control of Fusarium solani f. sp piperis, the causal agent of root rot disease in black pepper (Piper nigrum L.).

Endophytic bacteria have been found to colonize internal tissues in many different plants, where they can have several beneficial effects, including defense against pathogens. In this study, we aimed to identify endophytic bacteria associated with roots of the tropical piperaceae Piper tuberculatum, which is known for its resistance to infection by Fusarium solani f. sp piperis, the causal agent of black pepper (Piper nigrum) root rot disease in the Amazon region. Based on 16S rRNA gene sequence analysis, we isolated endophytes belonging to 13 genera: Bacillus, Paenibacillus, Pseudomonas, Enterobacter, Rhizobium, Sinorhizobium, Agrobacterium, Ralstonia, Serratia, Cupriavidus, Mitsuaria, Pantoea, and Staphylococcus. The results showed that 56.52% of isolates were associated with the phylum Proteobacteria, which comprised α, ß, and γ classes. Other bacteria were related to the phylum Firmicutes, including Bacillus, which was the most abundant genus among all isolates. Antagonistic assays revealed that Pt12 and Pt13 isolates, identified as Pseudomonas putida and Pseudomonas sp, respectively, were able to inhibit F. solani f. sp piperis growth in vitro. We describe, for the first time, the molecular identification of 23 endophytic bacteria from P. tuberculatum, among which two Pseudomonas species have the potential to control the pathogen responsible for root rot disease in black pepper in the Amazon region.

First Report of Mango Dieback Caused by Pseudofusicoccum stromaticum in Brazil.

From September to December 2010, mango (Mangifera indica L.) stems showing dieback symptoms were collected during a survey conducted in São Francisco Valley, northeastern Brazil. Small pieces (4 to 5 mm) of necrotic tissues were surface sterilized for 1 min in 1.5% NaOCl, washed twice with sterile distilled water, and plated onto potato dextrose agar (PDA) amended with 0.5 g liter-1 streptomycin sulfate. Plates were incubated at 25°C in the dark for 14 to 21 days and colonies that were morphologically similar to species of Botryosphaeriaceae were transferred to PDA. Colonies developed a compact mycelium that was initially white, but becoming gray dark after 4 to 6 days of incubation at 25°C in darkness. Identification was made using morphological characteristics and DNA based molecular techniques. Pycnidia were obtained on 2% water agar with sterilized pine needles as substratum after 3 weeks of incubation at 25°C under near-UV light. Pycnidia were large, multilocular, eustromatic, covered with hyphae; locule totally embedded without ostioles, locule walls consisting of a dark brown textura angularis, becoming thinner and hyaline toward the conidiogenous region. Conidia were hyaline, thin to slightly thickened walled, aseptate, with granular contents, bacilliform, straight to slightly curved, apex and base both bluntly rounded or just blunt, 15.6 to 25.0 (20.8) µm long, and 2.7 to 7.9 (5.2) µm wide, length/width = 4.00. According to these morphological characteristics, three isolates (CMM1364, CMM1365, and CMM1450) were identified as Pseudofusicoccum stromaticum (1,3,4). PCR amplification by universal primers (ITS4/ITS5) and DNA sequencing of the internal transcribed spacer (ITS1-5.8S-ITS2 rRNA gene cluster) were conducted to confirm the identifications through BLAST searches in GenBank. The isolates were 100% homologous with P. stromaticum (3) (GenBank Accession Nos. AY693974 and DQ436935). Representative sequences of the isolates were deposited in GenBank (Accession Nos. JF896432, JF966392, and JF966393). Pathogenicity tests were conducted with the P. stromaticum strains on 5-month-old mango seedlings (cv. Tommy Atkins). Mycelial plugs taken from the margin of actively growing colonies (PDA) of each isolate were applied in shallow wounds (0.4 cm in diameter) on the stem (center) of each plant. Inoculation wounds were wrapped with Parafilm. Control seedlings received sterile PDA plugs. Inoculated and control seedlings (five each) were kept in a greenhouse at 25 to 30°C. After 5 weeks, all inoculated seedlings showed leaf wilting, drying out of the branches, and necrotic lesions in the stems. No symptoms were observed in the control plants. P. stromaticum was successfully reisolated from symptomatic plants to fulfill Koch's postulates. P. stromaticum was described from Acacia, Eucalyptus, and Pinus trees in Venezuela (3,4), and there are no reports of this fungus in other hosts (2). To our knowledge, this is the first report of P. stromaticum causing mango dieback in Brazil and worldwide. References: (1) P. W. Crous et al. Stud. Mycol. 55:235, 2006. (2) D. F. Farr and A. Y. Rossman. Fungal Databases. Systematic Mycology and Microbiology Laboratory, ARS, USDA. Retrieved from http://nt.ars-grin.gov/fungaldatabases/ , 18 May 2011. (3) S. Mohali et al. Mycol. Res. 110:405, 2006. (4) S. R. Mohali et al. Fungal Divers. 25:103, 2007.

Mercury toxicity in the Amazon: contrast sensitivity and color discrimination of subjects exposed to mercury.

We measured visual performance in achromatic and chromatic spatial tasks of mercury-exposed subjects and compared the results with norms obtained from healthy individuals of similar age. Data were obtained for a group of 28 mercury-exposed subjects, comprising 20 Amazonian gold miners, 2 inhabitants of Amazonian riverside communities, and 6 laboratory technicians, who asked for medical care. Statistical norms were generated by testing healthy control subjects divided into three age groups. The performance of a substantial proportion of the mercury-exposed subjects was below the norms in all of these tasks. Eleven of 20 subjects (55%) performed below the norms in the achromatic contrast sensitivity task. The mercury-exposed subjects also had lower red-green contrast sensitivity deficits at all tested spatial frequencies (9/11 subjects; 81%). Three gold miners and 1 riverine (4/19 subjects, 21%) performed worse than normal subjects making more mistakes in the color arrangement test. Five of 10 subjects tested (50%), comprising 2 gold miners, 2 technicians, and 1 riverine, performed worse than normal in the color discrimination test, having areas of one or more MacAdam ellipse larger than normal subjects and high color discrimination thresholds at least in one color locus. These data indicate that psychophysical assessment can be used to quantify the degree of visual impairment of mercury-exposed subjects. They also suggest that some spatial tests such as the measurement of red-green chromatic contrast are sufficiently sensitive to detect visual dysfunction caused by mercury toxicity.

Mercury toxicity in the Amazon: contrast sensitivity and color discrimination of subjects exposed to mercury

We measured visual performance in achromatic and chromatic spatial tasks of mercury-exposed subjects and compared the results with norms obtained from healthy individuals of similar age. Data were obtained for a group of 28 mercury-exposed subjects, comprising 20 Amazonian gold miners, 2 inhabitants of Amazonian riverside communities, and 6 laboratory technicians, who asked for medical care. Statistical norms were generated by testing healthy control subjects divided into three age groups. The performance of a substantial proportion of the mercury-exposed subjects was below the norms in all of these tasks. Eleven of 20 subjects (55 percent) performed below the norms in the achromatic contrast sensitivity task. The mercury-exposed subjects also had lower red-green contrast sensitivity deficits at all tested spatial frequencies (9/11 subjects; 81 percent). Three gold miners and 1 riverine (4/19 subjects, 21 percent) performed worse than normal subjects making more mistakes in the color arrangement test. Five of 10 subjects tested (50 percent), comprising 2 gold miners, 2 technicians, and 1 riverine, performed worse than normal in the color discrimination test, having areas of one or more MacAdam ellipse larger than normal subjects and high color discrimination thresholds at least in one color locus. These data indicate that psychophysical assessment can be used to quantify the degree of visual impairment of mercury-exposed subjects. They also suggest that some spatial tests such as the measurement of red-green chromatic contrast are sufficiently sensitive to detect visual dysfunction caused by mercury toxicity.

Towards the identification of cassava root protein genes.

The protein population of cassava root layers was characterized by SDS-PAGE and bidimensional polyacrylamide gel electrophoresis. SDS-Page revealed the presence of a protein population in the molecular weight range between 94 and 20 kDa. The expression pattern of these proteins was well-defined within the different layers. Partial protein sequence analyses and preliminary results on the layer-specific expression pattern obtained with Northern analyses are presented.