Old but still good: genetic diversity of ancient pecan genotypes from southern Brazil.

Pecan [Carya illinoinensis (Wangenh.) K. Koch] is a crop fruit native to the USA and Mexico currently cultivated in several countries, including Brazil, Uruguay, Argentina, Chile, Peru, China, South Africa, and Australia. Supported by the increasing consumption and market prices, the interest in the cultivation of this fruit crop is strongly growing around the world. In this study, AFLP and S-SAP markers were employed to characterize the genetic diversity of ancient accessions of pecan from southern Brazil. The evaluated plants were selected and preserved by the farmers and are remnants of the first introduction of seedlings from the U.S.A into southern Brazil aiming at developing research towards establishing commercial orchards. High levels of genetic diversity were estimated, suggesting that these plants have an important genetic background for the establishment of a germplasm collection with a wide genetic basis, for the development of breeding programs for this fruit crop. Cluster analysis of the genetic datasets revealed some correlation between the nuts' morphometric traits and genetic markers. Such correlation should be further exploited. These ancient genotypes must be evaluated for other agronomic traits of interest and included in core collections of pecans.

Patterns of genetic diversity, spatial genetic structure and gene flow in Campomanesia xanthocarpa: insights from SSR markers of different genomic origins.

Campomanesia xanthocarpa (Mart.) O. Berg is a South American fruit tree species with important ecological and medicinal properties, which remnants are currently found mainly in isolated forest fragments. In this study, SSR markers from three different genomic origins (gene-linked, nuclear neutral, and organellar) were used to evaluate the patterns of genetic diversity, fine-scale spatial genetic structure and historical gene flow in fragmented forest formations of C. xanthocarpa from the Atlantic Forest in southern Brazil. Our results show that the forest fragments present moderate to high levels of genetic diversity in comparison to species presenting similar life traits, although a trend opposite to expected was observed concerning gene-linked and neutral SSR markers. The fine-scale spatial genetic structure revealed different patterns in short and large distance classes, with a distinct influence of gene-linked and neutral markers in driving the genetic structure in each distance class. The presence of an isolation-by-adaptation pattern implies the need for maintenance of the current remnants to assure the conservation of the private alleles. Finally, as the genetic diversity is found predominantly within forest fragments, programs of seed collection and/or genetic rescue should prioritize a larger number of individuals within each fragment, to increase the sampled diversity.

Serendipita restingae sp. nov. (Sebacinales): an orchid mycorrhizal agaricomycete with wide host range.

The Serendipitaceae family was erected in 2016 to accommodate the Sebacinales 'group B' clade, which contains peculiar species of cultivable root-associated fungi involved in symbiotic associations with a wide range of plant species. Here we report the isolation of a new Serendipita species which was obtained from protocorms of the terrestrial orchid Epidendrum fulgens cultivated in a greenhouse. This species is described based on phylogenetic analysis and on its microscopic and ultrastructural features in pure culture and in association with the host's protocorms. Its genome size was estimated using flow cytometry, and its capacity to promote the germination of E. fulgens seeds and to associate with roots of Arabidopsis thaliana was also investigated. Serendipita restingae sp. nov. is closely related to Serendipita sp. MAFF305841, isolated from Microtis rara (Orchidaceae), from which it differs by 14.2% in the ITS region and by 6.5% in the LSU region. It produces microsclerotia formed of non-monilioid hyphae, a feature that was not reported for the Sebacinales hitherto. Serendipita restingae promoted the germination of E. fulgens seeds, forming typical mycorrhizal pelotons within protocorm cells. It was also able to colonize the roots of Arabidopsis thaliana under in vitro conditions. Arabidopsis plants grown in association with S. restingae increased their biomass more than fourfold. Serendipita restingae is the first Serendipitaceae species described for the Americas.

Conservation of Forest Biodiversity: how sample size affects the estimation of genetic parameters.

Efficient designs are crucial for population genetic studies on forest species. In this study we employed individual based simulations aiming to evaluate what fraction of a population should be sampled to obtain confident estimations of allelic richness and of inbreeding coefficient in population genetic surveys. The simulations suggest that at least 10% of the total population has to be sampled to ensure reliable estimations of allelic richness and inbreeding coefficient. This approach will allow the confidence of the genetic parameters estimations of a larger number of populations, based on a minimal sample within each one.

Histological features, starch accumulation and sprouting in the early root development of Jacaranda ulei (Bignoniaceae).

The plant species occurring in the savanna region of the Cerrado biome in Brazil present typical morphological and physiological adaptations to a dry climate with seasonal occurrence of wildfires. In this study, the histological features of the root system, the main sites of synthesis and storage of starch and the initial phases of the bud development were characterized in Jacaranda ulei. The anatomical features observed in the root system of J. ulei are related to the needs of the species to survive in the Cerrado. The histochemical analyses demonstrated high synthesis of glucose and glycoprotein after the third day of in vitro culture, in the proximal cells of the cortical parenchyma of the exoderm. Meristematic primordia were observed in the ninth day and the beginning of the meristem formation was observed after 21 days of in vitro culture. Jacaranda ulei displays morphological, anatomical and storage features typical from resprouter species. However, it may be vulnerable to unsustainable exploitation. Considering the importance of this species for local people, more studies regarding its therapeutic properties should be performed, including the planning of appropriate programs for the species management and the production of selected clones through in vitro micropropagation.

Ultra-low temperature conservation of Brazilian pine embryogenic cultures.

This study aimed to establish a cryopreservation protocol for embryogenic cultures of A. angustifolia, enabling the ex situ conservation of the species. Embryogenic cultures were established from immature seeds and treated with variations of the cryoprotectant solutions SuDG, SoD and PVS2 prior to immersion in liquid nitrogen. Cell viability was evaluated after 30, 60 and 90 days of re-growth. The highest re-growth without morphological alterations and with normal biochemical composition was obtained with the PVS2 solution with 40 min immersion in ethanol (-20 °C). This procedure opens new horizons for the ex situ conservation of the species genetic.

Monoicy in A. angustifolia (Bert. ) O. Kuntze (Araucariaceae): I. Morphological aspects of the reproductive structures

Araucaria angustifolia (Bert.) O. Kuntze is a dioecious conifer species native of Brazil. The rare occurrence of monoiceous specimens have been attributed to pathogenic infections or other injuries in adult trees. Here, the morphological characteristics of male and female cones and pollen grains of a monoiceous A. angustifolia are described. Male and female cones and pollen grains presented normal morphology, lacking any sort of injuries or infection and suggesting the existence of further grounds for the occurrence of monoicy in this conifer species.

Araucaria angustifolia (Bert.) O. Kuntze é uma conífera primariamente dióica nativa do Brasil. A ocorrência de raros exemplares monóicos tem sido creditada a infecções patogênicas ou outras injúrias em árvores adultas. Neste trabalho, as características morfológicas de cones masculinos e femininos e dos grãos de pólen de uma A. angustifolia monóica são descritas. Os cones masculinos e femininos e os grãos de pólen apresentaram morfologia normal, se a presença de qualquer tipo de injuria ou infecção, sugerindo a existência de outros mecanismos para a ocorrência de monoicia nesta conífera.

Monoicy in A. angustifolia (Bert.) O. Kuntze (Araucariaceae): I. Morphological aspects of the reproductive structures.

Araucaria angustifolia (Bert.) O. Kuntze is a dioecious conifer species native of Brazil. The rare occurrence of monoiceous specimens have been attributed to pathogenic infections or other injuries in adult trees. Here, the morphological characteristics of male and female cones and pollen grains of a monoiceous A. angustifolia are described. Male and female cones and pollen grains presented normal morphology, lacking any sort of injuries or infection and suggesting the existence of further grounds for the occurrence of monoicy in this conifer species.

Evidences of delayed size recovery in Araucaria angustifolia populations after post-glacial colonization of highlands in Southeastern Brazil.

Up to date, little is known about the relationship between historical demography and the current genetic structure of A. angustifolia. As a first effort towards overcoming this lack, microsatellite data scored in six populations and isozyme allele frequencies published for 11 natural stands of this species were analysed in order to assess molecular signatures of populations' demographic history. Signatures of genetic bottlenecks were captured in all analysed populations of southeastern Brazil. Among southern populations, signatures of small effective population size were observed in only three out of 13 populations. Southern populations likely experienced faster recovery of population size after migration onto highlands. Accordingly, current genetic diversity of the southern populations gives evidence of fast population size recovery. In general, demographic history of A. angustifolia matches climatic dynamics of southern and southeastern Brazil during the Pleistocene and Holocene. Palynological records and reconstruction of the past climatic dynamics of southeastern and southern Brazil support the hypothesis of different population size recovery dynamics for populations from these regions.

Evidences of delayed size recovery in Araucaria angustifolia populations after post-glacial colonization of highlands in Southeastern Brazil

Up to date, little is known about the relationship between historical demography and the current genetic structure of A. Angus As a first effort towards overcoming this lack, microsatellite data scored in six populations and isozyme allele frequencies published for 11 natural stands of this species were analysed in order to assess molecular signatures of populations' demographic history. Signatures of genetic bottlenecks were captured in all analysed populations of southeastern Brazil. Among southern populations, signatures of small effective population size were observed in only three out of 13 populations. Southern populations likely experienced faster recovery of population size after migration onto highlands. Accordingly, current genetic diversity of the southern populations gives evidence of fast population size recovery. In general, demographic history of A. Angusmatches climatic dynamics of southern and southeastern Brazil during the Pleistocene and Holocene. Palynological records and reconstruction of the past climatic dynamics of southeastern and southern Brazil support the hypothesis of different population size recovery dynamics for populations from these regions.

Até o momento, pouco se conhece sobre a relação entre história demográfica e a presente estrutura genética da A. Angus Como uma primeira tentativa em transpor esta deficiência, dados de microssatélites coletados em seis populações e freqüências alélicas de isoenzimas publicadas para 11 populações naturais desta espécie foram analisadas com o objetivo de acessar assinaturas moleculares da história demográfica populacional. Assinaturas de gargalos genéticos foram capturadas em todas as populações analisadas provenientes do Sudeste do Brasil. Entre as populações do Sul, assinaturas de pequeno tamanho populacional efetivo foram observadas em somente três entre 13 populações. Populações do Sul provavelmente apresentaram uma rápida recuperação do tamanho efetivo após a migração para os planaltos. Em acordança, a presente diversidade genética das populações do Sul apresenta evidências de uma rápida recuperação do tamanho populacional. Em geral, a história demográfica da A. Angus concorda com as dinâmicas climáticas do Sul e Sudeste do Brasil durante o Pleistoceno e o Holoceno. Estudos palinológicos e reconstrução de dinâmicas climáticas do Sul e Sudeste do Brasil suportam a hipótese de diferentes dinâmicas de recuperação do tamanho populacional em populações destas regiões.