Considering humans as habitat reveals evidence of successional disease ecology among human pathogens.

The realization that ecological principles play an important role in infectious disease dynamics has led to a renaissance in epidemiological theory. Ideas from ecological succession theory have begun to inform an understanding of the relationship between the individual microbiome and health but have not yet been applied to investigate broader, population-level epidemiological dynamics. We consider human hosts as habitat and apply ideas from succession to immune memory and multi-pathogen dynamics in populations. We demonstrate that ecologically meaningful life history characteristics of pathogens and parasites, rather than epidemiological features alone, are likely to play a meaningful role in determining the age at which people have the greatest probability of being infected. Our results indicate the potential importance of microbiome succession in determining disease incidence and highlight the need to explore how pathogen life history traits and host ecology influence successional dynamics. We conclude by exploring some of the implications that inclusion of successional theory might have for understanding the ecology of diseases and their hosts.

Dataset of seized wildlife and their intended uses.

The illegal wildlife trade (IWT) threatens conservation and biosecurity efforts. The Internet has greatly facilitated the trade of wildlife, and researchers have increasingly examined the Internet to uncover illegal trade. However, most efforts to locate illegal trade on the Internet are targeted to one or few taxa or products. Large-scale efforts to find illegal wildlife on the Internet (e-commerce, social media, dark web) may be facilitated by a systematic compilation of illegally traded wildlife taxa and their uses. Here, we provide such a dataset. We used seizure records from three global wildlife trade databases to compile the identity of seized taxa along with their intended usage (i.e., use-type). Our dataset includes c. 4.9k distinct taxa representing c. 3.3k species and contains c. 11k taxa-use combinations from 110 unique use-types. Further, we acquired over 45k common names for seized taxa from over 100 languages. Our dataset can be used to conduct large-scale broad searches of the Internet to find illegally traded wildlife. Further, our dataset can be filtered for more targeted searches of specific taxa or derived products.

The International Vertebrate Pet Trade Network and Insights from US Imports of Exotic Pets.

The international trade in exotic vertebrate pets provides key social and economic benefits but also drives associated ecological, ethical, and human health impacts. However, despite its clear importance, we currently lack a full understanding of the structure of the pet trade, hampering efforts to optimize its benefits while mitigating its negative effects. In the present article, we represent and review the structure of the pet trade as a network composed of different market actors (nodes) and trade flows (links). We identify key data gaps in this network that, if filled, would enable network analyses to pinpoint targets for management. As a case study of how data-informed networks can realize this goal, we quantified spatial and temporal patterns in pets imported to the United States. Our framework and case study illustrate how network approaches can help to inform and manage the effects of the growing demand for exotic pets.

Text classification to streamline online wildlife trade analyses.

Automated monitoring of websites that trade wildlife is increasingly necessary to inform conservation and biosecurity efforts. However, e-commerce and wildlife trading websites can contain a vast number of advertisements, an unknown proportion of which may be irrelevant to researchers and practitioners. Given that many wildlife-trade advertisements have an unstructured text format, automated identification of relevant listings has not traditionally been possible, nor attempted. Other scientific disciplines have solved similar problems using machine learning and natural language processing models, such as text classifiers. Here, we test the ability of a suite of text classifiers to extract relevant advertisements from wildlife trade occurring on the Internet. We collected data from an Australian classifieds website where people can post advertisements of their pet birds (n = 16.5k advertisements). We found that text classifiers can predict, with a high degree of accuracy, which listings are relevant (ROC AUC ≥ 0.98, F1 score ≥ 0.77). Furthermore, in an attempt to answer the question 'how much data is required to have an adequately performing model?', we conducted a sensitivity analysis by simulating decreases in sample sizes to measure the subsequent change in model performance. From our sensitivity analysis, we found that text classifiers required a minimum sample size of 33% (c. 5.5k listings) to accurately identify relevant listings (for our dataset), providing a reference point for future applications of this sort. Our results suggest that text classification is a viable tool that can be applied to the online trade of wildlife to reduce time dedicated to data cleaning. However, the success of text classifiers will vary depending on the advertisements and websites, and will therefore be context dependent. Further work to integrate other machine learning tools, such as image classification, may provide better predictive abilities in the context of streamlining data processing for wildlife trade related online data.

Managing propagule pressure to prevent invasive species establishments: propagule size, number, and risk-release curve.

There is considerable evidence that keeping propagule pressure low can drastically reduce establishment probability of potential invasive species. Yet, most management plans and research efforts fail to explicitly acknowledge all three of the components of propagule pressure: size, number, and the risk-release relationship. It is unclear how failing to specify one or more of these components can influence the efficacy of management plans in preventing invasive species establishment. Furthermore, even if all components are acknowledged and quantified, there currently is no mathematical tool available to calculate the levels of propagule pressure that ensure attainment of a predetermined, and system-specific, target establishment probability. Here, we quantify the resulting uncertainty in establishment probability when one or more components of propagule pressure is unknown by using parameter uncertainty analysis on realistic values of propagule pressure. In addition, to aid in the development of management plans that explicitly set propagule pressure limits, we develop a propagule-pressure sensitivity analysis that we use to determine the required reduction in levels for propagule size and number (representative of management actions) to maintain a target establishment probability. We show that the precision of establishment estimates is highly dependent on knowledge of all three propagule pressure components, where the possible range of values for establishment probability can vary by over 50% without full specification. In addition, our sensitivity analysis showed that propagule size and number can be altered independently or in conjunction to lower establishment probability below a target level. Importantly, our sensitivity analysis was able to specifically quantify how much reduction in a propagule pressure component(s) is needed to reach a given target establishment probability. Our findings suggest that quantifying the three components of propagule pressure should be a priority for invasive species prevention moving forward. Furthermore, our sensitivity analysis tool can serve to guide the development of new invasive species management plans in a transparent and quantitative manner. Together with information on the costs associated with approaches to reducing propagule pressure, our tool can be used to identify the most cost-effective approach to prevent invasive species establishments.

A guide to using the internet to monitor and quantify the wildlife trade.

The unrivaled growth in e-commerce of animals and plants presents an unprecedented opportunity to monitor wildlife trade to inform conservation, biosecurity, and law enforcement. Using the internet to quantify the scale of the wildlife trade (volume and frequency) is a relatively recent and rapidly developing approach that lacks an accessible framework for locating relevant websites and collecting data. We produced an accessible guide for internet-based wildlife trade surveillance. We detailed a repeatable method involving a systematic internet search, with search engines, to locate relevant websites and content. For data collection, we highlight web-scraping technology as an efficient way to collect data in an automated fashion at regularly timed intervals. Our guide is applicable to the multitude of trade-based contexts because researchers can tailor search keywords for specific taxa or derived products and locations of interest. We provide information for working with the diversity of websites used in wildlife trade. For example, to locate relevant content on social media (e.g., posts or groups), each social media platform should be examined individually via the site's internal search engine. A key advantage of using the internet to study wildlife trade is the relative ease of access to an increasing amount of trade-related data. However, not all wildlife trade occurs online and it may occur on unobservable sections of the internet.

Resumen Una Guía para Usar el Internet para Monitorear y Cuantificar el Mercado de Fauna El crecimiento incomparable del comercio en línea de animales y plantas representa una oportunidad sin precedentes para monitorear el mercado de fauna y así orientar a la conservación, la bioseguridad y la aplicación de la ley. El uso del internet para cuantificar la escala del mercado de fauna (volumen y frecuencia) es una estrategia relativamente reciente y de rápido desarrollo que carece de un marco de trabajo accesible para la localización de sitios web relevantes y para la recolección de datos. Realizamos una guía accesible para la vigilancia del mercado de fauna en internet. Detallamos un método repetible que involucra una búsqueda sistemática por internet, por medio de buscadores, para localizar sitios web y contenidos relevantes. Para la recolección de datos, resaltamos la tecnología de web scraping como una manera eficiente de obtener datos de manera automatizada a intervalos regulares de tiempo. Nuestra guía puede aplicarse a la multitud de contextos basados en el mercado porque los investigadores pueden adaptar las palabras de búsqueda a taxones específicos o productos derivados y a localidades de interés. Proporcionamos información para poder trabajar con la diversidad de sitios web que se usan para el mercado de fauna. Por ejemplo, para localizar contenido relevante en las redes sociales (p. ej.: publicaciones o grupos), cada plataforma social debería ser examinada individualmente por medio del buscador interno del sitio. Una ventaja importante de usar el internet para estudiar el mercado de fauna es el acceso relativamente sencillo a una creciente cantidad de datos relacionados con el mercado. Sin embargo, no todo el mercado de fauna ocurre en línea y puede que suceda en secciones inobservables del internet.