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1.
J Biol Inorg Chem ; 28(1): 17-27, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36459222

RESUMEN

The inhibitory effects on mushrooms tyrosinase activity of some semi- and thiosemicarbazones were investigated. While the semicarbazones are inactive, the thiosemicarbazones are, in general, more active than the reference (kojic acid, IC50 = 70 µM), with maximum activity obtained with benzaldehyde thiosemicarbazone (IC50 = 7 µM). These inhibitors probably act by coordination of the copper(II) metal ions in the active site of tyrosinase: effectively, potentiometric studies conducted in water solutions confirm that the most active thiosemicarbazone is a good ligand for copper(II) ions. The tyrosinase CD spectra do not show any significant difference by addition of an inhibitor or an inactive compound. On the contrary, interesting results were obtained by spectrofluorimetric titrations of mushrooms tyrosinase aqueous solutions with some of the investigated compounds, giving helpful information about possible mechanism of action. The thiosemicarbazones here reported are not cytotoxic on human fibroblasts and do not activate cells in a pro-inflammatory way.


Asunto(s)
Agaricales , Tiosemicarbazonas , Humanos , Tiosemicarbazonas/farmacología , Tiosemicarbazonas/química , Monofenol Monooxigenasa/química , Cobre/química , Espectrometría de Fluorescencia , Inhibidores Enzimáticos/farmacología , Inhibidores Enzimáticos/química
2.
Curr Med Chem ; 21(33): 3785-818, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24934357

RESUMEN

Copper is present in different concentrations and chemical forms throughout the earth crust, surface and deep water and even, in trace amounts, in the atmosphere itself. Copper is one of the first metals used by humans, the first artifacts dating back 10,000 years ago. Currently, the world production of refined copper exceeds 16,000 tons/year. Copper is a micro-element essential to life, principally for its red-ox properties that make it a necessary cofactor for many enzymes, like cytochrome-c oxidase and superoxide dismutase. In some animal species (e.g. octopus, snails, spiders, oysters) copper-hemocyanins also act as carriers of oxygen instead of hemoglobin. However, these red-ox properties also make the pair Cu(+)/Cu(2+) a formidable catalyst for the formation of reactive oxygen species, when copper is present in excess in the body or in tissues. The treatment of choice in cases of copper overloading or intoxication is the chelation therapy. Different molecules are already in clinical use as chelators or under study or clinical trial. It is worth noting that chelation therapy has also been suggested to treat some neurodegenerative diseases or cardiovascular disorders. In this review, after a brief description of the homeostasis and some cases of dyshomeostasis of copper, the main (used or potential) chelators are described; their properties in solution, even in relation to the presence of metal or ligand competitors, under physiological conditions, are discussed. The legislation of the most important Western countries, regarding both the use of chelating agents and the limits of copper in foods, drugs and cosmetics, is also outlined.


Asunto(s)
Quelantes/química , Cobre/química , Quelantes/uso terapéutico , Cosméticos , Humanos , Oxidación-Reducción
3.
Eur J Biochem ; 268(17): 4731-9, 2001 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-11532009

RESUMEN

A group of ubiquitous small proteins (average 13 kDa) has been isolated from several sensory organs of a wide range of insect species. They are believed to be involved in chemical communication and perception (olfaction or taste) and have therefore been called chemo-sensory proteins (CSPs). Several CSPs have been identified in the antennae and proboscis of the moth Mamestra brassicae. We have expressed one of the antennal proteins (CSPMbraA6) in large quantities as a soluble recombinant protein in Escherichia coli periplasm. This 112-residue protein is a highly soluble monomer of 13 072 Da with a pI of 5.5. NMR data (1H and 15N) indicate that CSPMbraA6 is well folded and contains seven alpha helices (59 amino acids) and two short extended structures (12 amino acids) from positions 5 to 10 and from 107 to 112. Thirty-seven amino acids are involved in beta turns and coiled segments and four amino acids are not assigned in the NMR spectra (the N-terminus and the residue 52 in the loop 48-53), probably due to their mobility. This is the first report on the expression and structural characterization of a recombinant CSP.


Asunto(s)
Proteínas de Insectos/química , Mariposas Nocturnas/química , Secuencia de Aminoácidos , Animales , Proteínas de Insectos/genética , Espectroscopía de Resonancia Magnética , Datos de Secuencia Molecular , Isótopos de Nitrógeno , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Homología de Secuencia de Aminoácido
4.
J Mol Biol ; 312(3): 541-54, 2001 Sep 21.
Artículo en Inglés | MEDLINE | ID: mdl-11563915

RESUMEN

The nitrite reductase (NIR) from Pseudomonas aeruginosa (NIR-Pa) is a soluble enzyme catalysing the reduction of nitrite (NO2(-)) to nitric oxide (NO). The enzyme is a 120 kDa homodimer, in which the monomers carry a c-heme domain and a d(1)-heme domain. The structures of the enzyme in both the oxidised and reduced state were solved previously and indicate His327 and His369 as putative catalytic residues. The kinetic characterisation of site-directed mutants has shown that the substitution of either one of these two His with Ala dramatically reduces the physiologically relevant reactivity towards nitrite, leaving the reactivity towards oxygen unaffected. The three-dimensional structures of P. aeruginosa NIR mutant H327A, and H369A in complex with NO have been solved by multiple wavelength anomalous dispersion (MAD), using the iron anomalous signal, and molecular replacement techniques. In both refined crystal structures the c-heme domain, whilst preserving its classical c-type cytochrome fold, has undergone a 60 degrees rigid-body rotation around an axis parallel with the pseudo 8-fold axis of the beta-propeller, and passing through residue Gln115. Even though the distance between the Fe ions of the c and d(1)-heme remains 21 A, the edge-to-edge distance between the two hemes has increased by 5 A. Furthermore the distal side of the d(1)-heme pocket appears to have undergone structural re-arrangement and Tyr10 has moved out of the active site. In the H369A-NO complex, the position and orientation of NO is significantly different from that of the NO bound to the reduced wild-type structure. Our results provide insight into the flexibility of the enzyme and the distinction between nitrite and oxidase reduction mechanisms. Moreover they demonstrate that the two histidine residues play a crucial role in the physiological activity of nitrite reduction, ligand binding and in the structural organisation of nitrite reductase from P. aeruginosa.


Asunto(s)
Alanina/metabolismo , Sustitución de Aminoácidos/genética , Histidina/metabolismo , Óxido Nítrico/metabolismo , Nitrito Reductasas/química , Nitrito Reductasas/metabolismo , Pseudomonas aeruginosa/enzimología , Alanina/genética , Sitios de Unión , Cristalización , Cristalografía por Rayos X , Dimerización , Hemo/química , Hemo/metabolismo , Histidina/genética , Modelos Moleculares , Mutación/genética , Óxido Nítrico/química , Nitrito Reductasas/genética , Docilidad , Estructura Cuaternaria de Proteína , Estructura Terciaria de Proteína , Pseudomonas aeruginosa/genética , Espectrofotometría , Electricidad Estática
5.
J Mol Biol ; 311(1): 123-9, 2001 Aug 03.
Artículo en Inglés | MEDLINE | ID: mdl-11469862

RESUMEN

Camelids, camels and llamas, have a unique immune system able to produce heavy-chain only antibodies. Their VH domains (VHHs) are the smallest binding units produced by immune systems, and therefore suitable for biotechnological applications through heterologous expression. The recognition of protein antigens by these VHHs is rather well documented, while less is known about the VHH/hapten interactions. The recently reported X-ray structure of a VHH in complex with a copper-containing azo-dye settled the ability of VHH to recognize haptens by forming a cavity between the three complementarity-determining regions (CDR). Here we report the structures of a VHH (VHH A52) free or complexed with an azo-dye, RR1, without metal ion. The structure of the complex illustrates the involvement of CDR2, CDR3 and a framework residue in a lateral interaction with the hapten. Such a lateral combining site is comparable to that found in classical antibodies, although in the absence of the VL.


Asunto(s)
Especificidad de Anticuerpos , Camélidos del Nuevo Mundo/inmunología , Colorantes , Haptenos/inmunología , Cadenas Pesadas de Inmunoglobulina/inmunología , Región Variable de Inmunoglobulina/química , Región Variable de Inmunoglobulina/inmunología , Secuencia de Aminoácidos , Animales , Sitios de Unión de Anticuerpos/inmunología , Colorantes/química , Regiones Determinantes de Complementariedad/química , Regiones Determinantes de Complementariedad/inmunología , Cristalografía por Rayos X , Haptenos/química , Cadenas Pesadas de Inmunoglobulina/química , Ligandos , Masculino , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Alineación de Secuencia , Triazinas/química , Triazinas/inmunología
6.
J Biol Chem ; 276(23): 20078-84, 2001 Jun 08.
Artículo en Inglés | MEDLINE | ID: mdl-11274212

RESUMEN

Pheromone-binding proteins (PBPs), located in the sensillum lymph of pheromone-responsive antennal hairs, are thought to transport the hydrophobic pheromones to the chemosensory membranes of olfactory neurons. It is currently unclear what role PBPs may play in the recognition and discrimination of species-specific pheromones. We have investigated the binding properties and specificity of PBPs from Mamestra brassicae (MbraPBP1), Antheraea polyphemus (ApolPBP1), Bombyx mori (BmorPBP), and a hexa-mutant of MbraPBP1 (Mbra1-M6), mutated at residues of the internal cavity to mimic that of BmorPBP, using the fluorescence probe 1-aminoanthracene (AMA). AMA binds to MbraPBP1 and ApolPBP1, however, no binding was observed with either BmorPBP or Mbra1-M6. The latter result indicates that relatively limited modifications to the PBP cavity actually interfere with AMA binding, suggesting that AMA binds in the internal cavity. Several pheromones are able to displace AMA from the MbraPBP1- and ApolPBP1-binding sites, without, however, any evidence of specificity for their physiologically relevant pheromones. Moreover, some fatty acids are also able to compete with AMA binding. These findings bring into doubt the currently held belief that all PBPs are specifically tuned to distinct pheromonal compounds.


Asunto(s)
Proteínas Portadoras/metabolismo , Proteínas de Insectos/metabolismo , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Proteínas Portadoras/química , Dicroismo Circular , Cartilla de ADN , Proteínas de Insectos/química , Péptidos y Proteínas de Señalización Intercelular , Lepidópteros , Espectrometría de Masas , Datos de Secuencia Molecular , Unión Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido , Espectrometría de Fluorescencia
7.
Proc Natl Acad Sci U S A ; 98(5): 2232-7, 2001 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-11226222

RESUMEN

Cd(1) nitrite reductase catalyzes the conversion of nitrite to NO in denitrifying bacteria. Reduction of the substrate occurs at the d(1)-heme site, which faces on the distal side some residues thought to be essential for substrate binding and catalysis. We report the results obtained by mutating to Ala the two invariant active site histidines, His-327 and His-369, of the enzyme from Pseudomonas aeruginosa. Both mutants have lost nitrite reductase activity but maintain the ability to reduce O(2) to water. Nitrite reductase activity is impaired because of the accumulation of a catalytically inactive form, possibly because the productive displacement of NO from the ferric d(1)-heme iron is impaired. Moreover, the two distal His play different roles in catalysis; His-369 is absolutely essential for the stability of the Michaelis complex. The structures of both mutants show (i) the new side chain in the active site, (ii) a loss of density of Tyr-10, which slipped away with the N-terminal arm, and (iii) a large topological change in the whole c-heme domain, which is displaced 20 A from the position occupied in the wild-type enzyme. We conclude that the two invariant His play a crucial role in the activity and the structural organization of cd(1) nitrite reductase from P. aeruginosa.


Asunto(s)
Histidina/metabolismo , Nitrato Reductasas/metabolismo , Pseudomonas aeruginosa/enzimología , Sitios de Unión , Catálisis , Cristalografía por Rayos X , Cinética , Mutagénesis Sitio-Dirigida , Nitrato-Reductasa , Nitrato Reductasas/química , Nitrato Reductasas/genética , Conformación Proteica
8.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 1): 137-9, 2001 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-11134936

RESUMEN

Chemosensory proteins (CSPs) are small proteins (13 kDa on average) present in several sensory organs from a wide range of insect species. They are believed to be involved in chemoperception (olfaction or taste) and to play a role in chemical transport from air or water to chemosensitive receptors. Here, the first crystals of a CSP originating from the moth Mamestra brassicae (Mbra) proboscis and expressed as recombinant protein in Escherichia coli periplasm are reported. Crystals of MbraCSP2 were obtained by the hanging-drop vapour-diffusion method under the following conditions: 1 microl of a 46 mg ml(-1) protein solution in 50 mM Tris pH 8.0 containing cetyl alcohol as ligand (1:5 molar ratio) was mixed with 1 microl of well solution containing 30% PEG 4000, 0.2 M sodium acetate in 100 mM Tris at pH 8.4. The protein-cetyl alcohol complex crystallizes in space group P2(1), with unit-cell parameters a = 47.9, b = 49.7, c = 50.3 A, beta = 110.1 degrees. With two molecules in the asymmetric unit, the V(M) is 2.15 A(3) Da(-1) and the solvent content is 42%. A complete data set has been collected at 1.6 A resolution on beamline ID14-2 (ESRF, Grenoble). Se-Met expression has been performed with a view to solving the CSP2 structure with MAD data collection using the Se absorption edge.


Asunto(s)
Proteínas de Insectos/química , Mariposas Nocturnas/química , Animales , Cristalización , Cristalografía por Rayos X , Conformación Proteica , Proteínas Recombinantes/química
9.
J Mol Biol ; 305(3): 459-69, 2001 Jan 19.
Artículo en Inglés | MEDLINE | ID: mdl-11152604

RESUMEN

We have solved the crystal structure of aphrodisin, a pheromonal protein inducing a copulatory behaviour in male hamster, using MAD methods with selenium, at 1.63 A resolution. The monomeric protein belongs to the lipocalin family, and possesses a disulfide bridge in a loop between strands 2 and 3. This disulfide bridge is characteristic of a family of lipocalins mainly identified in rodents, and is analogous to the fifth disulfide bridge of the long neurotoxins, such as alpha cobratoxin. An elongated electron density was found inside the buried cavity, which might represent a serendipitous ligand of unknown origin. The analysis of the water accessible surfaces of the side-chains bordering the cavity indicates that Phe76 may be the door for the natural ligand to access the cavity. This residue defines the entry of the cavity as belonging to the consensus for lipocalins. The face bearing Phe76 might also serve for the interaction with the receptor.


Asunto(s)
Feromonas/química , Proteínas/química , Secuencia de Aminoácidos , Animales , Sitios de Unión , Proteínas Portadoras/química , Proteínas Neurotóxicas de Elápidos/química , Secuencia de Consenso , Cricetinae , Cristalografía por Rayos X , Disulfuros/química , Disulfuros/metabolismo , Femenino , Glicosilación , Ligandos , Lipocalina 1 , Modelos Moleculares , Datos de Secuencia Molecular , Fenilalanina/metabolismo , Feromonas/metabolismo , Estructura Secundaria de Proteína , Proteínas/metabolismo , Selenio/metabolismo , Alineación de Secuencia , Agua/metabolismo
10.
J Biol Chem ; 276(10): 7150-5, 2001 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-11114310

RESUMEN

Bovine odorant-binding protein (bOBP) is a dimeric lipocalin present in large amounts in the respiratory and olfactory nasal mucosa. The structure of bOBP refined at 2.0-A resolution revealed an elongated volume of electron density inside each buried cavity, indicating the presence of one (or several) naturally occurring copurified ligand(s) (Tegoni et al. (1996) Nat. Struct. Biol. 3, 863-867; Bianchet et al. (1996) Nat. Struct. Biol. 3, 934-939). In the present work, by combining mass spectrometry, x-ray crystallography (1.8-A resolution), and fluorescence, it has been unambiguously established that natural bOBP contains the racemic form of 1-octen-3-ol. This volatile substance is a typical component of bovine breath and in general of odorous body emanations of humans and animals. The compound 1-octen-3-ol is also an extremely potent olfactory attractant for many insect species, including some parasite vectors like Anopheles (Plasmodium) or Glossina (Trypanosoma). For the first time, a function can be assigned to an OBP, with a possible role of bOBP in the ecological relationships between bovine and insect species.


Asunto(s)
Ligandos , Octanoles/química , Octanoles/metabolismo , Receptores Odorantes/química , Receptores Odorantes/metabolismo , Animales , Sitios de Unión , Bovinos , Cristalografía por Rayos X , Relación Dosis-Respuesta a Droga , Colorantes Fluorescentes/farmacología , Cromatografía de Gases y Espectrometría de Masas , Insectos , Cinética , Espectrometría de Masas , Modelos Moleculares , Receptores Odorantes/fisiología , Espectrometría de Fluorescencia
11.
Biochim Biophys Acta ; 1482(1-2): 229-40, 2000 Oct 18.
Artículo en Inglés | MEDLINE | ID: mdl-11058764

RESUMEN

Odorant binding proteins (OBPs) pertain to one of the most abundant classes of proteins found in the olfactory apparatus. OBPs are a sub-class of lipocalins, defined by their property of reversibly binding volatile chemicals, that we call 'odorants'. Numerous sequences of OBPs are now available, derived from protein sequencing from nasal mucus material, or from DNA sequences. The structural knowledge of OBPs has been improved too in recent years, with the availability of two X-ray structures. The physiological role of OBPs remains, however, essentially hypothetical, and most probably, not linked to a function of odor transport. The present knowledge on OBP biochemistry, sequence and structure will be examined here in relation to the different functional hypotheses proposed for OBPs.


Asunto(s)
Receptores Odorantes/genética , Animales , Secuencia Conservada , Disulfuros/metabolismo , Humanos , Ligandos , Modelos Moleculares , Odorantes , Conformación Proteica , Receptores Odorantes/química , Receptores Odorantes/clasificación
12.
J Biol Chem ; 275(52): 41133-6, 2000 Dec 29.
Artículo en Inglés | MEDLINE | ID: mdl-11024061

RESUMEN

Nitrous-oxide reductases (N2OR) catalyze the two-electron reduction of N(2)O to N(2). The crystal structure of N2ORs from Pseudomonas nautica (Pn) and Paracoccus denitrificans (Pd) were solved at resolutions of 2.4 and 1.6 A, respectively. The Pn N2OR structure revealed that the catalytic CuZ center belongs to a new type of metal cluster in which four copper ions are liganded by seven histidine residues. A bridging oxygen moiety and two other hydroxide ligands were proposed to complete the ligation scheme (Brown, K., Tegoni, M., Prudencio, M., Pereira, A. S., Besson, S., Moura, J. J. G., Moura, I., and Cambillau, C. (2000) Nat. Struct. Biol. 7, 191-195). However, in the CuZ cluster, inorganic sulfur chemical determination and the high resolution structure of Pd N2OR identified a bridging inorganic sulfur instead of an oxygen. This result reconciles the novel CuZ cluster with the hitherto puzzling spectroscopic data.


Asunto(s)
Cobre/química , Oxidorreductasas/química , Azufre/química , Catálisis , Espectroscopía de Resonancia por Spin del Electrón , Oxidorreductasas/metabolismo , Paracoccus/enzimología , Pseudomonas/enzimología
13.
J Mol Biol ; 300(1): 127-39, 2000 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-10864504

RESUMEN

Porcine odorant binding protein (pOBP) is a monomer of 157 amino acid residues, purified in abundance from pig nasal mucosa. In contrast to the observation on lipocalins as retinol binding protein (RBP), major urinary protein (MUP) or bovine odorant binding protein (bOBP), no naturally occurring ligand was found in the beta-barrel cavity of pOBP. Porcine OBP was therefore chosen as a simple model for structure/function studies with odorant molecules. In competition experiments with tritiated pyrazine, the affinity of pOBP towards several odorant molecules belonging to different chemical classes has been found to be of the micromolar order, with a 1:1 stoichiometry. The X-ray structures of pOBP complexed to these molecules were determined at resolution between 2.15 and 1.4 A. As expected, the electron density of the odorant molecules was observed into the hydrophobic beta-barrel of the lipocalin. Inside this cavity, very few specific interactions were established between the odorant molecule and the amino acid side-chains, which did not undergo significant conformational change. The high B-factors observed for the odorant molecules as well as the existence of alternative conformations reveal a non-specific mode of binding of the odorant molecules in the cavity.


Asunto(s)
Receptores Odorantes/química , Receptores Odorantes/metabolismo , Porcinos , Animales , Unión Competitiva , Cristalografía por Rayos X , Concentración 50 Inhibidora , Ligandos , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Pirazinas/química , Pirazinas/metabolismo , Soluciones , Especificidad por Sustrato
14.
Biochemistry ; 39(14): 3899-907, 2000 Apr 11.
Artículo en Inglés | MEDLINE | ID: mdl-10747777

RESUMEN

The aerobic purification of Pseudomonas nautica 617 nitrous oxide reductase yielded two forms of the enzyme exhibiting different chromatographic behaviors. The protein contains six copper atoms per monomer, arranged in two centers named Cu(A) and Cu(Z). Cu(Z) could be neither oxidized nor further reduced under our experimental conditions, and exhibits a 4-line EPR spectrum (g(x)=2.015, A(x)=1.5 mT, g(y)=2.071, A(y)=2 mT, g(z)=2.138, A(z)=7 mT) and a strong absorption at approximately 640 nm. Cu(A) can be stabilized in a reduced EPR-silent state and in an oxidized state with a typical 7-line EPR spectrum (g(x)=g(y)= 2.021, A(x) = A(y)=0 mT, g(z) = 2.178, A(z)= 4 mT) and absorption bands at 480, 540, and approximately 800 nm. The difference between the two purified forms of nitrous oxide reductase is interpreted as a difference in the oxidation state of the Cu(A) center. In form A, Cu(A) is predominantly oxidized (S = (1)/(2), Cu(1.5+)-Cu(1.5+)), while in form B it is mostly in the one-electron reduced state (S = 0, Cu(1+)-Cu(1+)). In both forms, Cu(Z) remains reduced (S = 1/2). Complete crystallographic data at 2.4 A indicate that Cu(A) is a binuclear site (similar to the site found in cytochrome c oxidase) and Cu(Z) is a novel tetracopper cluster [Brown, K., et al. (2000) Nat. Struct. Biol. (in press)]. The complete amino acid sequence of the enzyme was determined and comparisons made with sequences of other nitrous oxide reductases, emphasizing the coordination of the centers. A 10.3 kDa peptide copurified with both forms of nitrous oxide reductase shows strong homology with proteins of the heat-shock GroES chaperonin family.


Asunto(s)
Oxidorreductasas/química , Pseudomonas/química , Pseudomonas/enzimología , Secuencia de Aminoácidos , Secuencia de Bases , Cobre , Cristalografía por Rayos X , Datos de Secuencia Molecular , Oxidorreductasas/aislamiento & purificación , Alineación de Secuencia
15.
Nat Struct Biol ; 7(3): 191-5, 2000 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-10700275

RESUMEN

Nitrous oxide (N20) is a greenhouse gas, the third most significant contributor to global warming. As a key process for N20 elimination from the biosphere, N20 reductases catalyze the two-electron reduction of N20 to N2. These 2 x 65 kDa copper enzymes are thought to contain a CuA electron entry site, similar to that of cytochrome c oxidase, and a CuZ catalytic center. The copper anomalous signal was used to solve the crystal structure of N20 reductase from Pseudomonas nautica by multiwavelength anomalous dispersion, to a resolution of 2.4 A. The structure reveals that the CuZ center belongs to a new type of metal cluster, in which four copper ions are liganded by seven histidine residues. N20 binds to this center via a single copper ion. The remaining copper ions might act as an electron reservoir, assuring a fast electron transfer and avoiding the formation of dead-end products.


Asunto(s)
Cobre/química , Cobre/metabolismo , Oxidorreductasas/química , Oxidorreductasas/metabolismo , Pseudomonas/enzimología , Secuencia de Aminoácidos , Azurina/análogos & derivados , Azurina/metabolismo , Sitios de Unión , Dominio Catalítico , Cristalografía por Rayos X , Dimerización , Histidina/metabolismo , Enlace de Hidrógeno , Modelos Moleculares , Datos de Secuencia Molecular , Óxido Nitroso/metabolismo , Oxidación-Reducción , Conformación Proteica , Pliegue de Proteína , Relación Estructura-Actividad
16.
Biochemistry ; 39(6): 1217-22, 2000 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-10684599

RESUMEN

Camelids can produce antibodies devoid of light chains and CH1 domains (Hamers-Casterman, C. et al. (1993) Nature 363, 446-448). Camelid heavy-chain variable domains (VHH) have high affinities for protein antigens and the structures of two of these complexes have been determined (Desmyter, A. et al. (1996) Nature Struc. Biol. 3, 803-811; Decanniere, K. et al. (1999) Structure 7, 361-370). However, the small size of these VHHs and their monomeric nature bring into question their capacity to bind haptens. Here, we have successfully raised llama antibodies against the hapten azo-dye Reactive Red (RR6) and determined the crystal structure of the complex between a dimer of this hapten and a VHH fragment. The surface of interaction between the VHH and the dimeric hapten is large, with an area of ca. 300 A(2); this correlates well with the low-dissociation constant of 22 nM measured for the monomer. The VHH fragment provides an efficient combining site to the RR6, using its three CDR loops. In particular, CDR1 provides a strong interaction to the hapten through two histidine residues bound to its copper atoms. VHH fragments might, therefore, prove to be valuable tools for selecting, removing, or capturing haptens. They are likely to play a role in biotechnology extending beyond protein recognition alone.


Asunto(s)
Haptenos/química , Cadenas Pesadas de Inmunoglobulina/química , Región Variable de Inmunoglobulina/química , Secuencia de Aminoácidos , Animales , Sitios de Unión , Camélidos del Nuevo Mundo , Colorantes , Cristalización , Cristalografía por Rayos X , Haptenos/inmunología , Haptenos/metabolismo , Cadenas Pesadas de Inmunoglobulina/metabolismo , Región Variable de Inmunoglobulina/metabolismo , Masculino , Datos de Secuencia Molecular , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Triazinas/química , Triazinas/inmunología , Triazinas/metabolismo
17.
Eur J Biochem ; 264(3): 707-16, 1999 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-10491116

RESUMEN

Pheromone binding proteins (PBPs) are small proteins (17 kDa on average) present at high concentrations ( approximately 10 mM) in the sensillum lymph of Lepidoptera antennae, where they play a key role in the perception of pheromones. By expression in Escherichia coli, we have obtained large quantities (2-3 mg.L-1) of pure, soluble, Mamestra brassicae PBP1 (MbraPBP1). These quantities are compatible with the requirements of X-ray and NMR studies. The recombinant protein has been characterized by native-polyacrylamide gel electrophoresis, Western blotting, N-terminal sequencing, mass spectrometry, gel filtration, circular dichroism, and NMR. Moreover, the recombinant MbraPBP1 has been shown to be able to bind the specific pheromone and a structural analogue, Z11-16:TFMK (cis-11-hexadecenyl trifluoromethyl ketone), in displacement experiments. Our results on MbraPBP1 confirm and extend previous findings on PBPs. MbraPBP1 and two PBPs from different species have been found to exist as dimers under nondenaturing conditions. The CD and structural prediction data confirm a markedly helical structure for insect PBPs rather than the beta-barrel fold found in vertebrates odorant binding proteins. We have tentatively identified the location of the helices and the short beta-strands with respect to the binding site. Currently we have obtained small diffracting crystals of the recombinant MbraPBP1 and determined their space group and molecular content.


Asunto(s)
Proteínas Portadoras/química , Proteínas Portadoras/metabolismo , Proteínas de Insectos/química , Proteínas de Insectos/metabolismo , Lepidópteros/metabolismo , Feromonas/metabolismo , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Proteínas Portadoras/genética , Dicroismo Circular , Cristalización , Cartilla de ADN/genética , Escherichia coli/genética , Expresión Génica , Genes de Insecto , Proteínas de Insectos/genética , Lepidópteros/genética , Espectroscopía de Resonancia Magnética , Datos de Secuencia Molecular , Reacción en Cadena de la Polimerasa , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido
18.
J Mol Biol ; 289(5): 1375-85, 1999 Jun 25.
Artículo en Inglés | MEDLINE | ID: mdl-10373373

RESUMEN

Human chorionic gonadotropin (hCG), is a placental hormone which exerts its major effect by stimulating progesterone production, crucially sustaining the early weeks of pregnancy. Detection of hCG with specific monoclonal antibodies (mAbs) has become the chosen means for pregnancy diagnosis. We have used antibody Fv fragments derived from two high-affinity mAbs, one against the alpha and the other against the beta-hCG subunit to enable the crystallisation of intact or desialylated hCG. Crystals of a ternary complex composed of Fv anti-alpha/hCG/Fv anti-beta were found to diffract to 3.5 A resolution, and the structure was solved by molecular replacement. In the crystal, the two Fvs keep hCG as in a molecular cage, providing good protein-protein contacts and leaving enough space for the saccharides to be accommodated in the cell solvent. The two Fvs were found not to interact directly through their complementary-determining regions with the hCG saccharides, but only with the protein. The hCG structure in the ternary complex was very close to that of the HF partially deglycosylated hormone, thus indicating that neither the saccharides nor the Fvs had any substantial influence on hormone structure.


Asunto(s)
Gonadotropina Coriónica/química , Fragmentos de Inmunoglobulinas/química , Secuencia de Aminoácidos , Anticuerpos Monoclonales/química , Anticuerpos Monoclonales/inmunología , Gonadotropina Coriónica/inmunología , Cristalografía por Rayos X , Humanos , Fragmentos de Inmunoglobulinas/inmunología , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica
19.
J Mol Biol ; 289(4): 1017-28, 1999 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-10369779

RESUMEN

The monohemic cytochrome c552from Pseudomonas nautica (c552-Pn) is thought to be the electron donor to cytochrome cd1, the so-called nitrite reductase (NiR). It shows as high levels of activity and affinity for the P. nautica NiR (NiR-Pn), as the Pseudomonas aeruginosa enzyme (NiR-Pa). Since cytochrome c552is by far the most abundant electron carrier in the periplasm, it is probably involved in numerous other reactions. Its sequence is related to that of the c type cytochromes, but resembles that of the dihemic c4cytochromes even more closely. The three-dimensional structure of P. nautica cytochrome c552has been solved to 2.2 A resolution using the multiple wavelength anomalous dispersion (MAD) technique, taking advantage of the presence of the eight Fe heme ions in the asymmetric unit. Density modification procedures involving 4-fold non-crystallographic averaging yielded a model with an R -factor value of 17.8 % (Rfree=20.8 %). Cytochrome c552forms a tight dimer in the crystal, and the dimer interface area amounts to 19% of the total cytochrome surface area. Four tighly packed dimers form the eight molecules of the asymmetric unit. The c552dimer is superimposable on each domain of the monomeric cytochrome c4from Pseudomomas stutzeri (c4-Ps), a dihemic cytochrome, and on the dihemic c domain of flavocytochrome c of Chromatium vinosum (Fcd-Cv). The interacting residues which form the dimer are both similar in character and position, which is also true for the propionates. The dimer observed in the crystal also exists in solution. It has been hypothesised that the dihemic c4-Ps may have evolved via monohemic cytochrome c gene duplication followed by evolutionary divergence and the adjunction of a connecting linker. In this process, our dimeric c552structure might be said to constitute a "living fossile" occurring in the course of evolution between the formation of the dimer and the gene duplication and fusion. The availability of the structure of the cytochrome c552-Pn and that of NiR from P. aeruginosa made it possible to identify putative surface patches at which the docking of c552to NiR-Pn may occur.


Asunto(s)
Grupo Citocromo c/química , Pseudomonas/química , Secuencia de Aminoácidos , Grupo Citocromo c/metabolismo , Dimerización , Microespectrofotometría , Modelos Moleculares , Imitación Molecular , Datos de Secuencia Molecular , Nitrito Reductasas/metabolismo , Conformación Proteica , Homología de Secuencia de Aminoácido , Soluciones
20.
J Biol Chem ; 274(21): 14997-5004, 1999 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-10329702

RESUMEN

The structures of nitrite reductase from Paracoccus denitrificans GB17 (NiR-Pd) and Pseudomonas aeruginosa (NiR-Pa) have been described for the oxidized and reduced state (Fülöp, V., Moir, J. W. B., Ferguson, S. J., and Hajdu, J. (1995) Cell 81, 369-377; Nurizzo, D., Silvestrini, M. C., Mathieu, M., Cutruzzolà, F., Bourgeois, D., Fülöp, V., Hajdu, J., Brunori, M., Tegoni, M., and Cambillau, C. (1997) Structure 5, 1157-1171; Nurizzo, D., Cutruzzolà, F., Arese, M., Bourgeois, D., Brunori, M., Cambillau, C. , and Tegoni, M. (1998) Biochemistry 37, 13987-13996). Major conformational rearrangements are observed in the extreme states although they are more substantial in NiR-Pd. The four structures differ significantly in the c heme domains. Upon reduction, a His17/Met106 heme-ligand switch is observed in NiR-Pd together with concerted movements of the Tyr in the distal site of the d1 heme (Tyr10 in NiR-Pa, Tyr25 in NiR-Pd) and of a loop of the c heme domain (56-62 in NiR-Pa, 99-116 in NiR-Pd). Whether the reduction of the c heme, which undergoes the major rearrangements, is the trigger of these movements is the question addressed by our study. This conformational reorganization is not observed in the partially reduced species, in which the c heme is partially or largely (15-90%) reduced but the d1 heme is still oxidized. These results suggest that the d1 heme reduction is likely to be responsible of the movements. We speculate about the mechanistic explanation as to why the opening of the d1 heme distal pocket only occurs upon electron transfer to the d1 heme itself, to allow binding of the physiological substrate NO2- exclusively to the reduced metal center.


Asunto(s)
Nitrito Reductasas/química , Nitrito Reductasas/metabolismo , Ácido Ascórbico/farmacología , Cristalización , Hemo/química , Hemo/metabolismo , Oxidación-Reducción , Estructura Terciaria de Proteína
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