Risk factors for avian influenza and Newcastle disease in smallholder farming systems, Madagascar highlands.

Newcastle disease (ND) and avian influenza (AI) are issues of interest to avian producers in Madagascar. Newcastle disease virus (NDV) is the major constraint for village aviculture, and avian influenza viruses type A (AIAV) are known to circulate in bird flocks. This study aims at classifying smallholder poultry farms, according to the combination of risk factors potentially associated with NDV and AIAV transmission and to assess the level of infection for each farm class. Two study sites, Lake Alaotra and Grand Antananarivo, were chosen with respect to their differences in terms of agro-ecological features and poultry productions. A typology survey involving 526 farms was performed to identify possible risk factors for (i) within-village, and (ii) between-village virus transmission. A cross-sectional serological study was also carried out in 270 farms to assess sero-prevalences of NDV and AIAV for each farm class and the link between them and risk factor patterns. For within-village transmission, four classes of farms were identified in Grand Antananarivo and five in Lake Alaotra. For between-village virus transmission, four classes of farms were identified for each site. In both sites, NDV sero-prevalence was higher than for AIAV. There was no evidence of the presence of H5 or H7 subtypes of AIAV. Sero-prevalences were significantly higher in Lake Alaotra than in Grand Antananarivo for both viruses (OR=2.4, p=0.02 for NDV, and OR=9.6, p<0.0001 for AIAV). For within-village NDV transmission in Grand Antananarivo, backyard chicken farms (OR=3.6, p<0.001), and chicken farms with biosecurity awareness (OR=3.4, p<0.01) had greater odds of having antibodies against NDV than the others. For between-village virus transmission, farms with multiple external contacts, and farms using many small markets had greater odds of having antibodies against NDV than the others (OR=5.4, p<0.01). For AIAV, there were no differences in sero-prevalences among farm classes. In Lake Alaotra, the observed high density of palmipeds and widespread rice paddies were associated with high sero-prevalences for both viruses, and a homogeneous risk of virus transmission between the different farm classes. In Grand Antananarivo, farm visits by collectors or animal health workers, and farm contacts with several markets were identified as potential risk factors for NDV transmission. Further studies are needed to identify the circulating virus genotypes, model their transmission risk, and provide adapted control measures.

Expression of seasonality in Merinos d'Arles ewes of different genotypes at the MT1 melatonin receptor gene.

Spontaneous ovulatory activity (SOA) in spring has been used to study the out-of-season breeding ability of Merinos d'Arles (MA) ewes. Within this breed, an association was found between more intense seasonality and genotype -/- at a MnlI restriction site (allele - for its absence v. + for its presence) in Exon II of the MT1 receptor gene. This study was designed to ascertain whether this association results in a direct effect of the MT1 genotype on the expression of seasonality in MA ewes. In the first year of the study, genotyping of 314 MA ewes at locus MnlI was carried out and resulted in frequencies of 43.0%, 44.9% and 12.1% for genotypes +/+, +/- and -/-, respectively. The SOA of these ewes was determined in early April of two consecutive years by assaying plasma progesterone concentrations in two blood samples taken 9 days apart. Groups of 30 ewes of each homozygous genotype (+/+ and -/-) were identified from this population and their SOA was followed by taking blood samples at regular intervals between January and mid-April of the second and third year of the study. In the second year, groups of ewes were managed together on rangelands, whereas in the third year each group was split into two subgroups given differential feed levels. The results clearly showed that genotype had no significant effect on SOA during the 2- to 3-month period preceding the introduction of rams for spring mating. In the second year of the study, in which the experimental procedure allowed a fair comparison of the fertility of ewes in spring mating, fertility was similar for both genotypes. The reciprocity of the association was not demonstrated and the MnlI polymorphic site could not be used as a genetic marker of selection for out-of-season breeding ability, at least not in the MA breed. The percentage of cycling ewes significantly decreased between January and April, and older ewes (5 or 6 years old depending on the year of the study) were more cyclic than younger ones (2 and 3 years old, respectively). The differential feeding level of ewes from early February did not significantly affect their SOA during the time period studied in the third year of the study.

"Global" and "local" predictions of dairy diet nutritional quality using near infrared reflectance spectroscopy.

The objective of the study was to evaluate performance of classic (global) and innovative (local) calibration techniques to monitor cattle diet, based on fecal near infrared reflectance spectroscopy (NIRS). A 3-yr on-farm survey (2005-2008) was carried out in Vietnam and La Reunion Island to collect animal, feed intake, and feces excretion data. Feed and feces were scanned by a Foss NIRsystem 5000 monochromator (Foss, Hillerød, Denmark) to estimate diet characteristics and nutrient digestibility. A data set including 1,322 diet-fecal pairs was built and used to perform global and local calibrations. Global equations gave satisfactory accuracy [coefficient of determination (R(2)) >0.8, 10% ≤ relative standard error of prediction (RSEP) ≤20%], whereas local equations gave good accuracy (R(2) >0.8, RSEP <10%) or excellent accuracy (R(2) >0.9, RSEP <10%) for the prediction of diet intake, quality, and digestibility. When validating the equations using the external individual data, both techniques were robust, with similar RSEP (8%) and R(2) (0.82) values. The predictive performance of global and local equations was improved (RSEP = 5% and R(2)=0.90) when averaged animal data from farm, visit, and similar milk production were used. In particular, local equations reduced RSEP by 43% and increased R(2) by 15%, on average, compared with those obtained from individual data. The low RSEP (4%), high R(2) (0.96), and good ratio performance deviation (RPD=5) illustrated the excellent accuracy and robustness of the local equations. Findings suggest the ability of fecal NIRS to successfully and more accurately predict diet properties (intake, quality, and digestibility) with local calibration techniques compared with classic global techniques, especially on an averaged data set. Local calibration techniques represent an alternative promising method and potentially a decision support tool to decide whether diets meet dairy cattle requirements or need to be modified.

Efficiency in milk production on Reunion Island: dealing with land scarcity.

This paper aims to analyze efficiency on dairy farms in Reunion Island, a French overseas district located in the Indian Ocean. On this island, dairy farming is promoted with financial and technical support from the European Union, with the French and local governments aiming at reducing dependency on imports of milk powder and dairy products and creating employment. A critical factor for increasing the local milk production is the limited availability of arable land because of the small size and the volcanic nature of the island. In this paper, we study the efficiency levels of dairy production on 34 farms by using a data envelopment analysis approach. The average technical efficiency score of farms, assuming constant returns to scale, was 0.927, with 19 out of 34 farms not being efficient. The technical efficiency with a variable returns to scale specification was 0.951. The efficiency with which farmers used their land (subvector efficiencies) was estimated in a second model. The average subvector efficiencies calculated with constant returns to scale and variable returns to scale models were lower than the technical efficiencies. The farmers on the efficiency frontier had a relatively higher milk production, milk production per cow, and land surface than those who were less efficient. A policy promoting better use of the land on inefficient farms should increase the milk production-to-land ratio. Possible on-farm strategies are improved feeding systems, farms having their own heifer breeding, and improved genetics.

Potential impacts of climate change on stable flies, investigated along an altitudinal gradient.

Adult populations of stable flies were sampled along an altitudinal transect in Reunion Island to determine whether higher temperatures were associated with: (a) higher numbers of flies; (b) a longer season of infestation, and/or (c) different responses to warming in the cosmopolitan Stomoxys calcitrans (L) and the tropical Stomoxys niger niger Macquart (Diptera: Muscidae). Flies of both species were trapped at seven farms situated at four altitudes (100-1600 m a.s.l.) over a 90-week period. For both species, there were no relationships between the maximum or mean fly abundance and altitude. Only minimum abundance in winter was significantly higher at lower altitudes. Maximum and mean abundances differed significantly between nearby farms under similar climatic conditions. Seasonal fluctuations in fly abundance changed along the gradient. At lower altitudes, population growth started earlier after the winter but abundance declined earlier in summer, which resulted in a shift of the season of infestation. Seasonal fluctuations of both species were strongly related to climate variables at high altitude, mainly temperature. However, climate variables explained a decreasing proportion of the variations in abundance at lower altitudes. Stomoxys calcitrans was the most abundant species overall, but the proportion of S. n. niger increased significantly at lower altitudes and this species became predominant at 100 m a.s.l. It is concluded that stable fly infestations are unlikely to worsen in response to global warming. Maximum abundance is limited by local factors, possibly larval resources, which suggests that adequate husbandry practices could override the impact of climate change. Because S. n. niger tends to be the predominant pest at elevated temperatures, it is recommended that this species should not be introduced in areas where climate is changing.

Relationships between chemical properties of larval media and development of two Stomoxys species (Diptera: Muscidae) from Reunion Island.

The development of two cattle pests, Stomoxys calcitrans L. and Stomoxys niger niger Macquart (Diptera: Muscidae), was studied in the laboratory using seven potential larval media from a dairy farm on Reunion Island. The media were six types of cattle feed and an old manure medium. Egg-to-adult survival, duration of development, and adult live weight at emergence were determined for both fly species on each medium. The media were analyzed for pH, nitrogen, organic matter, and structural compounds (cellulose, hemicellulose, lignin). For S. calcitrans, immature survival was significantly higher on sugarcane leaves, Rhodes grass, and elephant grass; for S. niger, survival was significantly higher on the same substrates plus sugarcane tops. These substrates were characterized by slightly acid pH values (range, 5.4-6.0). In both species, there were significant bell-shape relationships between immature survival and substrate pH. The developmental time of both fly species was significantly shorter on Rhodes grass, Rhodes grass hay, and elephant grass. These substrates were characterized by high cellulose contents and low soluble organic fractions. In both species, there were significant linear relationships between developmental time and cellulose content of substrates. Similarly, there were significant linear relationships between adult live weight and cellulose content of substrates. The C:N ratio of the most favorable substrates was highly variable. Although the relationships revealed in this study do not establish causation, it is suggested that pH and cellulose content may have direct and indirect effects on Stomoxys development.

Postcalving factors affecting conception risk in Holstein dairy cows in tropical and sub-tropical conditions.

The objective was to identify postpartum risk factors between nutritional imbalance and health disorders affecting first-service conception risk (FSCR) in 21 commercial Holstein herds in Reunion Island. Multivariate logistic-regression models including herd as a random effect were used to analyze the relationship between FSCR and energy status, nitrogen status, hepatic function, mineral deficiencies, and postpartum health disorders. Two models (A and B) were built on two subsets of data (n=446 and n=863) with risk indicators measured during the first month of lactation and around time of first service, respectively, adjusted for season, breed, parity, origin, milk yield, calving to first service interval (CS1), and type of estrus (spontaneous vs. induced). The averaged conception risk was 0.266+/-0.015 (n=913) (mean+/-S.E.M.). In both models, FSCR was decreased by CS1 < or = 60 d and induced estrus. In model A, FSCR was decreased (p<0.05) for cows with mean cumulative 100 d daily milk yield < or =23 kg/d and >27 kg/d, with losses of body condition score >1.5, and with retained placenta. In model B, FSCR was decreased (p<0.05) for cows inseminated during wet season, previously raised out of the farm as nulliparous, with blood magnesium concentration < or =0.9 mmol/L, and for high-yielding cows (100 d milk yield > 27 kg/d) with glutamate deshydrogenase>17 UI/L. Hence, high-body-lipid mobilization during the first month of lactation was a strong nutritional predictor of low FSCR together with liver damage in high-yielding cows. Interestingly, our models revealed that infertility is better related to nutritional factors than to postpartum health disorders occurrence.

Efficiency of traps for Stomoxys calcitrans and Stomoxys niger niger on Reunion Island.

The main objective of this study was to compare the trapping efficiency of two Alsynite sticky traps (modified Williams and modified Broce) and two phtalogen blue cloth traps (Vavoua and Nzi) to be used in an integrated control programme of Stomoxys spp. (Diptera: Muscidae) on Reunion Island. Mean daily catches of these flies on two dairy farms differed significantly between the four types of trap. The Broce trap was the least efficient and had the lowest specificity for Stomoxys spp. The Vavoua, Nzi and Williams traps performed significantly better but could not be ranked on the basis of the numbers of Stomoxys caught because their respective performances differed between farms. Given the various practical criteria, it is concluded that, as control tools, blue cloth traps (Vavoua and Nzi) have practical advantages over the Williams trap. The Vavoua trap, which is less expensive and easier to use for farmers, seems adequate to complement other methods of fly control on Reunion Island.

The use of multilevel models to evaluate sources of variation in reproductive performance in dairy cattle in Reunion Island.

Sources of variation in measures of reproductive performance in dairy cattle were evaluated using data collected from 3207 lactations in 1570 cows in 50 herds from five geographic regions of Reunion Island (located off the east coast of Madagascar). Three continuously distributed reproductive parameters (intervals from calving-to-conception, calving-to-first-service and first-service-to-conception) were considered, along with one Binomial outcome (first-service-conception risk). Multilevel models which take into account the hierarchical nature of the data were used to fit all models. For the overall measure of calving-to-conception interval, 86% of the variation resided at the lactation level with only 7, 6 and 2% at the cow, herd and regional levels, respectively. The proportion of variance at the herd and cow levels were slightly higher for the calving-to-first-service interval (12 and 9%, respectively) - but for the other two parameters (first-service-conception risk and first-service-to-conception interval), >90% of the variation resided at the lactation level. For the three continuous dependent variables, comparison of results between models based on log-transformed data and Box-Cox-transformed data suggested that minor departures from the assumption of normality did not have a substantial effect on the variance estimates. For the Binomial dependent variable, five different estimation procedures (penalised quasi-likelihood, Markov-Chain Monte Carlo, parametric and non-parametric bootstrap estimates and maximum-likelihood) yielded substantially different results for the estimate of the cow-level variance.

Graphical approaches to support the analysis of linear-multilevel models of lamb pre-weaning growth in Kolda (Senegal).

Linear-multilevel models (LMM) are mixed-effects models in which several levels of grouping may be specified (village, herd, animal, ellipsis). This study highlighted the usefulness of graphical methods in their analysis through: (1) the choice of the fixed and random effects and their structure, (2) the assessment of goodness-of-fit and (3) distributional assumptions for random effects and residuals. An LMM was developed to study the effect of ewe deworming with morantel on lamb pre-weaning growth in a field experiment involving 182 lambs in 45 herds and 10 villages in Kolda, Senegal. Growth was described as a quadratic polynomial of age. Other covariates were sex, litter-size and treatment. The choice of fixed and random effects relied on three graphs: (1) a trellis display of mean live-weight vs. age, to select main effects and interactions (fixed effects); (2) a trellis display of individual growth curves, to decide which growth-curve terms should be included as random effects and (3) a scatter plot of parameters of lamb-specific regressions (live-weight vs. quadratic polynomial of age) to choose the random-effects covariance structure.Age, litter-size, agexlitter-size, litter-sizextreatment and agexlitter-sizextreatment were selected graphically as fixed effects and were significant (p<0.05) in subsequent statistical models. The selection of random-effect structures was guided by graphical assessment and comparison of the Akaike's information criterion for different models. The final random-effects selected included no random effect at the village level but intercept, age and squared-age at the herd and lamb levels. The structure of the random-effects variance-covariance matrices were blocked-diagonal at the herd level and unstructured at the lamb level. An order-1 autoregressive structure was retained to account for serial correlations of residuals. Smaller residual variance at 90 days than at younger ages was modeled with a dummy variable taking a value of 1 at 90 days and 0 elsewhere.Ewe-deworming with morantel during the rainy season lead to higher lamb live-weights (probably related to a better ewe-nutrition and -health status). A positive correlation was demonstrated between early weight and growth rate at the population level (with important lamb and herd-level random deviations). The persistence of this correlation at older ages should be checked to determine whether early weights are good predictors of mature weights and ewe-reproductive lifetime performance.

A steady-state approach of benefit-cost analysis with a periodic leslie-matrix model. Presentation and application to the evaluation of a sheep-diseases preventive scheme in Kolda, Senegal.

A seasonal population-dynamics matrix model (periodic Leslie-matrix model) was developed to model short production cycles and high seasonal variations occurring in demographic rates and offtake patterns for small ruminants. The year was split into 24- and 15-day phases. Population-size changes were modelled by the recurrence equation x(j+1)=B(j)x(j), where j was the 15-day phase, x an age-class population size vector and B a fecundity-, mortality-, offtake- and intake-rate matrix. Given an initial vector x(1), annual dynamics were described by x(25)=B(24)...B(1)x(1)=Ax(1), where A was the annual projection matrix.A steady-state hypothesis was used to estimate offtake gains and financial returns from a trial of pasteurellosis vaccination and anthelminthic drench in traditionally managed sheep flocks in Senegal, from July 1987 to June 1988. Nineteen villages and 76 herds were involved in the experiment. Villages were randomly allocated to one of the four treatment combinations in a factorial design, and subsequent demographic rates and net offtake patterns were measured. In the trial, vaccination had a negative effect on offtakes among females. No vaccination effect was observed for males. A positive effect of deworming was found for both sexes. From the trial data, our model calculated that the overall ratio of offtakes (i.e. number of animals) for dewormed over undrenched sheep was 1.2 (95% confidence interval: 1.1, 1.4). The deworming financial benefit-cost ratio was 3.7 (1.9, 5.4).

Interrelationships between herd management practices and udder health status using canonical correspondence analysis.

The relationships between the herd-level distribution of udder health measures (traumatic, physical, functional and congestive udder disorders, clinical mastitis and somatic cell counts (SCC) greater than 400 x 10(3) ml-1) and farm (general hygiene, milking practices and housing system) and aggregated individual characteristics were studied by canonical correspondence analysis (CCA). This is a correspondence-analysis technique in which the axes representing disease patterns are expressed as linear combinations of potentially explanatory variables. These main axes can be drawn so that the distribution of diseases for combinations of the main-explanatory managerial variables can be visualized. The type of quarantine for newcomers, type of animal housing, presence of shelter at pasture, use of udder towel before milking, milk production and loss of body condition after calving, were strongly correlated with udder health status. Mastitis and physical udder disorders were associated with the combination of no introduction of replacement heifers and low loss of body condition after calving. Congestive disorders were more common on farms when no quarantine for newcomers was combined with high loss of body condition after calving. Higher clinical and subclinical mastitis incidence risks were associated with the combination of no udder towel, loose housing with high animal density and high milk production. In most cases, clinical mastitis and high SCC were explained by the same covariates but with contrasting levels of those covariates.

[Characterization of the involvement of respiratory diseases in sheep herds in the Sahelian zone in Senegal]. / Caractérisation de l'atteinte par les affections respiratoires des troupeaux d'ovins de la zone sahélienne, au Sénégal.

A study was applied in traditionally raised small ruminants in the Senegal Sahelian zone, in order to define the breeding factors linked to respiratory disorders, and to suggest an efficient prevention scheme. A first analysis, which took into account the season, age, and sex effects, led to a definition of the importance of the disease in sheep using different parameters to characterize the pathology. The between-group variability will allow the identification of the factors linked to the disorder, among which breeding techniques may be of great importance.