An approach based on the total-species accumulation curve and higher taxon richness to estimate realistic upper limits in regional species richness.

Most of accumulation curves tend to underestimate species richness, as they do not consider spatial heterogeneity in species distribution, or are structured to provide lower bound estimates and limited extrapolations. The total-species (T-S) curve allows extrapolations over large areas while taking into account spatial heterogeneity, making this estimator more prone to attempt upper bound estimates of regional species richness. However, the T-S curve may overestimate species richness due to (1) the mismatch among the spatial units used in the accumulation model and the actual units of variation in ß-diversity across the region, (2) small-scale patchiness, and/or (3) patterns of rarity of species. We propose a new framework allowing the T-S curve to limit overestimation and give an application to a large dataset of marine mollusks spanning over 11 km2 of subtidal bottom (W Mediterranean). As accumulation patterns are closely related across the taxonomic hierarchy up to family level, improvements of the T-S curve leading to more realistic estimates of family richness, that is, not exceeding the maximum number of known families potentially present in the area, can be considered as conducive to more realistic estimates of species richness. Results on real data showed that improvements of the T-S curve to accounts for true variations in ß-diversity within the sampled areas, small-scale patchiness, and rarity of families led to the most plausible richness when all aspects were considered in the model. Data on simulated communities indicated that in the presence of high heterogeneity, and when the proportion of rare species was not excessive (>2/3), the procedure led to almost unbiased estimates. Our findings highlighted the central role of variations in ß-diversity within the region when attempting to estimate species richness, providing a general framework exploiting the properties of the T-S curve and known family richness to estimate plausible upper bounds in γ-diversity.

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing.

We investigated changes in the root-associated fungal communities associated with the ectomycorrhizal herb Bistorta vivipara along a primary succession gradient using 454 amplicon sequencing. Our main objective was to assess the degree of variation in fungal richness and community composition as vegetation cover increases along the chronosequence. Sixty root systems of B. vivipara were sampled in vegetation zones delimited by dated moraines in front of a retreating glacier in Norway. We extracted DNA from rinsed root systems, amplified the ITS1 region using fungal-specific primers and analysed the amplicons using 454 sequencing. Between 437 and 5063 sequences were obtained from each root system. Clustering analyses using a 98.5% sequence similarity cut-off yielded a total of 470 operational taxonomic units (OTUs), excluding singletons. Between eight and 41 fungal OTUs were detected within each root system. Already in the first stage of succession, a high fungal diversity was present in the B. vivipara root systems. Total number of OTUs increased significantly along the gradient towards climax vegetation, but the average number of OTUs per root system stayed unchanged. There was a high patchiness in distribution of fungal OTUs across root systems, indicating that stochastic processes to a large extent structure the fungal communities. However, time since deglaciation had impact on the fungal community structure, as a systematic shift in the community composition was observed along the chronosequence. Ectomycorrhizal basidiomycetes were the dominant fungi in the roots of B. vivipara, when it comes to both number of OTUs and number of sequences.

High diversity of root associated fungi in both alpine and arctic Dryas octopetala.

BACKGROUND: Dryas octopetala is a widespread dwarf shrub in alpine and arctic regions that forms ectomycorrhizal (ECM) symbiotic relationships with fungi. In this study we investigated the fungal communities associated with roots of D. octopetala in alpine sites in Norway and in the High Arctic on Svalbard, where we aimed to reveal whether the fungal diversity and species composition varied across the Alpine and Arctic regions. The internal transcribed spacer (ITS) region of nuclear ribosomal DNA was used to identify the fungal communities from bulk root samples obtained from 24 plants. RESULTS: A total of 137 operational taxonomic units (OTUs) were detected (using 97% similarity cut off during sequence clustering) and well-known ECM genera such as Cenococcum, Cortinarius, Hebeloma, Inocybe and Tomentella occurred frequently. There was no decrease in fungal diversity with increasing latitude. The overall spatial heterogeneity was high, but a weak geographical structuring of the composition of OTUs in the root systems was observed. Calculated species accumulation curves did not level off. CONCLUSIONS: This study indicates that the diversity of fungi associated with D. octopetala does not decrease in high latitude arctic regions, which contrasts observations made in a wide spectrum of other organism groups. A high degree of patchiness was observed across root systems, but the fungal communities were nevertheless weakly spatially structured. Non-asymptotical species accumulation curves and the occurrence of a high number of singletons indicated that only a small fraction of the fungal diversity was detected.

Geographic variation and acoustic structure of the underwater vocalization of harbor seal (Phoca vitulina) in Norway, Sweden and Scotland.

The male harbor seal (Phoca vitulina) produces broadband nonharmonic vocalizations underwater during the breeding season. In total, 120 vocalizations from six colonies were analyzed to provide a description of the acoustic structure and for the presence of geographic variation. The complex harbor seal vocalizations may be described by how the frequency bandwidth varies over time. An algorithm that identifies the boundaries between noise and signal from digital spectrograms was developed in order to extract a frequency bandwidth contour. The contours were used as inputs for multivariate analysis. The vocalizations' sound types (e.g., pulsed sound, whistle, and broadband nonharmonic sound) were determined by comparing the vocalizations' spectrographic representations with sound waves produced by known sound sources. Comparison between colonies revealed differences in the frequency contours, as well as some geographical variation in use of sound types. The vocal differences may reflect a limited exchange of individuals between the six colonies due to long distances and strong site fidelity. Geographically different vocal repertoires have potential for identifying discrete breeding colonies of harbor seals, but more information is needed on the nature and extent of early movements of young, the degree of learning, and the stability of the vocal repertoire. A characteristic feature of many vocalizations in this study was the presence of tonal-like introductory phrases that fit into the categories pulsed sound and whistles. The functions of these phrases are unknown but may be important in distance perception and localization of the sound source. The potential behavioral consequences of the observed variability may be indicative of adaptations to different environmental properties influencing determination of distance and direction and plausible different male mating tactics.

Growth, fecundity and sex ratio of adult whaleworm (Anisakis simplex; Nematoda, Ascaridoidea, Anisakidae) in three whale species from the North-East Atlantic.

The growth rate, fecundity, and sex ratio of Anisakis simplex in minke whales (Balaenoptera acutorostrata), porpoises (Phocoena phocoena) and long-finned pilot whales (Globicephala melas) was studied on the basis of material from the North Atlantic. A total of 8,135 mature A. simplex were collected from 24 minke whales, 11 porpoises and eight pilot whales. For both males and females, the prevalence was 100% for all three host species, with a mean intensity of 1,727, 262 and 139, respectively. The mean body length of adult female A. simplex was 126 mm in minke whales, 71 mm in the porpoises and 73 mm in pilot whales; and for males the averages were, respectively, 106 mm, 57 mm and 68 mm. Eggs from the uteri of 32 females of length 87-176 mm collected in minke whale stomachs were counted in a Fuchs-Rosenthal chamber. Total egg production was measured in 14 females cultivated at sea. The female growth period was estimated to be 30-60 days, and apparently all eggs were shed during the last week of life. A female of size 150 mm produces approximately 1.5 million eggs. In the cultivation experiment, about 85% of the total egg production was shed during the first 3 days after spawning started.

Influence of trophic position on organochlorine concentrations and compositional patterns in a marine food web.

The accumulation of polychlorinated biphenyls (PCBs), DDTs (p,p'-DDT [1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane], o,p'-DDT [1,1,1-trichloro-2-(2-chlorophenyl)-2-(4-chlorophenyl)ethane], p,p'-DDD [1,1,-dichloro-2,2-bis(4-chlorophenyl)ethane], o.p'-DDD [1,1-dichloro-2-(2-chlorophenyl)-2-(4-chlorophenyl)ethane], and p,p'-DDE [1,1-dichloro-2,2-bis(4-chlorophenyl)ethene]), chlordanes (trans-chlordane, cis-chlordane, trans-nonachlor, cis-nonachlor and oxychlordane), hexachlorocyclohexanes (alpha-, beta-, and gamma-isomers), hexachlorobenzene, and mirex was investigated in a marine food web from southeastern Norway. The food web consisted of the polychaete Nereis diversicolor, lesser sandeel (Ammodytes tobianus), three species of gobys (Gobiusculus flavescens, Pomatoschistus sp., and Gobius niger), bullrout (Myoxocephalus scorpius), cod (Gadus morhua), herring gull (Larus argentatus), and harbor seal (Phoca vitulina). The results show that interspecies differences in organochlorine (OC) compositional patterns in the food web depend on several factors (allometric, biochemical, physical, and physicochemical) specific to both the chemicals and the organisms. The importance of dietary accumulation and metabolic capacity increases toward higher trophic levels, while the OC patterns are to a larger extent determined by the lipophilicity and water solubility of the compounds at lower trophic levels. Furthermore, stable nitrogen isotopes provided a continuous measure of trophic position, rendering us capable of quantifying the increases in the concentrations of sigma PCB, sigma dichorodiphenyltrichloroethane (DDT), and sigma chlordane (CHL) and the percentages of highly chlorinated PCBs through the food web. The information provided may be important for future modeling of the fate of organochlorine contaminants in marine food webs.