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1.
Anal Chem ; 96(6): 2666-2675, 2024 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-38297457

RESUMEN

Fast liquid chromatography (LC) amino acid enantiomer separation of 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate (AQC) derivatives using a chiral core-shell particle tandem column with weak anion exchange and zwitterionic-type quinine carbamate selectors in less than 3 min was achieved. Enantiomers of all AQC-derivatized proteinogenic amino acids and some isomeric ones (24 in total plus achiral glycine) were baseline separated (Rs > 1.5 except for glutamic acid with Rs = 1.3), while peaks of distinct amino acids and structural isomers (constitutional isomers and diastereomers of leucine and threonine) of the same configuration overlapped to various degrees. For this reason, drift tube ion mobility-mass spectrometry was added (i.e., LC-IM-MS) as an additional selectivity filter without extending run time. The IM separation dimension in combination with high-resolution demultiplexing enabled confirmation of threonine isomers (threonine, allo-threonine, homoserine), while leucine, isoleucine, and allo-isoleucine have almost identical collisional cross-section (DTCCSN2) values and added no selectivity to the partial LC separation. Density functional theory (DFT) calculations show that IM separation of threonine isomers was possible due to conformational stabilization by hydrogen bond formation between the hydroxyl side chain and the urea group. Generally, the CCSN2 of protonated ions increased uniformly with addition of the AQC label, while outliers could be explained by consideration of intramolecular interactions and additional structural analysis. Preliminary validation of the enantioselective LC-IM-MS method for quantitative analysis showed compliance of accuracy and precision with common limits in bioanalytical methods, and applicability to a natural lipopeptide and a therapeutic synthetic peptide could be demonstrated.


Asunto(s)
Aminoácidos , Isoleucina , Aminoácidos/análisis , Cromatografía Líquida de Alta Presión/métodos , Estereoisomerismo , Leucina , Cromatografía Líquida con Espectrometría de Masas , Treonina , Iones
2.
Anal Chim Acta ; 1278: 341718, 2023 Oct 16.
Artículo en Inglés | MEDLINE | ID: mdl-37709429

RESUMEN

Phytosiderophores (PS) are root exudates released by grass species (Poaceae) that play a pivotal role in iron (Fe) plant nutrition. A direct determination of PS in biological samples is of paramount importance in understanding micronutrient acquisition mediated by PS. To date, eight plant-born PS have been identified; however, no analytical procedure is currently available to quantify all eight PS simultaneously with high analytical confidence. With access to the full set of PS standards for the first time, we report comprehensive methods to both fully characterize (IM-QTOFMS) and quantify (LC-ESI-MS/MS) all eight naturally occurring PS belonging to the mugineic acid family. The quantitative method was fully validated, yielding linear results for all eight analytes, and no unwanted interferences with soil and plant matrices were observed. LOD and LOQ values determined for each PS were below 11 and 35 nmol L-1, respectively. The method's precision under reproducibility conditions (intra- and inter-day) of measurement was less than 2.5% RSD for all analytes. Additionally, all PS were annotated with high-resolution mass spectrometric fragment spectra and further characterized via drift tube ion mobility-mass spectrometry. The collision cross-sections obtained for primary ion species yielded a valuable database for future research focused on in-depth PS studies. The new quantitative method was applied to analyse root exudates from Fe-controlled and deficient barley, oat, rye, and sorghum plants. All eight PS, including mugineic acid (MA), 3"-hydroxymugineic acid (HMA), 3"-epi-hydroxymugineic acid (epi-HMA), hydroxyavenic acid (HAVA), deoxymugineic acid (DMA), 3"-hydroxydeoxymugineic acid (HDMA), 3"-epi-hydroxydeoxymugineic acid (epi-HDMA) and avenic acid (AVA) were for the first time successfully identified and quantified in root exudates of various graminaceous plants using a single analytical procedure. These newly developed methods can be applied to studies aimed at improving crop yield and micronutrient grain content for food consumption via plant-based biofortification.


Asunto(s)
Poaceae , Espectrometría de Masas en Tándem , Reproducibilidad de los Resultados , Grano Comestible , Micronutrientes
3.
J Am Soc Mass Spectrom ; 34(9): 2051-2060, 2023 Sep 06.
Artículo en Inglés | MEDLINE | ID: mdl-37498108

RESUMEN

Formic acid (FA) is introduced as a potent dopant for atmospheric pressure chemical ionization (APCI) for ion mobility spectrometry (IMS) and mass spectrometry (MS). The mechanism of chemical ionization with the FA dopant was studied in the negative polarity using a corona discharge (CD)-IMS-MS technique in air. Standard reactant ions of the negative polarity present in air are O2-·(CO2)n·(H2O)m (m = 0, 1 and n = 1, 2) clusters. Introduction of the FA dopant resulted in the production of HCOO-·FA reactant ions. The effect of the FA dopant on the APCI of different classes of compounds was investigated, including plant hormones, pesticides, acidic drugs, and explosives. FA dopant APCI resulted in deprotonation and/or adduct ion formation, [M - H]- and [M + HCOO]-, respectively. Supporting density functional theory (DFT) calculations showed that the ionization mechanism depended on the gas-phase acidity of the compounds. FA dopant APCI led to the improvement of detection sensitivity, suppression of fragmentation, and changes in the ion mobilities of the analyte ions for analytes with suitable molecular structures and gas acidity.

4.
Phys Chem Chem Phys ; 25(30): 20749-20758, 2023 Aug 02.
Artículo en Inglés | MEDLINE | ID: mdl-37490344

RESUMEN

Aminobenzoic acids are well-established candidates for understanding the formation of isomeric ions in positive mode electrospray ionization as they yield both N- and O-protomers (prototropic isomers) at the amine and carbonyl sites, respectively. In the present work, a combination of ion mobility-mass spectrometry and density functional theory calculations to determine the protonation and deprotonation behaviour of four diamino benzoic acid and four aminophthalic acid isomers is presented. The additional COOH group on the ring of aminophthalic acids provides experimental evidence regarding the mechanism of intramolecular NH3+ → O proton transfer, which has been the subject of debate in recent years. To determine the proton acceptor O atom, ion mobility spectra of the fragments of protomers were used as a new method for the confidential assignment of the O-protomer structure, confirming only short-distance intramolecular NH3+ → O proton transfer. Additionally, the substitution pattern both influences the basicity of the protonation sites and enables these molecules to form internal hydrogen bonds with the protonated or deprotonated sites. The formation of the hydrogen bonds in the deprotonated aminophthalic acids changed the charge distribution and subsequently their ion mobility-derived collision cross sections in nitrogen (CCSN2) leading to separation of the four isomers studied. Finally, an interesting effect of the substitution pattern was observed as a synergistic electron-donating effect of the amine groups of 3,5-diaminobenzoic acid on enhancing the basicity of the carbon atom C2 of the ring and previously unreported formation of a C-protomer within aminobenzoic acid systems.

5.
Chem Commun (Camb) ; 59(12): 1673-1676, 2023 Feb 07.
Artículo en Inglés | MEDLINE | ID: mdl-36689277

RESUMEN

Here, we show how intramolecular proton transfer can be induced and monitored with the example of polycyclic aromatic amines using in-source ion-activation and ion mobility-mass spectrometry. Experiment and DFT calculations reveal that the protonation rate of C-atoms in aromatic rings is controlled by the energy barrier of intramolecular NH3+ → C proton transfer.

6.
J Agric Food Chem ; 70(49): 15593-15601, 2022 Dec 14.
Artículo en Inglés | MEDLINE | ID: mdl-36459422

RESUMEN

Methyl salicylate (MeSA) is a plant-signaling molecule that plays an essential role in the regulation of plant responses to biotic and abiotic pathogens. In this work, solid phase microextraction (SPME) and a multicapillary column (MCC) are coupled to ion mobility spectrometry (IMS) to detect MeSA in tomato leaves. The SPME-MCC-IMS method provides two-dimensional (2D) separation by both MCC and IMS, based on the retention and drift times. The effect of the IMS polarity on the separation efficiency of MCCs was also investigated. In the positive polarity, ionization of MeSA resulted in [MeSA + H]+ formation while, in the negative, deprotonated ions, [MeSA - H]-, and the O2- adduct ion, [MeSA + O2]-, were formed. In the real sample analysis, the negative polarity operation resulted in the suppression of many matrix molecules and thus in the reduction of interferences. Four different SPME fibers were used for head space analysis, and four MCC columns were investigated. In the negative polarity, complete separation was achieved for all of the MCCs columns. The limits of detection (LODs) of 0.1 µg mL-1 and linear range of 0.25-12 µg mL-1 were obtained for the measurement of MeSA in a standard solution (H2O/CH3OH, 50:50) by the SPME-IMS method with a 5 min extraction time using an SPME with a PDMS fiber, in the negative mode of IMS. The MeSA contents of fresh tomato leaves were determined as 1.5-9.8 µg g-1, 24-96 h after inoculation by tomato mosaic ringspot virus (ToRSV).


Asunto(s)
Solanum lycopersicum , Microextracción en Fase Sólida , Microextracción en Fase Sólida/métodos , Espectrometría de Movilidad Iónica , Iones/química , Hojas de la Planta
7.
Anal Bioanal Chem ; 414(25): 7483-7493, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-35960317

RESUMEN

The major benefits of integrating ion mobility (IM) into LC-MS methods for small molecules are the additional separation dimension and especially the use of IM-derived collision cross sections (CCS) as an additional ion-specific identification parameter. Several large CCS databases are now available, but outliers in experimental interplatform IM-MS comparisons are identified as a critical issue for routine use of CCS databases for identity confirmation. We postulate that different routine external calibration strategies applied for traveling wave (TWIM-MS) in comparison to drift tube (DTIM-MS) and trapped ion mobility (TIM-MS) instruments is a critical factor affecting interplatform comparability. In this study, different external calibration approaches for IM-MS were experimentally evaluated for 87 steroids, for which TWCCSN2, DTCCSN2 and TIMCCSN2 are available. New reference CCSN2 values for commercially available and class-specific calibrant sets were established using DTIM-MS and the benefit of using consolidated reference values on comparability of CCSN2 values assessed. Furthermore, use of a new internal correction strategy based on stable isotope labelled (SIL) internal standards was shown to have potential for reducing systematic error in routine methods. After reducing bias for CCSN2 between different platforms using new reference values (95% of TWCCSN2 values fell within 1.29% of DTCCSN2 and 1.12% of TIMCCSN2 values, respectively), remaining outliers could be confidently classified and further studied using DFT calculations and CCSN2 predictions. Despite large uncertainties for in silico CCSN2 predictions, discrepancies in observed CCSN2 values across different IM-MS platforms as well as non-uniform arrival time distributions could be partly rationalized.


Asunto(s)
Calibración , Cromatografía Liquida , Espectrometría de Masas/métodos , Estándares de Referencia
8.
Anal Bioanal Chem ; 414(20): 6259-6269, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-35794348

RESUMEN

Ion mobility spectrometry (IMS) equipped with a corona discharge (CD) ion source was used for measurement of three auxin plant hormones including indole-3-acetic acid (IAA), indole-3-propionic acid (IPA), and indole-3-butyric acid (IBA). The measurements were performed in both positive and negative polarities of the CD ion source. Dopant gases NH3, CCl4, and CHBr3 were used to modify the ionization mechanism. A time-of-flight mass spectrometer (TOFMS) orthogonal to the IMS cell was used for identification of the product ions. Density functional theory was used to rationalize formation of the ions, theoretically. The mixtures of the auxins were analyzed by CD-IMS. The separation performance depended on the ion polarity and the dopants. In the positive polarity without dopants, auxins were ionized via protonation and three distinguished peaks were observed. Application of NH3 dopant resulted in two ionization channels, protonation, and NH4+ attachment leading to peak overlapping. In the negative polarity, two ionization reactions were operative, via deprotonation and O2- attachment. The separation of the monomer peaks was not achieved while the peaks of anionic dimers [2 M-H]- were separated well. The best LOD (4 ng) was obtained in negative polarity with CCl4 dopant. Methylation (esterification) of IAA improved LODs by about one order.


Asunto(s)
Espectrometría de Movilidad Iónica , Reguladores del Crecimiento de las Plantas , Ácidos Indolacéticos , Iones/química , Espectrometría de Masas/métodos
9.
J Am Soc Mass Spectrom ; 33(6): 961-973, 2022 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-35562191

RESUMEN

Ionization of organic compounds with different structural and energetic properties including benzene derivatives, polycyclic aromatic hydrocarbons (PAHs), ketones, and polyenes was studied using a commercial atmospheric pressure corona discharge (APCI) ion source on a drift tube ion mobility-quadrupole-time-of-flight mass spectrometer (IM-QTOFMS). It was found that the studied cohort of compounds can be experimentally ionized via protonation, charge transfer, and hydride abstraction leading to formation of [M + H]+, [M]+•, and [M - H]+ species, respectively. By experimentally monitoring the product ions and comparing the thermodynamic data for different ionization paths, it was proposed that NO+ is one of the main reactant ions (RIs) in the ion source used. Of particular focus in this work were theoretical and experimental studies of the effect of solvents frequently used for analytical applications with this ion source (acetonitrile, methanol, and chloroform) on the ionization mechanisms. In methanol, the studied compounds were observed to be ionized mainly via proton transfer while acetonitrile suppressed the protonation of compounds and enhanced their ionization via charge transfer and hydride abstraction. Use of chloroform as a solvent led to formation of CHCl2+ as an alternative reactant ion (RI) to ionize the analytes via electrophilic substitution. Density functional theory (DFT) was used to study the different paths of ionization. The theoretical and experimental results showed that by using only the absolute thermodynamic data, the real ionization path cannot be determined and the energies of all competing processes such as charge transfer, protonation, and hydride abstraction need to be compared.


Asunto(s)
Cloroformo , Metanol , Acetonitrilos , Presión Atmosférica , Humanos , Iones/química , Protones , Solventes
10.
J Pharm Biomed Anal ; 197: 113980, 2021 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-33636645

RESUMEN

Gabapentin is a pharmacological agent used in the treatment of epileptic seizures. In this work, a fast method is proposed for determination of gabapentin in urine by ion mobility spectrometry (IMS) without any extraction and derivatization. ZnCl2 was used as an effective protein precipitating reagent to remove the urine proteins. It was found that urea content of urine interferes with detection of gabapentin by IMS. By applying a delay on the carrier gas flow after injection of the sample, we could solve the urea interference to achieve gabapentin signal recovery of ∼70% in urine relative to that in water.


Asunto(s)
Espectrometría de Movilidad Iónica , Gabapentina
11.
Rapid Commun Mass Spectrom ; 35(6): e9044, 2021 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-33410177

RESUMEN

RATIONALE: Morphine and codeine are two important compounds of the opiate family that have vast applications in medicine. Several techniques have been reported for the determination of these opiates. Although ion mobility spectrometry (IMS) in positive ion mode can be applied for detection of both morphine and codeine, this technique on its own cannot detect a mixture of these two compounds because of the overlapping of their peaks. METHODS: An IMS instrument equipped with a corona discharge ion source operating in negative ion mode was used for the detection of anionic clusters of morphine and codeine. In normal negative ion mode, NOx - , CO3 - , and On - act as the main reactant ions (RIs) which can deprotonate the analytes. We also used chloroform as a dopant to produce Cl- as an alternative RI. RESULTS: Morphine has a phenolic and an alcoholic OH group, while codeine bears only an alcoholic OH group. Because the phenolic OH group is more acidic, only morphine is deprotonated in negative ion mode in a morphine/codeine mixture. Furthermore, since morphine has two OH groups that can act as hydrogen-bond donors, it acts as an anion receptor. Hence, in the presence of chloroform where Cl- acts as the RI, morphine traps the Cl- anion to form a morphine-Cl- (Mor.Cl- ) adduct ion, while because of its structure codeine does not have this capability. CONCLUSIONS: Using the difference in the structures of morphine and codeine, two ionization methods were proposed for selective detection of morphine. Morphine is more acidic than codeine and has greater anion-receiving capability than codeine. Hence, it can both be deprotonated and form a adduct anion with Cl- . The Cl- attachment method is recommended for measurements at ambient temperature.


Asunto(s)
Cloruros/análisis , Codeína/análisis , Morfina/análisis , Analgésicos Opioides/análisis , Espectrometría de Movilidad Iónica
12.
J Chromatogr A ; 1634: 461676, 2020 Dec 20.
Artículo en Inglés | MEDLINE | ID: mdl-33221652

RESUMEN

A rapid and simple method is proposed for detection of elemental mercury (Hg) vapor by ion mobility spectrometry (IMS). Negative corona discharge (CD) as the ionization source and chloroform as the dopant gas were used to produce Cl- reactant ion. A mass spectrum of the product ions confirmed that the mechanism of ionization is based on Cl- anion attachment to Hg and formation of HgCl- ion. It was found that the optimum drift gas temperature for Hg detection was about 160 °C and the drift gas flow rate should be minimized and just sufficient to clear contaminants and carry-over from the drift cell. The drift time of the HgCl- peak relative to that of the Cl- peak at 160 °C is 1.52 ms corresponding to the reduced mobility of 1.90 cm2/Vs. Because many volatile organic compounds (VOCs) such as alcohols, amines, aldehydes, ketones, and alkanes are not ionized in the negative mode of CD-IMS, these compounds do not interfere with the detection of Hg. Mercaptans peaks also did not show any interference with the Hg signal. Hence, the method is highly selective for detection of Hg in natural gas containing sulfur compounds. The detection limit of Hg obtained by the proposed method was 0.07 mg/m3. The method was successfully verified in determination of the mercury vapor content of a fluorescent lamp, as a real sample.


Asunto(s)
Técnicas de Química Analítica/métodos , Cloroformo/química , Gases/análisis , Espectrometría de Movilidad Iónica , Mercurio/análisis , Alcoholes , Técnicas de Química Analítica/instrumentación , Gases/química , Iones/química , Gas Natural/análisis , Compuestos de Azufre/química , Temperatura , Compuestos Orgánicos Volátiles/análisis
13.
J Mass Spectrom ; 55(10): e4586, 2020 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-32720743

RESUMEN

Atmospheric pressure chemical ionizations (APCIs) of morphine, codeine, and thebaine were studied in a corona discharge ion source using ion mobility spectrometry (IMS) at temperature range of 100°C-200°C. Density functional theory (DFT) at the B3LYP/6-311++G(d,p) and M062X/6-311++G(d,p) levels of theory were used to interpret the experimental data. It was found that in the presence of H3 O+ as reactant ion (RI), ionization of morphine and codeine proceeds via both the protonation and carbocation formation, whereas thebaine participates only in protonation. Carbocation formation (fragmentation) was diminished with decrease in the temperature. At lower temperatures, proton-bound dimers of the compounds were also formed. Ammonia was used as a dopant to produce NH4 + as an alternative RI. In the presence of NH4 + , proton transfer from ammonium ion to morphine, codeine, and thebaine was the dominant mechanism of ionization. However, small amount of ammonium attachment was also observed. The theoretical calculations showed that nitrogen atom of the molecules is the most favorable proton acceptor site while the oxygen atoms participate in ammonium attachment. Furthermore, formation of the carbocations is because of the water elimination from the protonated forms of morphine and codeine.


Asunto(s)
Codeína/química , Espectrometría de Movilidad Iónica/métodos , Morfina/química , Narcóticos/química , Tebaína/química , Compuestos de Amonio/química , Presión Atmosférica , Modelos Moleculares , Protones
14.
Anal Chem ; 92(11): 7924-7931, 2020 06 02.
Artículo en Inglés | MEDLINE | ID: mdl-32394705

RESUMEN

Ion mobility spectra of citric acid (CA) are complex, and several peaks are observed for CA and its fragments in both the positive and negative modes. Using DFT calculations, we found that the fragments are both less acidic and less basic than CA in gas phase. Hence, we used a strong base, NH3, in positive mode to produce NH4+ as an alternative reactant ion (RI) and prevent protonation of the fragments. In the presence of NH4+, only one peak for CA was observed because of its higher proton affinity (873 kJ mol-1) compared to NH3 (854 kJ mol-1). In the negative mode, CHCl3, CHBr3, and CHI3 were used as dopant gases to produce Cl-, Br-, and I- as RIs. These halides have less basicity than the common RIs in negative mode (NO2-, NO3-, O2-) and selectively deprotonated CA in the presence of its fragments. Hence, using dopants with appropriate basicity, we could suppress the fragment peaks and obtain a plain IMS spectrum for CA containing only one peak in both the positive and negative modes. Using NH3 and CHCl3 dopants, the amount of CA in fresh lemon juice was determined as 39.5-42 g L-1 by direct injection without any purification. The effect of hydration of the reactant and product ions on the ionization mechanism in both negative and positive modes was investigated theoretically.

15.
J Phys Chem A ; 124(17): 3386-3397, 2020 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-32298115

RESUMEN

The ionization of tartaric acid (TA) in an atmospheric pressure chemical ionization corona discharge ion source was studied by ion mobility spectrometry (IMS) with zero air as the drift gas. Density functional theory was used for structural and thermodynamic analyses of the produced ionic clusters. Ion mobility spectra of TA were recorded in both positive and negative modes of CD with and without ammonia and chloroform as dopants in order to produce NH4+ and Cl-, respectively, as the reactant ions (RIs). In the absence of these dopants, the RIs were mainly H3O+ and O2- in the positive and negative CD, respectively. TA solutions in water and methanol were injected into the ionization region of the IMS instrument, and the product cations TA·H+(H2O)n, TA·H+(CH3OH), TA·NH4+, and TA·NH4+(CH3OH) were observed in the positive CD. Anionic clusters (TA-H)-, (TA-H)-·CH3OH, (TA-H)-·TA, TA·Cl-, and (TA)2Cl- were produced in the negative CD. The anions TA·Cl- and (TA)2Cl- were not produced in an air atmosphere, and we observed their peaks when pure oxygen was used as the drift gas. Optimized structures of the clusters showed that TA·NH4+, TA·Cl-, and (TA)2Cl- are small host-guest systems in the gas phase, with TA as a host. (TA)2Cl- is a weakly bonded complex (an anion-bound dimer) that was observed at atmospheric pressure. The proton-bound dimer TA·H+·TA was not produced in the positive CD, while the anionic dimer (TA-H)-·TA was observed in the negative CD. This phenomenon was interpreted on the basis of the hydration of TA·H+ and (TA-H)-.

16.
J Am Soc Mass Spectrom ; 30(7): 1242-1253, 2019 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-31049871

RESUMEN

Protonation, hydration, and cluster formation of ammonia, formaldehyde, formic acid, acetone, butanone, 2-ocatanone, 2-nonanone, acetophenone, ethanol, pyridine, and its derivatives were studied by IMS-TOFMS technique equipped with a corona discharge ion source. It was found that tendency of the protonated molecules, MH+, to participate in hydration or cluster formation depends on the basicity of M. The molecules with higher basicity were hydrated less than those with lower basicity. The mass spectra of the low basic molecules such as formaldehyde exhibited larger clusters of MnH+(H2O)n, while for compounds with high basicity such as pyridine, only MH+ and MH+M peaks were observed. The results of DFT calculations show that enthalpies of hydrations and cluster formation decrease as basicities of the molecules increases. Using comparison of mass spectra of formic acid, formaldehyde, and ethanol, effect of structure on the cluster formation was also investigated. Formation of symmetric (MH+M) and asymmetric proton-bound dimers (MH+N) was studied by ion mobility and mass spectrometry techniques. Both theoretical and experimental results show that asymmetric dimers are formed more easily between molecules (M and N) with comparable basicity. As the basicity difference between M and N increases, the enthalpy of MH+N formation decreases.

17.
J Phys Chem A ; 123(1): 313-322, 2019 Jan 10.
Artículo en Inglés | MEDLINE | ID: mdl-30569714

RESUMEN

Ionization of 2-nonanone, cyclopentanone, acetophenone, pyridine, and di- tert-butylpyridine (DTBP) in a corona discharge (CD) atmospheric pressure chemical ionization (APCI) ion source was studied using ion mobility (IMS) and time-of-flight mass spectrometry (TOF-MS). The IMS and MS spectra were recorded in the absence and presence of ammonia dopant. Without NH3 dopant, the reactant ion (RI) was H+(H2O) n, n = 3,4, and the MH+(H2O) x clusters were produced as product ions. Modeling of hydration shows that the amount of hydration ( x) depends on basicity of M, temperature and water concentration of drift tube. In the presence of ammonia (NH4+(H2O) n as RI) two kinds of product ions, MH+(H2O) x and MNH4+(H2O) x, were produced, depending on the basicity of M. With NH4+(H2O) n as RI, the product ions of pyridine and DTBP with higher basicity were MH+(H2O) x while cyclopentanone, 2-nonanone, and acetophenone with lower basicity produce MNH4+(H2O) x. To interpret the formation of product ions, the interaction energies of M-H+, H+-NH3, and H+-OH2 in the M-H+-NH3 and M-H+-OH2 and M-H+-M complexes were computed by B3LYP/6-311++G(d,p) method. It was found that for a molecule M with high basicity, the M-H+ interaction is strong leading in weakening of the H+-NH3, and H+-OH2 interactions in the M-H+-NH3 and M-H+-OH2 complexes.

18.
J Mol Graph Model ; 80: 104-112, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29328991

RESUMEN

Aromaticities and stabilities of ortho, meta, and para isomers of some derivatives of benzene, C5H5- and C7H7+ were studied and compared basis on the NICS index and their relative energies. For the benzene and C7H7+ derivatives, the ortho isomers with less stability were more aromatic. This discrepancy was also observed for the molecules with conjugated and non-conjugated π-electrons. However, for the charged conjugated systems, the structures with delocalized charge were more stable. Effect of electron withdrawing (EWGs) and electron donating groups (EDGs) on the electron delocalization and stability of the neutral and charged molecules was investigated. It was observed that the EWDs and EDGs change the stability trend of the neutral systems, while in the case of charged molecules, the isomers with delocalized charge were more stable regardless of the type of substituents. Although both π-electron delocalization and charge delocalization stabilize the aromatic and conjugated systems, effect of charge delocalization on the stability is more than that of π-electron delocalization.


Asunto(s)
Benceno/química , Electrones , Derivados del Benceno/química , Isomerismo , Modelos Moleculares
19.
ACS Omega ; 3(9): 11331-11339, 2018 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-31459241

RESUMEN

Interaction of H2O, H2S, H2Se, NH3, PH3, and AsH3 with cations H+, CH3 +, Cu+, Al+, Li+, Na+, and K+ was studied from the energetic and structural viewpoint using B3LYP/6-311++G(d,p) method. The charge transfer from the Lewis bases to the cations reduces lone pair/lone pair (LP/LP) repulsion in H2O, H2S, and H2Se and LP/bond pair (LP/BP) repulsion in NH3, PH3, and AsH3. In parallel, changes in the H-M-H angles (M = O, S, Se, N, P, and As) are observed. The change in the H-M-H angle during the interactions was proportional to the amount of charge transferred from the bases to the cations and electron density (ρ) at the molecule/cation bond critical point. Also, the opposite trend for proton affinities of these two families, that is, NH3 > PH3 > AsH3 and H2O < H2S < H2Se, was interpreted on the basis of LP/BP repulsion in their neutral and protonated forms. Interaction of the Lewis bases with neutral Lewis acids including BeH2, BeF2, and BH3 was studied energetically and structurally. The calculated energies for interactions of H2O and NH3 with BeH2, BeF2, and BH3 are larger than the corresponding values for H2S, H2Se, PH3, and AsH3. This difference was interpreted on the basis of the lower stability of H2O and NH3 because of large LP/LP and LP/BP repulsion in H2O and LP/BP repulsion in NH3.

20.
J Phys Chem A ; 121(36): 6810-6822, 2017 Sep 14.
Artículo en Inglés | MEDLINE | ID: mdl-28872316

RESUMEN

Relationship between the C═O-X+ (X = H, Li, Na, K, Al, Cu) angle and covalent characteristic of the X+-M (M = CH2O, CH3CHO, acetone, imidazol-2-one (C2H2N2O), cytosine, γ-butyrolactone) was investigated, theoretically. The calculated electron densities ρ at the bond critical points revealed that the covalency of the M-X+ interaction depended on the nature of the cation and varied as H+ > Cu+ > Al+ > Li+ > Na+ > K+. The alkali cations tended to participate in electrostatic interactions and aligned with the direction of the molecule dipole or local dipole of C═O group to form linear C═O-X geometries. Because of overlapping with lone-pair electrons of the sp2 carbonyl oxygen, the H+ and Cu+ formed a bent C═O-X angle. Al+ displayed an intermediate behavior; the C═O-Al angle was 180° in [CH2O/Al]+ (mainly electrostatic), but when the angle was bent (146°) under the effect of local dipole of an adjacent imine group in cytosine, the covalency of the CO-Al+ interaction increased. The C═O-X angles in M/X+ adduct ions were scanned in different O-X bond lengths. It was found that the most favorable C═O-X angle depended on the O-X bond length. This dependency was attributed to variation of covalent and electrostatic contributions with O-X distance. In addition, the structures of [CH2S/X]+ and [CH2Se/X]+ were studied, and only bent C═S-X and C═Se-X angles were obtained for all cations, although the dipole vectors of CH2S and CH2Se coincide with the C═S and C═Se bonds. The bending of the C═S-X and C═Se-X angles was attributed to the covalent characteristic of S-X and Se-X interactions due to high polarizability of S and Se atoms.

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