CloMet: A Novel Open-Source and Modular Software Platform That Connects Established Metabolomics Repositories and Data Analysis Resources.

The field of metabolomics has witnessed the development of hundreds of computational tools, but only a few have become cornerstones of this field. While MetaboLights and Metabolomics Workbench are two well-established data repositories for metabolomics data sets, Workflows4Metabolomics and MetaboAnalyst are two well-established web-based data analysis platforms for metabolomics. Yet, the raw data stored in the aforementioned repositories lack standardization in terms of the file system format used to store the associated acquisition files. Consequently, it is not straightforward to reuse available data sets as input data in the above-mentioned data analysis resources, especially for non-expert users. This paper presents CloMet, a novel open-source modular software platform that contributes to standardization, reusability, and reproducibility in the metabolomics field. CloMet, which is available through a Docker file, converts raw and NMR-based metabolomics data from MetaboLights and Metabolomics Workbench to a file format that can be used directly either in MetaboAnalyst or in Workflows4Metabolomics. We validated both CloMet and the output data using data sets from these repositories. Overall, CloMet fills the gap between well-established data repositories and web-based statistical platforms and contributes to the consolidation of a data-driven perspective of the metabolomics field by leveraging and connecting existing data and resources.

Analysis and Acoustic Event Classification of Environmental Data Collected in a Citizen Science Project.

Citizen science can serve as a tool to obtain information about changes in the soundscape. One of the challenges of citizen science projects is the processing of data gathered by the citizens, to obtain conclusions. As part of the project Sons al Balcó, authors aim to study the soundscape in Catalonia during the lockdown due to the COVID-19 pandemic and afterwards and design a tool to automatically detect sound events as a first step to assess the quality of the soundscape. This paper details and compares the acoustic samples of the two collecting campaigns of the Sons al Balcó project. While the 2020 campaign obtained 365 videos, the 2021 campaign obtained 237. Later, a convolutional neural network is trained to automatically detect and classify acoustic events even if they occur simultaneously. Event based macro F1-score tops 50% for both campaigns for the most prevalent noise sources. However, results suggest that not all the categories are equally detected: the percentage of prevalence of an event in the dataset and its foregound-to-background ratio play a decisive role.

Edge-Computing Meshed Wireless Acoustic Sensor Network for Indoor Sound Monitoring.

This work presents the design of a wireless acoustic sensor network (WASN) that monitors indoor spaces. The proposed network would enable the acquisition of valuable information on the behavior of the inhabitants of the space. This WASN has been conceived to work in any type of indoor environment, including houses, hospitals, universities or even libraries, where the tracking of people can give relevant insight, with a focus on ambient assisted living environments. The proposed WASN has several priorities and differences compared to the literature: (i) presenting a low-cost flexible sensor able to monitor wide indoor areas; (ii) balance between acoustic quality and microphone cost; and (iii) good communication between nodes to increase the connectivity coverage. A potential application of the proposed network could be the generation of a sound map of a certain location (house, university, offices, etc.) or, in the future, the acoustic detection of events, giving information about the behavior of the inhabitants of the place under study. Each node of the network comprises an omnidirectional microphone and a computation unit, which processes acoustic information locally following the edge-computing paradigm to avoid sending raw data to a cloud server, mainly for privacy and connectivity purposes. Moreover, this work explores the placement of acoustic sensors in a real scenario, following acoustic coverage criteria. The proposed network aims to encourage the use of real-time non-invasive devices to obtain behavioral and environmental information, in order to take decisions in real-time with the minimum intrusiveness in the location under study.

Multilabel Acoustic Event Classification Using Real-World Urban Data and Physical Redundancy of Sensors.

Many people living in urban environments nowadays are overexposed to noise, which results in adverse effects on their health. Thus, urban sound monitoring has emerged as a powerful tool that might enable public administrations to automatically identify and quantify noise pollution. Therefore, identifying multiple and simultaneous acoustic sources in these environments in a reliable and cost-effective way has emerged as a hot research topic. The purpose of this paper is to propose a two-stage classifier able to identify, in real time, a set of up to 21 urban acoustic events that may occur simultaneously (i.e., multilabel), taking advantage of physical redundancy in acoustic sensors from a wireless acoustic sensors network. The first stage of the proposed system consists of a multilabel deep neural network that makes a classification for each 4-s window. The second stage intelligently aggregates the classification results from the first stage of four neighboring nodes to determine the final classification result. Conducted experiments with real-world data and up to three different computing devices show that the system is able to provide classification results in less than 1 s and that it has good performance when classifying the most common events from the dataset. The results of this research may help civic organisations to obtain actionable noise monitoring information from automatic systems.

Real-Time Distributed Architecture for Remote Acoustic Elderly Monitoring in Residential-Scale Ambient Assisted Living Scenarios.

Ambient Assisted Living (AAL) has become a powerful alternative to improving the life quality of elderly and partially dependent people in their own living environments. In this regard, tele-care and remote surveillance AAL applications have emerged as a hot research topic in this domain. These services aim to infer the patients' status by means of centralized architectures that collect data from a set of sensors deployed in their living environment. However, when the size of the scenario and number of patients to be monitored increase (e.g., residential areas, retirement homes), these systems typically struggle at processing all associated data and providing a reasonable output in real time. The purpose of this paper is to present a fog-inspired distributed architecture to collect, analyze and identify up to nine acoustic events that represent abnormal behavior or dangerous health conditions in large-scale scenarios. Specifically, the proposed platform collects data from a set of wireless acoustic sensors and runs an automatic two-stage audio event classification process to decide whether or not to trigger an alarm. Conducted experiments over a labeled dataset of 7116 s based on the priorities of the Fundació Ave Maria health experts have obtained an overall accuracy of 94.6%.