A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set.

PREMISE: To further advance the understanding of the species-rich, economically and ecologically important angiosperm order Myrtales in the rosid clade, comprising nine families, approximately 400 genera and almost 14,000 species occurring on all continents (except Antarctica), we tested the Angiosperms353 probe kit. METHODS: We combined high-throughput sequencing and target enrichment with the Angiosperms353 probe kit to evaluate a sample of 485 species across 305 genera (76% of all genera in the order). RESULTS: Results provide the most comprehensive phylogenetic hypothesis for the order to date. Relationships at all ranks, such as the relationship of the early-diverging families, often reflect previous studies, but gene conflict is evident, and relationships previously found to be uncertain often remain so. Technical considerations for processing HTS data are also discussed. CONCLUSIONS: High-throughput sequencing and the Angiosperms353 probe kit are powerful tools for phylogenomic analysis, but better understanding of the genetic data available is required to identify genes and gene trees that account for likely incomplete lineage sorting and/or hybridization events.

Identifying fossil Myrtaceae leaves: the first described fossils of Syzygium from Australia.

PREMISE OF THE STUDY: Although leaves of Myrtaceae are easily identified to family level, very few studies have convincingly identified fossil Myrtaceae leaves to living genera. We used a broadly comparative approach with a large data set of extant taxa to confidently assign the mummified remains of myrtaceous leaves from early Miocene sediments at Kiandra (New South Wales, Australia) to a living genus. METHODS: Fossils were identified using a nearest living relative approach, against a database of 232 extant broadleaf rainforest species of Myrtaceae. Leaf cuticles were prepared from 106 species, sourced from herbarium specimens as well as some living individuals, and a further 127 records were assembled from the literature. A set of simple but phylogenetically informative cuticular characters were observed, described, and recorded under both scanning electron microscopy and standard light microscopy. KEY RESULTS: A new fossil species of Syzygium Gaertn. is described from mummified remains found in early Miocene (21.5-21.7 Ma) sediments. The fossil taxon is here named Syzygium christophelii sp. nov., in honor of the late Australian paleobotanist David Christophel. CONCLUSIONS: These fossils represent some of the most confidently described Myrtaceae leaf fossils published to date and are the first and oldest described fossil record of Syzygium from Australia. While several fossil parataxa have been illustrated from New Zealand, and several fossil species of Syzygium have previously been proposed in the literature, many of these fossils lack characters for a confident diagnosis.

Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species.

Speciation is a complex process that is fundamental to the origins of biological diversity. While there has been considerable progress in our understanding of speciation, there are still many unanswered questions, especially regarding barriers to gene flow in diverging populations. Eucalyptus is an appropriate system for investigating speciation mechanisms since it comprises species that are rapidly evolving across heterogeneous environments. We examined patterns of genetic variation within and among six closely related Eucalyptus species in subgenus Eucalyptus section Eucalyptus in south-eastern Australia (commonly known as the "green ashes"). We used reduced representation genome sequencing to genotype samples from populations across altitudinal and latitudinal gradients. We found one species, Eucalyptus cunninghamii, to be highly genetically differentiated from the others, and a population of mallees from Mount Banks to be genetically distinct and therefore likely to be a new undescribed species. Only modest levels of differentiation were found between all other species in the study. There was population structure within some species (e.g., E. obstans) corresponding to geographical factors, indicating that vicariance may have played a role in the evolution of the group. Overall, we found that lineages within the green ashes are differentiated to varying extents, from strongly diverged to much earlier stages of the speciation continuum. Furthermore, our results suggest the green ashes represent a group where a range of mechanisms (e.g., reticulate evolution and vicariance) have been operating in concert. These findings not only offer insights into recent speciation mechanisms in Eucalyptus, but also other species complexes.

Seedling response to environmental variability: The relationship between phenotypic plasticity and evolutionary history in closely related Eucalyptus species.

PREMISE OF THE STUDY: Phenotypic plasticity is an important means through which organisms cope with environmental variability. We investigated seedling plasticity in the green ash eucalypts within a phylogenetic framework to examine the relationship between plasticity and evolutionary history. The green ashes are a diverse group, which include the tallest flowering plant in the world (Eucalyptus regnans) and a rare mallee less than 1 m tall (E. cunninghamii). METHODS: Seedlings of 12 species were exposed to high and low nutrient and water availability in a factorial experiment. Leaf trait and total plant plasticity were evaluated using the phenotypic plasticity index. A phylogeny of the species was estimated using genome-wide scans. KEY RESULTS: We found significant differences in functional traits across species, growth forms, and substrates in response to changes in resource availability. Many traits (e.g., leaf width) were highly plastic for most species. Interspecific differences in leaf-level plasticity was significant, however plasticity was not correlated with phylogeny. Species with broader environmental niches had higher leaf-level plasticity than species with narrower environmental ranges. CONCLUSIONS: Plastic responses to environmental variability can differ widely among closely related species, and plasticity is therefore likely to be associated with many factors, including habitat and range size, as well as evolutionary history. Our results provided insights for species delimitation in Eucalyptus, which have management implications. Because of the high number of rare species and that other species are commercially important, a more comprehensive understanding of plasticity is essential for predicting their response to changing climates.

Two fossil species of Metrosideros (Myrtaceae) from the Oligo-Miocene Golden Fleece locality in Tasmania, Australia.

PREMISE OF THE STUDY: The capsular-fruited genus Metrosideros (Myrtaceae) is one of the most widely distributed flowering plant genera in the Pacific but is extinct in Australia today. The center of geographic origin for the genus and the reason for and timing of its extinction in Australia remain uncertain. We identify fossil Metrosideros fruits from the newly discovered Golden Fleece fossil flora in the Oligo-Miocene of Tasmania, Australia, shedding further light on these problems. METHODS: Standard paleopalynological techniques were used to date the fossil-bearing sediments. Scanning electron microscopy and an auto-montage camera system were used to take high-resolution images of fossil and extant fruits taken from herbarium specimens. Fossils are identified using a nearest-living-relative approach. KEY RESULTS: The fossil-bearing sediments are palynostratigraphically dated as being Proteacidites tuberculatus Zone Equivalent (ca. 33-16 Ma) in age and provide a confident Oligo-Miocene age for the macrofossils. Two new fossil species of Metrosideros are described and are here named Metrosideros dawsonii sp. nov. and Metrosideros wrightii sp. nov. CONCLUSIONS: These newly described fossil species of Metrosideros provide a second record of the genus in the Cenozoic of Australia, placing them in the late Early Oligocene to late Early Miocene. It is now apparent not only that Metrosideros was present in Australia, where the genus is now extinct, but that at least several Metrosideros species were present during the Cenozoic. These fossils further strengthen the case for an Australian origin of the genus.

Modular Construction of Fluoroarenes from a New Difluorinated Building Block by Cross-Coupling/Electrocyclisation/Dehydrofluorination Reactions.

Palladium-catalysed coupling reactions based on a novel and easy-to-synthesise difluorinated organotrifluoroborate were used to assemble precursors to 6π-electrocyclisations of three different types. Electrocyclisations took place at temperatures between 90 and 240 °C, depending on the central component of the π-system; nonaromatic trienes were most reactive, but even systems that required the temporary dearomatisation of two arenyl subunits underwent electrocyclisation, albeit at elevated temperatures. Photochemical conditions were effective for these more demanding reactions. The package of methods delivered a structurally diverse set of fluorinated arenes, spanning a 20 kcal mol(-1) range of reactivity, by a flexible route.

Oldest record of Metrosideros (Myrtaceae): Fossil flowers, fruits, and leaves from Australia.

PREMISE OF THE STUDY: Myrtaceous fossil capsular fruits and flowers from the northwest of Tasmania, in the Early Oligocene-aged Little Rapid River (LRR) deposit, are described. The reproductive organs are found in association with Myrtaceous leaves previously thought to belong to a fleshy-fruited genus, Xanthomyrtus at both LRR, and an Eocene Tasmanian site at Hasties, which are reassessed with fresh morphological evidence. METHODS: Standard Light Microscopy (LM) and Scanning Electron Microscopy (SEM) were used to investigate cuticular characters and an auto-montage camera system was used to take high-resolution images of fossil and extant fruits. Fossils are identified using a nearest living relative (NLR) approach. KEY RESULTS: The fossil fruits and flowers share a number of characters with genera of capsular-fruited Myrtaceae, in particular sharing several synapomorphies with species of Metrosideros subg. Metrosideros (tribe: Metrosidereae). The fossil is here described, and named Metrosideros leunigii, sp. nov. CONCLUSIONS: This research establishes the presence of Metrosideros (aff. subg. Metrosideros) in the Eocene-Oligocene (∼40-30 mya) of Tasmania, Australia. This is the first fossil record of Metrosideros in Australia, as well as the oldest conclusive fossil record, and may provide evidence for an Australian origin of the genus. It is also yet another example of extinction in the Tertiary of a group of plants on the Australian mainland that is only found today on nearby Pacific landmasses.

Suzuki-Miyaura coupling reactions of iodo(difluoroenol) derivatives, fluorinated building blocks accessible at near-ambient temperatures.

A recently developed method for the near-ambient generation of difluorovinylzinc reagents has facilitated the preparation of 1-(N,N-diethylcarbamoyloxy)-2,2-difluoro-1-iodoethene and 2,2-difluoro-1-iodo-1-(2'-methoxyethoxymethoxy)ethene. The utility of these reagents has been investigated in Suzuki-Miyaura couplings with a range of potassium trifluoroborate coupling partners, with the scope of successful couplings proving wide. Deiodinated species appeared as significant side products, but a solvent change from i-PrOH to t-BuOH suppressed the pathway to these species and improved coupling yields.

Investigating the host-range of the rust fungus Puccinia psidii sensu lato across tribes of the family Myrtaceae present in Australia.

The exotic rust fungus Puccinia psidii sensu lato was first detected in Australia in April 2010. This study aimed to determine the host-range potential of this accession of the rust by testing its pathogenicity on plants of 122 taxa, representative of the 15 tribes of the subfamily Myrtoideae in the family Myrtaceae. Each taxon was tested in two separate trials (unless indicated otherwise) that comprised up to five replicates per taxon and six replicates of a positive control (Syzygium jambos). No visible symptoms were observed on the following four taxa in either trial: Eucalyptus grandis×camaldulensis, E. moluccana, Lophostemon confertus and Sannantha angusta. Only small chlorotic or necrotic flecks without any uredinia (rust fruiting bodies) were observed on inoculated leaves of seven other taxa (Acca sellowiana, Corymbia calophylla 'Rosea', Lophostemon suaveolens, Psidium cattleyanum, P. guajava 'Hawaiian' and 'Indian', Syzygium unipunctatum). Fully-developed uredinia were observed on all replicates across both trials of 28 taxa from 8 tribes belonging to the following 17 genera: Agonis, Austromyrtus, Beaufortia, Callistemon, Calothamnus, Chamelaucium, Darwinia, Eucalyptus, Gossia, Kunzea, Leptospermum, Melaleuca, Metrosideros, Syzygium, Thryptomene, Tristania, Verticordia. In contrast, the remaining 83 taxa inoculated, including the majority of Corymbia and Eucalyptus species, developed a broad range of symptoms, often across the full spectrum, from fully-developed uredinia to no visible symptoms. These results were encouraging as they indicate that some levels of genetic resistance to the rust possibly exist in these taxa. Overall, our results indicated no apparent association between the presence or absence of disease symptoms and the phylogenetic relatedness of taxa. It is most likely that the majority of the thousands of Myrtaceae species found in Australia have the potential to become infected to some degree by the rust, although this wide host range may not be fully realized in the field.

One-pot near-ambient temperature syntheses of aryl(difluoroenol) derivatives from trifluoroethanol.

Difluoroalkenylzinc reagents prepared from 1-(2'-methoxy-ethoxymethoxy)-2,2,2-trifluoroethane and 1-(N,N-diethylcarbamoyloxy)-2,2,2-trifluoroethane at ice bath temperatures underwent Negishi coupling with a range of aryl halides in a convenient one pot procedure. While significant differences between the enol acetal and carbamate reagents were revealed, the Negishi protocol compared very favourably with alternative coupling procedures in terms of overall yields from trifluoroethanol.

Localised peripheral primitive neuroectodermal tumour (PNET) of the conjunctiva.

A 16-year-old male presented with a 3-month history of an asymptomatic, enlarging conjunctival lesion. An excisional biopsy was performed and histologic and immunohistochemical examination showed characteristic features of a peripheral primitive neuroectodermal tumour (PNET) adjacent to a benign compound naevus. FISH analysis, demonstrating a split-signal at 22q12, confirmed the diagnosis. Staging investigations were negative confirming the primary nature of the lesion. The patient was treated with local wide re-excision and chemotherapy. He remains alive and well 29 months after initial resection.