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1.
PLoS One ; 19(2): e0296846, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38354163

RESUMEN

Food production is at the heart of global sustainability challenges, with unsustainable practices being a major driver of biodiversity loss, emissions and land degradation. The concept of foodscapes, defined as the characteristics of food production along biophysical and socio-economic gradients, could be a way addressing those challenges. By identifying homologues foodscapes classes possible interventions and leverage points for more sustainable agriculture could be identified. Here we provide a globally consistent approximation of the world's foodscape classes. We integrate global data on biophysical and socio-economic factors to identify a minimum set of emergent clusters and evaluate their characteristics, vulnerabilities and risks with regards to global change factors. Overall, we find food production globally to be highly concentrated in a few areas. Worryingly, we find particularly intensively cultivated or irrigated foodscape classes to be under considerable climatic and degradation risks. Our work can serve as baseline for global-scale zoning and gap analyses, while also revealing homologous areas for possible agricultural interventions.


Asunto(s)
Agricultura , Abastecimiento de Alimentos , Alimentos , Biodiversidad , Factores Económicos , Conservación de los Recursos Naturales
2.
Environ Sci Technol ; 57(24): 8975-8982, 2023 06 20.
Artículo en Inglés | MEDLINE | ID: mdl-37272882

RESUMEN

Cetaceans are at elevated risk of accumulating persistent and lipophilic environmental contaminants due to their longevity and high proportion of body fat. Despite this, there is a paucity of taxa-specific chemical effect data, in part due to the ethical and logistical constraints in working with highly mobile aquatic species. Advances in cetacean cell culture have opened the door to the application of mainstream in vitro toxicological effect assessment approaches. Image-based cell profiling is a high-throughput, microscopy-based system commonly applied in drug development. It permits the analysis of the xenobiotic effect on multiple cell organelles simultaneously, hereby flagging its potential utility in the evaluation of chemical toxicodynamics. Here we exposed immortalized humpback whale skin fibroblasts (HuWaTERT) to six priority environmental contaminants known to accumulate in the Southern Ocean food web, in order to explore their subcellular organelle responses. Results revealed chemical-dependent modulation of mitochondrial texture, with the lowest observed effect concentrations for chlorpyrifos, dieldrin, trifluralin, and p,p'-dichlorodiphenyldichloroethane of 0.3, 4.1, 9.3, and 19.8 nM, respectively. By contrast, no significant changes were observed upon exposure to endosulfan and lindane. This study contributes the first fixed mitochondrial images of HuWaTERT and constitutes novel, taxa-specific chemical effect data in support of evidence-based conservation policy and management.


Asunto(s)
Yubarta , Hidrocarburos Clorados , Plaguicidas , Animales , Yubarta/fisiología , Hidrocarburos Clorados/análisis , Hidrocarburos Clorados/metabolismo , Plaguicidas/análisis , Mitocondrias/química , Fibroblastos/química , Fibroblastos/metabolismo
3.
ACS Chem Neurosci ; 13(17): 2565-2578, 2022 09 07.
Artículo en Inglés | MEDLINE | ID: mdl-36018577

RESUMEN

Traditional Chinese medicine (TCM) has been around for thousands of years and is increasingly gaining popularity in the Western world to treat various complex disorders including the incurable neurodegenerative condition, Parkinson's Disease (PD). One of the many directions in recent studies of PD is utilizing the phenotypic assay, or cytological profiling, to evaluate the phenotypic changes of PD-implicated cellular components in patient-derived olfactory neuroepithelial (hONS) cells, upon treating the cells with extracts or pure compounds. To obtain small molecules for studies utilizing PD phenotyping assays, Ligusticum chuanxiong Hort was selected for analysis as it is a popular Chinese herbal medicine used for treating PD-like symptoms. Fifty-three secondary metabolites, including six new compounds, were isolated from the ethanolic extract of L. chuanxiong; their structures were elucidated based on several spectroscopic techniques such as NMR, MS, Fourier transform infrared (FTIR), UV, and theoretical density functional theory (DFT) calculations. Cytological profiling of the afforded natural products against PD hONS cells revealed 34 compounds strongly perturbated the staining of several cellular organelles. In fact, greaterthan 1.5-fold change was observed compared to the control (dimethyl sulfoxide; DMSO), with early endosome, lysosome, and autophagosome (LC3b) being particularly affected. Given these biological compartments are closely related to PD pathogenesis, the results helped rationalize the traditional medicinal use of L. chuanxiong in PD treatment. Further, the hit compounds can serve as chemical probes to map the molecular pathways underlying PD, potentially leading to new therapeutic targets for PD.


Asunto(s)
Medicamentos Herbarios Chinos , Ligusticum , Enfermedad de Parkinson , Medicamentos Herbarios Chinos/farmacología , Medicamentos Herbarios Chinos/uso terapéutico , Humanos , Ligusticum/química , Enfermedad de Parkinson/tratamiento farmacológico
4.
PLoS One ; 17(7): e0271499, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35900966

RESUMEN

The genetic study of multi-incident families is a powerful tool to investigate genetic contributions to the development of Parkinson's disease. In this study, we identified the rare PTPRA p.R223W variant as one of three putative genetic factors potentially contributing to disease in an Australian family with incomplete penetrance. Whole exome sequencing identified these mutations in three affected cousins. The rare PTPRA missense variant was predicted to be damaging and was absent from 3,842 alleles from PD cases. Overexpression of the wild-type RPTPα and R223W mutant in HEK293T cells identified that the R223W mutation did not impair RPTPα expression levels or alter its trafficking to the plasma membrane. The R223W mutation did alter proteolytic processing of RPTPα, resulting in the accumulation of a cleavage product. The mutation also resulted in decreased activation of Src family kinases. The functional consequences of this variant, either alone or in concert with the other identified genetic variants, highlights that even minor changes in normal cellular function may increase the risk of developing PD.


Asunto(s)
Enfermedad de Parkinson , Australia , Predisposición Genética a la Enfermedad , Células HEK293 , Humanos , Mutación , Enfermedad de Parkinson/genética , Proteínas Tirosina Fosfatasas Clase 4 Similares a Receptores/genética , Secuenciación del Exoma
5.
Proteomics Clin Appl ; 16(5): e2200015, 2022 09.
Artículo en Inglés | MEDLINE | ID: mdl-35579911

RESUMEN

PURPOSE: Parkinson's disease (PD) is the second most prevalent neurodegenerative disease. It is generally diagnosed clinically after the irreversible loss of dopaminergic neurons and no general biomarkers currently exist. To gain insight into the underlying cellular causes of PD we aimed to quantify the proteomic differences between healthy control and PD patient cells. EXPERIMENTAL DESIGN: Sequential Window Acquisition of all THeoretical Mass Spectra was performed on primary cells from healthy controls and PD patients. RESULTS: In total, 1948 proteins were quantified and 228 proteins were significantly differentially expressed in PD patient cells. In PD patient cells, we identified seven significantly increased proteins involved in the unfolded protein response (UPR) and focused on cells with high and low amounts of PDIA6 and HYOU1. We discovered that PD patients with high amounts of PDIA6 and HYOU1 proteins were more sensitive to endoplasmic reticulum stress, in particular to tunicamycin. Data is available via ProteomeXchange with identifier PXD030723. CONCLUSIONS AND CLINICAL RELEVANCE: This data from primary patient cells has uncovered a critical role of the UPR in patients with PD and may provide insight to the underlying cellular dysfunctions in these patients.


Asunto(s)
Enfermedades Neurodegenerativas , Enfermedad de Parkinson , Biomarcadores , Humanos , Enfermedad de Parkinson/metabolismo , Proteómica , Tunicamicina/farmacología
6.
Proc Natl Acad Sci U S A ; 118(38)2021 09 21.
Artículo en Inglés | MEDLINE | ID: mdl-34518219

RESUMEN

Triple-negative breast cancer (TNBC) is a breast cancer subtype that lacks targeted treatment options. The activation of the Notch developmental signaling pathway, which is a feature of TNBC, results in the secretion of proinflammatory cytokines and the recruitment of protumoral macrophages to the tumor microenvironment. While the Notch pathway is an obvious therapeutic target, its activity is ubiquitous, and predictably, anti-Notch therapies are burdened with significant on-target side effects. Previously, we discovered that, under conditions of cellular stress commonly found in the tumor microenvironment, the deubiquitinase USP9x forms a multiprotein complex with the pseudokinase tribbles homolog 3 (TRB3) that together activate the Notch pathway. Herein, we provide preclinical studies that support the potential of therapeutic USP9x inhibition to deactivate Notch. Using a murine TNBC model, we show that USP9x knockdown abrogates Notch activation, reducing the production of the proinflammatory cytokines, C-C motif chemokine ligand 2 (CCL2) and interleukin-1 beta (IL-1ß). Concomitant with these molecular changes, a reduction in tumor inflammation, the augmentation of antitumor immune response, and the suppression of tumor growth were observed. The pharmacological inhibition of USP9x using G9, a partially selective, small-molecule USP9x inhibitor, reduced Notch activity, remodeled the tumor immune landscape, and reduced tumor growth without associated toxicity. Proving the role of Notch, the ectopic expression of the activated Notch1 intracellular domain rescued G9-induced effects. This work supports the potential of USP9x inhibition to target Notch in metabolically vulnerable tissues like TNBC, while sparing normal Notch-dependent tissues.


Asunto(s)
Receptores Notch/genética , Transducción de Señal/genética , Neoplasias de la Mama Triple Negativas/genética , Ubiquitina Tiolesterasa/genética , Animales , Línea Celular Tumoral , Proliferación Celular/genética , Citocinas/genética , Regulación Neoplásica de la Expresión Génica/genética , Células HEK293 , Humanos , Interleucina-1beta/genética , Macrófagos/patología , Ratones , Neoplasias de la Mama Triple Negativas/patología , Microambiente Tumoral/genética
7.
Genes (Basel) ; 12(3)2021 03 17.
Artículo en Inglés | MEDLINE | ID: mdl-33802862

RESUMEN

Parkinson's disease (PD) is typically sporadic; however, multi-incident families provide a powerful platform to discover novel genetic forms of disease. Their identification supports deciphering molecular processes leading to disease and may inform of new therapeutic targets. The LRRK2 p.G2019S mutation causes PD in 42.5-68% of carriers by the age of 80 years. We hypothesise similarly intermediately penetrant mutations may present in multi-incident families with a generally strong family history of disease. We have analysed six multiplex families for missense variants using whole exome sequencing to find 32 rare heterozygous mutations shared amongst affected members. Included in these mutations was the KCNJ15 p.R28C variant, identified in five affected members of the same family, two elderly unaffected members of the same family, and two unrelated PD cases. Additionally, the SIPA1L1 p.R236Q variant was identified in three related affected members and an unrelated familial case. While the evidence presented here is not sufficient to assign causality to these rare variants, it does provide novel candidates for hypothesis testing in other modestly sized families with a strong family history. Future analysis will include characterisation of functional consequences and assessment of carriers in other familial cases.


Asunto(s)
Secuenciación del Exoma/métodos , Proteínas Activadoras de GTPasa/genética , Mutación Missense , Enfermedad de Parkinson/genética , Canales de Potasio de Rectificación Interna/genética , Femenino , Predisposición Genética a la Enfermedad , Heterocigoto , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Masculino , Linaje
8.
Nat Food ; 2(2): 97-103, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37117404

RESUMEN

Cover crops are touted for their potential agronomic and environmental benefits, and are currently incentivized through state, federal and private investment in the USA. There is a need to quantify the impact of on-farm use of cover crops at spatial (2-5 years) and temporal (regional-to-national) scales aligned with such investment programmes. Here we report soil health data from a farmer-led trial of cover crops on 1,522 strip-years, from 78 farms across 9 US states over 5 years. We found that up to 5 years of cover crop use had small but increasing impacts on four of six selected soil health indicators, with active carbon concentration responding the most rapidly. Soil texture, the length of time a field was in the trial and a farm-level random effect were also strongly related to soil health properties. Our results fit with evidence from controlled trials and suggest that the use of cover crops can begin to influence soil health within several years after adoption.

9.
Cereb Cortex ; 31(3): 1763-1775, 2021 02 05.
Artículo en Inglés | MEDLINE | ID: mdl-33188399

RESUMEN

Genetic association studies have identified many factors associated with neurodevelopmental disorders such as autism spectrum disorder (ASD). However, the way these genes shape neuroanatomical structure and connectivity is poorly understood. Recent research has focused on proteins that act as points of convergence for multiple factors, as these may provide greater insight into understanding the biology of neurodevelopmental disorders. USP9X, a deubiquitylating enzyme that regulates the stability of many ASD-related proteins, is one such point of convergence. Loss of function variants in human USP9X lead to brain malformations, which manifest as a neurodevelopmental syndrome that frequently includes ASD, but the underlying structural and connectomic abnormalities giving rise to patient symptoms is unknown. Here, we analyzed forebrain-specific Usp9x knockout mice (Usp9x-/y) to address this knowledge gap. Usp9x-/y mice displayed abnormal communication and social interaction behaviors. Moreover, the absence of Usp9x culminated in reductions to the size of multiple brain regions. Diffusion tensor magnetic resonance imaging revealed deficits in all three major forebrain commissures, as well as long-range hypoconnectivity between cortical and subcortical regions. These data identify USP9X as a key regulator of brain formation and function, and provide insights into the neurodevelopmental syndrome arising as a consequence of USP9X mutations in patients.


Asunto(s)
Corteza Cerebral/fisiopatología , Vías Nerviosas/fisiopatología , Neurogénesis/fisiología , Ubiquitina Tiolesterasa/metabolismo , Animales , Conducta Animal , Masculino , Ratones , Ratones Noqueados
10.
Lancet Planet Health ; 5(1): e50-e62, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33306994

RESUMEN

Food system innovations will be instrumental to achieving multiple Sustainable Development Goals (SDGs). However, major innovation breakthroughs can trigger profound and disruptive changes, leading to simultaneous and interlinked reconfigurations of multiple parts of the global food system. The emergence of new technologies or social solutions, therefore, have very different impact profiles, with favourable consequences for some SDGs and unintended adverse side-effects for others. Stand-alone innovations seldom achieve positive outcomes over multiple sustainability dimensions. Instead, they should be embedded as part of systemic changes that facilitate the implementation of the SDGs. Emerging trade-offs need to be intentionally addressed to achieve true sustainability, particularly those involving social aspects like inequality in its many forms, social justice, and strong institutions, which remain challenging. Trade-offs with undesirable consequences are manageable through the development of well planned transition pathways, careful monitoring of key indicators, and through the implementation of transparent science targets at the local level.


Asunto(s)
Industria de Alimentos , Invenciones , Desarrollo Sostenible , Agricultura , Inteligencia Artificial , Femenino , Salud Global , Objetivos , Humanos , Masculino , Innovación Organizacional , Política Pública , Factores Socioeconómicos
11.
NPJ Genom Med ; 5(1): 53, 2020 Dec 09.
Artículo en Inglés | MEDLINE | ID: mdl-33298948

RESUMEN

USP9X is an X-chromosome gene that escapes X-inactivation. Loss or compromised function of USP9X leads to neurodevelopmental disorders in males and females. While males are impacted primarily by hemizygous partial loss-of-function missense variants, in females de novo heterozygous complete loss-of-function mutations predominate, and give rise to the clinically recognisable USP9X-female syndrome. Here we provide evidence of the contribution of USP9X missense and small in-frame deletion variants in USP9X-female syndrome also. We scrutinise the pathogenicity of eleven such variants, ten of which were novel. Combined application of variant prediction algorithms, protein structure modelling, and assessment under clinically relevant guidelines universally support their pathogenicity. The core phenotype of this cohort overlapped with previous descriptions of USP9X-female syndrome, but exposed heightened variability. Aggregate phenotypic information of 35 currently known females with predicted pathogenic variation in USP9X reaffirms the clinically recognisable USP9X-female syndrome, and highlights major differences when compared to USP9X-male associated neurodevelopmental disorders.

12.
Bioorg Med Chem ; 28(21): 115732, 2020 11 01.
Artículo en Inglés | MEDLINE | ID: mdl-33065438

RESUMEN

Cytological profiling (CP) assay against a human olfactory neuroshpere-derived (hONS) cell line using a library of traditional Chinese medicinal plant extracts gave indications that the ethanolic extract of Macleaya cordata (Willd) R. Br. elicited strong perturbations to various cellular components. Further chemical investigation of this extract resulted in the isolation of two new benzo[c]phenanthridine alkaloids, (6R)-10-methoxybocconoline (1) and 6-(1-hydroxyethyl)-10-methoxy-5,6-dihydrochelerythrine (2). Their planar structures were elucidated by extensive 1D and 2D NMR studies, together with MS data. The absolute configuration for position C-6 of 1 and relative configurations for position C-6 and C-1' of 2 were assigned by density functional theory (DFT) calculations of ECD and NMR data, respectively. Also isolated were fourteen known metabolites, including ten alkaloids (3-12) and four coumaroyl-containing compounds (13-16). Cytological profiling of the isolates against Parkinson's Disease (PD) patient-derived olfactory cells revealed bocconoline (3) and 6-(1-hydroxyethyl)-5,6-dihydrochelerythrine (4) significantly perturbated the features of cellular organelles including early endosomes, mitochondria and autophagosomes. Given that hONS cells from PD patients model some functional aspects of the disease, the results suggested that these phenotypic profiles may have a role in the mechanisms underlying PD and signified the efficacy of CP in finding potential chemical tools to study the biological pathways in PD.


Asunto(s)
Papaveraceae/química , Extractos Vegetales/química , Alcaloides/química , Alcaloides/metabolismo , Alcaloides/farmacología , Línea Celular , Dicroismo Circular , Teoría Funcional de la Densidad , Humanos , Lisosomas/efectos de los fármacos , Lisosomas/metabolismo , Espectroscopía de Resonancia Magnética , Microscopía Fluorescente , Mitocondrias/efectos de los fármacos , Mitocondrias/metabolismo , Conformación Molecular , Papaveraceae/metabolismo , Enfermedad de Parkinson/patología , Plantas Medicinales/química , Plantas Medicinales/metabolismo
13.
Nature ; 585(7826): 545-550, 2020 09.
Artículo en Inglés | MEDLINE | ID: mdl-32968258

RESUMEN

To constrain global warming, we must strongly curtail greenhouse gas emissions and capture excess atmospheric carbon dioxide1,2. Regrowing natural forests is a prominent strategy for capturing additional carbon3, but accurate assessments of its potential are limited by uncertainty and variability in carbon accumulation rates2,3. To assess why and where rates differ, here we compile 13,112 georeferenced measurements of carbon accumulation. Climatic factors explain variation in rates better than land-use history, so we combine the field measurements with 66 environmental covariate layers to create a global, one-kilometre-resolution map of potential aboveground carbon accumulation rates for the first 30 years of natural forest regrowth. This map shows over 100-fold variation in rates across the globe, and indicates that default rates from the Intergovernmental Panel on Climate Change (IPCC)4,5 may underestimate aboveground carbon accumulation rates by 32 per cent on average and do not capture eight-fold variation within ecozones. Conversely, we conclude that maximum climate mitigation potential from natural forest regrowth is 11 per cent lower than previously reported3 owing to the use of overly high rates for the location of potential new forest. Although our data compilation includes more studies and sites than previous efforts, our results depend on data availability, which is concentrated in ten countries, and data quality, which varies across studies. However, the plots cover most of the environmental conditions across the areas for which we predicted carbon accumulation rates (except for northern Africa and northeast Asia). We therefore provide a robust and globally consistent tool for assessing natural forest regrowth as a climate mitigation strategy.


Asunto(s)
Secuestro de Carbono , Carbono/metabolismo , Agricultura Forestal/estadística & datos numéricos , Agricultura Forestal/tendencias , Bosques , Mapeo Geográfico , Árboles/crecimiento & desarrollo , Árboles/metabolismo , Conservación de los Recursos Naturales , Recolección de Datos , Restauración y Remediación Ambiental , Calentamiento Global/prevención & control , Internacionalidad , Cinética
14.
Bioscience ; 70(6): 563-575, 2020 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-32665737

RESUMEN

Malnutrition linked to poor quality diets affects at least 2 billion people. Forests, as well as agricultural systems linked to trees, are key sources of dietary diversity in rural settings. In the present article, we develop conceptual links between diet diversity and forested landscape mosaics within the rural tropics. First, we summarize the state of knowledge regarding diets obtained from forests, trees, and agroforests. We then hypothesize how disturbed secondary forests, edge habitats, forest access, and landscape diversity can function in bolstering dietary diversity. Taken together, these ideas help us build a framework illuminating four pathways (direct, agroecological, energy, and market pathways) connecting forested landscapes to diet diversity. Finally, we offer recommendations to fill remaining knowledge gaps related to diet and forest cover monitoring. We argue that better evaluation of the role of land cover complexity will help avoid overly simplistic views of food security and, instead, uncover nutritional synergies with forest conservation and restoration.

15.
Front Neurol ; 11: 331, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32499748

RESUMEN

The study of consanguineous families has provided novel insights into genetic causes of monogenic parkinsonism. Here, we present a family from the rural Khyber Pakhtunkhwa province, Pakistan, where three siblings were diagnosed with early-onset parkinsonism. Homozygosity mapping of two affected siblings and three unaffected family members identified two candidate autozygous loci segregating with disease, 8q24.12-8q24.13 and 9q31.2-q33.1. Whole-exome sequence analysis identified a single rare homozygous missense sequence variant within this region, CCN3 p.D82G. Although unaffected family members were heterozygous for this putative causal mutation, it was absent in 3,222 non-Parkinson's disease (PD) subjects of Pakistani heritage. Screening of 353 Australian PD cases, including 104 early-onset cases and 57 probands from multi-incident families, also did not identify additional carriers. Overexpression of wild-type and the variant CCN3 constructs in HEK293T cells identified an impaired section of the variant protein, alluding to potential mechanisms for disease. Further, qPCR analysis complemented previous microarray data suggesting mRNA expression of CCN3 was downregulated in unrelated sporadic PD cases when compared to unaffected subjects. These data indicate a role for CCN3 in parkinsonism, both in this family as well as sporadic PD cases; however, the specific mechanisms require further investigation. Additionally, further screening of the rural community where the family resided is warranted to assess the local frequency of the variant. Overall, this study highlights the value of investigating underrepresented and isolated affected families for novel putative parkinsonism genes.

16.
J Nat Prod ; 83(5): 1440-1452, 2020 05 22.
Artículo en Inglés | MEDLINE | ID: mdl-32372642

RESUMEN

As part of a continuing research program aiming to identify chemical probes to interrogate Parkinson's disease (PD), we have investigated the Australian plants Gloriosa superba and Alangium villosum. The chemical investigations of G. superba resulted in the isolation of four new alkaloids, ß-lumicolchicosides A-C (1-3) and γ-lumicolchicoside A (4), together with four lumicolchicine derivatives (5-8) and six colchicine analogues (9-14) as known structures. The chemical investigations of A. villosum resulted in the isolation of four new benzoquinolizidine N-oxides, tubulosine Nß5-oxide (15), isotubulosine Nα5-oxide (16), 9-demethyltubulosine Nß5-oxide (17), and 9-demethylisotubulosine Nα5-oxide (18), together with five known benzoquinolizidine alkaloids (19-23). The chemical structures of the new compounds (1-4 and 15-18) were characterized unambiguously by extensive analysis of their NMR and MS data. Unbiased multidimensional profiling was used to investigate the phenotypic profiles of all of the metabolites. The results show that the lead probes have different effects on cellular organelles that are implicated in PD in patient-derived cells.


Asunto(s)
Alangiaceae/química , Alcaloides/química , Alcaloides/farmacología , Antiparkinsonianos/química , Antiparkinsonianos/farmacología , Colchicaceae/química , Australia , Línea Celular , Humanos , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Estructura Molecular , Orgánulos/efectos de los fármacos , Fenotipo , Hojas de la Planta/química
17.
Mol Neurobiol ; 57(5): 2179-2193, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-31974941

RESUMEN

Intellectual disability (ID) and autism spectrum disorder (ASD) are two of the most common neurodevelopmental disorders. Both disorders are extremely heterogenous, and only ~ 40% of reported cases have so far been attributed to genetic mutations. Of the many cellular processes that are affected, the ubiquitin system (UbS) is of particular relevance in that it can rapidly regulate multiple signaling cascades simultaneously. The UbS is a post-translational modification process that revolves around the covalent attachment of a ubiquitin moiety to a substrate, thereby influencing different elements of protein biology, including trafficking, signal transduction, and degradation. Importantly, the UbS has been implicated in regulating multiple pathophysiological pathways related to ASD and ID. This review will discuss how the UbS acts as major signaling hub in the pathogenesis of ASD and ID, raising the prospect of treating broader patient cohorts by targeting the UbS as a common point of convergence of various mutations.


Asunto(s)
Trastorno del Espectro Autista/metabolismo , Discapacidad Intelectual/metabolismo , Procesamiento Proteico-Postraduccional , Ubiquitina/metabolismo , Ubiquitinación/fisiología , Adolescente , Trastorno del Espectro Autista/genética , Trastorno del Espectro Autista/fisiopatología , Niño , Femenino , Humanos , Discapacidad Intelectual/genética , Discapacidad Intelectual/fisiopatología , Masculino , Procesamiento Proteico-Postraduccional/genética , Procesamiento Proteico-Postraduccional/fisiología , Transducción de Señal/genética , Transducción de Señal/fisiología , Serina-Treonina Quinasas TOR/fisiología , Factor de Crecimiento Transformador beta/fisiología , Complejos de Ubiquitina-Proteína Ligasa/metabolismo , Ubiquitinación/genética , Vía de Señalización Wnt
18.
Ecol Appl ; 30(4): e02073, 2020 06.
Artículo en Inglés | MEDLINE | ID: mdl-31965653

RESUMEN

Soil organic matter (SOM) is a key indicator of soil fertility, and building SOM is assumed to decrease reliance on external inputs and ensure stable crop production. Recent syntheses of field data support this assumption with positive SOM-productivity relationships that asymptote at ~4% SOM. Teasing out the directionality of this relationship-the extent to which SOM increases crop growth vs. greater growth leading to higher SOM concentrations-requires controlled experimentation. To disentangle this causative pathway, we conducted a greenhouse experiment whereby we manipulated SOM concentrations from 1% to 9% and evaluated whether the SOM-productivity relationship differed for spring wheat (Triticum aestivum, L.) under nitrogen fertilization crossed with irrigation due to the expectation that SOM buffers the effects of reduced fertilization and/or irrigation. We found that higher concentrations of SOM led to greater productivity (measured as aboveground biomass) up to a threshold of 5% SOM, after which productivity declined across all treatments. These declines occurred despite the fact that indicators of soil health (water-holding capacity, microbial biomass, and bulk density) improved linearly with increasing SOM concentrations. That is, improvements in soil properties did not translate to gains in productivity at the highest SOM levels. Nitrogen fertilization led to greater productivity across all treatments, but to a greater relative extent at lower SOM levels, where we found that productivity on unfertilized soils with 4% SOM matched that of fertilized soils with 2% SOM. Differences in productivity on unfertilized soils due to irrigation emerged at higher SOM levels (>5%), highlighting SOM's role in water retention. Our results demonstrate that building SOM leads to improved growth of a globally important crop; however, our results also indicated a pronounced SOM threshold, after which crop growth declined. This underscores the need to develop optimal SOM targets for desired agricultural and environmental outcomes.


Asunto(s)
Agricultura , Suelo , Biomasa , Carbono , Fertilizantes , Nitrógeno/análisis , Triticum
19.
Neuron ; 105(3): 506-521.e7, 2020 02 05.
Artículo en Inglés | MEDLINE | ID: mdl-31813652

RESUMEN

Variants in the ANK3 gene encoding ankyrin-G are associated with neurodevelopmental disorders, including intellectual disability, autism, schizophrenia, and bipolar disorder. However, no upstream regulators of ankyrin-G at synapses are known. Here, we show that ankyrin-G interacts with Usp9X, a neurodevelopmental-disorder-associated deubiquitinase (DUB). Usp9X phosphorylation enhances their interaction, decreases ankyrin-G polyubiquitination, and stabilizes ankyrin-G to maintain dendritic spine development. In forebrain-specific Usp9X knockout mice (Usp9X-/Y), ankyrin-G as well as multiple ankyrin-repeat domain (ANKRD)-containing proteins are transiently reduced at 2 but recovered at 12 weeks postnatally. However, reduced cortical spine density in knockouts persists into adulthood. Usp9X-/Y mice display increase of ankyrin-G ubiquitination and aggregation and hyperactivity. USP9X mutations in patients with intellectual disability and autism ablate its catalytic activity or ankyrin-G interaction. Our data reveal a DUB-dependent mechanism of ANKRD protein homeostasis, the impairment of which only transiently affects ANKRD protein levels but leads to persistent neuronal, behavioral, and clinical abnormalities.


Asunto(s)
Repetición de Anquirina/fisiología , Espinas Dendríticas/fisiología , Homeostasis/fisiología , Proteostasis/fisiología , Ubiquitina Tiolesterasa/metabolismo , Animales , Células Cultivadas , Células HEK293 , Humanos , Masculino , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Neurogénesis/fisiología , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Ubiquitina Tiolesterasa/química , Ubiquitina Tiolesterasa/genética
20.
Oncol Lett ; 18(3): 3399-3406, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31452820

RESUMEN

Discovering the underlying signalling pathways that control cancer cells is crucial for understanding their biology and to develop therapeutic regimens. Thus, the aim of the present study was to determine the effect of Cripto-1 on pathways controlling glioblastoma (GBM) cell function. To this end, changes in protein phosphorylation in cells overexpressing Cripto-1 were analysed using the Kyoto Encyclopedia of Genes and Genomes pathway analysis tool, as well as the Uniprot resource to identify the functions of Cripto-1-dependent phosphorylated proteins. This revealed that proteins affected by Cripto-1 overexpression are involved in multiple signalling pathways. The mitogen-activated protein kinase (MAPK), focal adhesion (FA) and ErbB pathways were found to be enriched by Cripto-1 overexpression with 35, 27 and 24% of pathway proteins phosphorylated, respectively. These pathways control important cellular processes in cancer cells that correlate with the observed functional changes described in earlier studies. More specifically, Cripto-1 may regulate MAPK cellular proliferation and survival pathways by activating epithelial growth factor receptor (EGFR; Ser1070) or fibroblast GFR1 (Tyr654). Its effect on cellular proliferation and survival could be mediated through Src (Tyr418), FA kinase (FAK; Tyr396), p130CAS (Tyr410), c-Jun (Ser63), Paxillin (PXN; Tyr118) and BCL2 (Thr69) of the FA pathway. Cripto-1 may also control cellular motility and invasion by activating Src (Tyr418), FAK (Tyr396) and PXN (Tyr118) of the FA pathway. However, Cripto-1 regulation of cellular invasion and migration might be not limited to the FA pathway, it may also control these cellular mechanisms through signalling via EGFR (Ser1070)/Her2 (Tyr877) to mediate the Src (Tyr418) and FAK (Tyr396) cascade activation of the ErbB signalling pathway. Angiogenesis could be mediated by Cripto-1 by activating c-Jun (Ser63) through EGFR (Ser1070)/Her2 (Tyr877) of the ErbB pathway. To conclude, the present study has augmented and enriched our current knowledge on the crucial roles that Cripto-1 may play in controlling different cellular mechanisms in GBM cells.

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