Superpixel segmentation integrated feature subset selection for wetland classification over Yellow River Delta.

Wetlands are one of the world's most significant and vulnerable ecosystems. The wetlands of the Yellow River Delta are subject to multiple influences of ocean tidal action and the massive sediment deposits of the Yellow River, resulting in a more complex and unstable composition of land cover types. To better distinguish the wetlands in the region, we conducted the classification using an object-oriented combined with feature preference machine learning approach. To alleviate the pretzel phenomenon in pixel-based classification, a superpixel segmentation method using the watershed algorithm with H-minima labeling was used to segment the images at the optimal scale. The best feature subset for classification was filtered using the recursive feature elimination cross-validation approach, which extracts multiple spectral indices from the images. A random forest classifier combining superpixel segmentation and feature selection methods was proposed for the wetland classification. The model improves the classification accuracy of wetlands compared to three classical pixel-based machine learning classification methods. And the overall accuracy was 91.74% and the kappa coefficient was 0.9078, both of which were improved by about 4.53% and 0.0506, respectively, compared with the best-performing random forest classifier in pixel-oriented. The results showed that this method can effectively improve the classification accuracy of the Yellow River Delta wetlands compared with the previous studies.

Food waste hydrolysate as a carbon source to improve nitrogen removal performance of high ammonium and high salt wastewater in a sequencing batch reactor.

The high ammonium and high salt (HAHS) wastewater generated from the anaerobic digestate of food waste is usually difficult to be treated by biological process because of its low C/N ratio. Herein, food waste hydrolysate (FWH) is rich in readily biodegradable organic matter, was utilized as carbon source to enhance the nitrogen removal of HAHS in the activated-sludge system. Results showed that compared with the control average total nitrogen removal efficiency increased from 73.4% to 94.9% and effluent declined from 281.4 mg/L to 53.9 mg/L by adding FWH at the C/N ratio of 6, satisfying the sewage discharge standard regulated by China. Besides, FWH utilization led to higher selectivity of the species responsible for nitrogen removal in related to glucose-adding group, which were dominated by Flavobacteriaceae, Melioribacteraceae, PHOS-HE36, and Rhodobacteraceae after a long-term operation. In general, FWH is an alternative carbon source to enhance nitrogen removal in HAHS wastewater treatment.

Potential roles for pattern molecule of PAMP-triggered immunity in improving crop cold tolerance.

KEY MESSAGE: The application of flagellin 22 (flg22), the most widely studied PAMP, enhance crop cold tolerance. ICE1-CBF pathway and SA signaling is involved in the alleviation of cold injury by flg22 treatment. Pathogen infection cross-activates cold response and increase cold tolerance of host plants. However, it is not possible to use the infection to increase cold tolerance of field plants. Here flagellin 22 (flg22), the most widely studied PAMP (pathogen-associated molecular patterns), was used to mimic the pathogen infection to cross-activate cold response. Flg22 treatment alleviated the injury caused by freezing in Arabidopsis, oilseed and tobacco. In Arabidopsis, flg22 activated the expression of immunity and cold-related genes. Moreover, the flg22 induced alleviation of cold injury was lost in NahG transgenic line (SA-deficient), sid2-2 and npr1-1 mutant plants, and flg22-induced expression of cold tolerance-related genes, which indicating that salicylic acid signaling pathway is required for the alleviation of cold injury by flg22 treatment. In short flg22 application can be used to enhance cold tolerance in field via a salicylic acid-depended pathway.

Mapping knowledge landscapes and emerging trends of sonodynamic therapy: A bibliometric and visualized study.

Background: Ultrasound-triggered sonodynamic therapy (SDT), as a non-invasive approach, has attracted considerable attention in a wide variety of malignant tumors and other diseases. Over the past 2 decades, the number of scientific publications on SDT has increased rapidly. However, there is still a lack of one comprehensive report that summarizes the global research trends and knowledge landscapes in the field of SDT in detail. Thus, we performed a bibliometric analysis on SDT from 2000 to 2021 to track the current hotspots and highlight future directions. Methods: We collected publications on SDT research from the Web of Science Core Collection database. The annual number of publications and citations, major contributors, popular journals, international collaborations, co-cited references and co-occurrence keywords were analyzed and visualized with CiteSpace, VOSviewer, and R-bibliometrix. Results: A total of 701 publications were included. The annual publication output increased from 5 in 2000 to 175 in 2021, and the average growth rate was 18.4%. China was the most productive country with 463 documents (66.05%), and Harbin Medical University was the most prolific institution (N = 73). Ultrasound in Medicine and Biology published the most papers related to SDT. Materials Science, and Chemistry were the research areas receiving the most interest. All the keywords were divided into four different clusters including studies on mechanisms, studies on drug delivery and nanoparticles, studies on cancer therapy, as well as studies on ultrasound and sonosensitizers. In addition to nanomaterials-related studies including nanoparticles, mesoporous silica nanoparticles, nanosheets, liposomes, microbubble and TiO2 nanoparticle, the following research directions such as immunogenic cell death, metal-organic framework, photothermal therapy, hypoxia, tumor microenvironment, chemodynamic therapy, combination therapy, tumor resistance, intensity focused ultrasound, drug delivery, and Staphylococcus aureus also deserve further attention and may continue to explode in the future. Conclusion: SDT has a bright future in the field of cancer treatment, and nanomaterials have increasingly influenced the SDT field with the development of nano-technology. Overall, this comprehensive bibliometric study was the first attempt to analyze the field of SDT, which could provide valuable references for later researchers to better understand the global research trends, hotspots and frontiers in this domain.

HISTONE DEACETYLASE 6 suppresses salicylic acid biosynthesis to repress autoimmunity.

Salicylic acid (SA) plays an important role for plant immunity, especially resistance against biotrophic pathogens. SA quickly accumulates after pathogen attack to activate downstream immunity events and is normally associated with a tradeoff in plant growth. Therefore, the SA level in plants has to be strictly controlled when pathogens are absent, but how this occurs is not well understood. Previously we found that in Arabidopsis (Arabidopsis thaliana), HISTONE DEACETYLASE 6 (HDA6), a negative regulator of gene expression, plays an essential role in plant immunity since its mutation allele shining 5 (shi5) exhibits autoimmune phenotypes. Here we report that this role is mainly through suppression of SA biosynthesis: first, the autoimmune phenotypes and higher resistance to Pst DC3000 of shi5 mutants depended on SA; second, SA significantly accumulated in shi5 mutants; third, HDA6 repressed SA biosynthesis by directly controlling the expression of CALMODULIN BINDING PROTEIN 60g (CBP60g) and SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1). HDA6 bound to the chromatin of CBP60g and SARD1 promoter regions, and histone H3 acetylation was highly enriched within these regions. Furthermore, the transcriptome of shi5 mutants mimicked that of plants treated with exogenous SA or attacked by pathogens. All these data suggest that HDA6 is vital for plants in finely controlling the SA level to regulate plant immunity.

Improving solid-liquid separation performance of anaerobic digestate from food waste by thermally activated persulfate oxidation.

Anaerobic digestion is a promising ecofriendly technology for the management of the continuous increasing food waste (FW). However, the large amount of resulting anaerobic digestate are very difficult to be purified due to high concentration of suspended colloids. Solid-liquid separation is a pivotal step for the subsequent biological treatment of the digestate by activated sludge process. The dewaterability of digestate could directly reflect the solid-liquid separation performance. In this study, a thermally-activated persulfate (PDS) conditioning method was utilized to enhance the digestate dewaterability. Results revealed that PDS thermally conditioning significantly improved the dewaterability by decreasing digestate pH and decomposing organic substances in digestate. The decline of pH, which was resulted from PDS thermally activation reaction, facilitated filterability improvement via reducing the surface negative charges and prompting the oxidizing ability of PDS-relevant radicals. Protein, the main organic component in digestate, was most closely correlated with digestate dewaterability. Fortunately, they were also the most vulnerable constituent under the oxidation attack. PDS thermal conditioning at 80°C was proven to be the most suitable for improving the solid-liquid separation performance of anaerobic. For practical application in conditioning the anaerobic digestate from FW, the conditions should be further optimized according to the digestate characteristic.

Pst DC3000 infection alleviates subsequent freezing and heat injury to host plants via a salicylic acid-dependent pathway in Arabidopsis.

Abiotic stresses greatly affect the immunity of plants. However, it is unknown whether pathogen infection affects abiotic stress tolerance of host plants. Here, the effect of defense response on cold and heat tolerance of host plants was investigated in Pst DC3000-infected Arabidopsis plants, and it was found that the pathogen-induced defense response could alleviate the injury caused by subsequent cold and heat stress (38°C). Transcriptomic sequencing plus RT-qPCR analyses showed that some abiotic stress genes are up-regulated in transcription by pathogen infection, including cold signaling components ICE1, CBF1, and CBF3, and some heat signaling components HSFs and HSPs. Moreover, the pathogen-induced alleviation of cold and heat injury was lost in NahG transgenic line (SA-deficient), sid2-2 and npr1-1 mutant plants, and pathogen-induced expression of cold and heat tolerance-related genes such as CBFs and HSPs, respectively, was lost or compromised in these plants, indicating that salicylic acid signaling pathway is required for the alleviation of cold and heat injury by pathogen infection. In short, our current work showed that in fighting against pathogens, host plants also enhance their cold and heat tolerance via a salicylic acid-dependent pathway.

Cold stress activates disease resistance in Arabidopsis thaliana through a salicylic acid dependent pathway.

Exposure to short-term cold stress influences disease resistance by mechanisms that remain poorly characterized. The molecular basis of cold-activated immunity was therefore investigated in Arabidopsis thaliana inoculated with the bacterial pathogen Pst DC3000, using a transcriptomic analysis. Exposure to cold stress for 10 hr was sufficient to activate immunity, as well as H2 O2 accumulation and callose deposition. Transcriptome changes induced by the 10-hr cold treatment were similar to those caused by pathogen infection, including increased expression of the salicylic acid (SA) pathway marker genes, PR2 and PR5, and genes playing positive roles in defence against (hemi)-biotrophs. In contrast, transcripts encoding jasmonic acid (JA) pathway markers such as PR4 and MYC2 and transcripts with positive roles in defence against necrotrophs were less abundant following the 10-hr cold treatment. Cold-activated immunity was dependent on SA, being partially dependent on NPR1 and ICS1/SID2. In addition, transcripts encoding SA biosynthesis enzymes such as ICS2, PAL1, PAL2, and PAL4 (but not ICS1/SID2) and MES9 were more abundant, whereas GH3.5/WES1 and SOT12 transcripts that encode components involved in SA modification were less abundant following cold stress treatment. These findings show that cold stress cross-activates innate immune responses via a SA-dependent pathway.

High glucose contributes to the proliferation and migration of non-small cell lung cancer cells via GAS5-TRIB3 axis.

Despite the growing number of studies exhibited an association of diabetes mellitus (DM) and lung cancer progression, the concrete mechanism of DM aggravating lung cancer has not been elucidated. This study was to investigate whether and how high glucose (HG) contribute to the proliferation and migration of non-small cell lung cancer (NSCLC) cells in vitro. In the present study, we confirmed that HG promoted the proliferation and migration of NSCLC cells, and also induced an anti-apoptosis effect on NSCLC cells. Moreover, HG inhibited the expression of GAS5 in NSCLC cells but elevated the protein level of TRIB3. GAS5 overexpression promoted the degradation of TRIB3 protein by ubiquitination and inhibited the HG induced-proliferation, anti-apoptosis and migration of NSCLC cells. Importantly, TRIB3 overexpression reversed the effects of GAS5 on the HG-treated NSCLC cells. Taken together, down-regulated GAS5 by HG significantly enhanced the proliferation, anti-apoptosis and migration in NSCLC cells through TRIB3, thus promoting the carcinogenesis of NSCLC.

HISTONE DEACETYLASE 6 represses pathogen defence responses in Arabidopsis thaliana.

Plant defence mechanisms are suppressed in the absence of pathogen attack to prevent wasted energy and growth inhibition. However, how defence responses are repressed is not well understood. Histone deacetylase 6 (HDA6) is a negative regulator of gene expression, and its role in pathogen defence response in plants is not known. In this study, a novel allele of hda6 (designated as shi5) with spontaneous defence response was isolated from a forward genetics screening in Arabidopsis. The shi5 mutant exhibited increased resistance to hemibiotrophic bacterial pathogen Pst DC3000, constitutively activated expression of pathogen-responsive genes including PR1, PR2, etc. and increased histone acetylation levels at the promoters of most tested genes that were upregulated in shi5. In both wild type and shi5 plants, the expression and histone acetylation of these genes were upregulated by pathogen infection. HDA6 was found to bind to the promoters of these genes under both normal growth conditions and pathogen infection. Our research suggests that HDA6 is a general repressor of pathogen defence response and plays important roles in inhibiting and modulating the expression of pathogen-responsive genes in Arabidopsis.

Expression and significance of Rac1, Pak1 and Rock1 in gastric carcinoma.

AIMS: Rac1, Pak1 and Rock1 are indicators related to gastric cancer invasion and metastasis, but few reports discuss all three kinds of protein in research on gastric cancer invasion and metastasis. The aim of this study was to investigate the expression and clinical significance of Rac1, Pak1 and Rock1 in gastric carcinoma. METHODS: Rac1, Pak1 and Rock1 expression in 158 cases of gastric carcinoma were investigated via immunohistochemical staining and clinical analysis. RESULTS: The positive expression rates of Rac1, Pak1 and Rock1 in normal tissue, intraepithelial neoplastic tissues and gastric carcinoma showed an increasing trend (P < 0.05). Their expression in lymph node metastasis was significantly higher than in patients with lymph-node metastasis than in those without lymph nodes metastasis (P < 0.05). Their expression in tumor (TNM stages III and IV) were significantly higher than that in stages I and II (P < 0.05). Rac1, Pak1 and Rock1 expression did not differ significantly with patients' sex (P > 0.05). CONCLUSION: Positive rates of Rac1, Pak1 and Rock1 expression in normal tissue, dysplasia and gastric carcinoma show an increasing trend and are correlated with tumor lymph node metastasis and TNM stage. Rac1, Pak1 and Rock1 may be important biomarkers of gastric carcinoma invasion and metastasis.

Preparation of scratch and aging resistant nanocomposite coating on PVC substrate.

A nanocomposite coating was prepared on the surface of PVC (Poly Vinyl Chloride) substrate using spinning technique with attempt of incorporating alpha-FeOOH nanoneedles into the organic-inorganic hybrid matrices. The hybrid matrices were derived from tetraethoxysilane (TEOS) and 3-glycidoxypropyltrimethoxysilane (GLYMO) with a process of hydrolysis and condensation. It was found that the colorless and transparent nanocomposite coating endowed PVC substrate outstanding scratch and aging resistance.