Illumina-based transcriptomic analysis on recalcitrant seeds of Panax notoginseng for the dormancy release during the after-ripening process.

Panax notoginseng (Burk) F.H. Chen is an economically and medicinally important plant of the family Araliacease, with seed dormancy being a key factor limiting the extended cultivation of P. notoginseng. The seeds belong to the morphophysiological dormancy (MPD) group, and it has also been described as the recalcitrant seed. To date, the molecular mechanism of dormancy release in the recalcitrant seed of P. notoginseng is unknown. In the present study, the transcript profiles of seeds from different after-ripening stages (0, 20, 40 and 60 days) were investigated using Illumina Hiseq 2500 technology. 91 979 946 clean reads were generated, and 81 575 unigenes were annotated in at least one database. In addition, the differentially expressed genes (DEGs) were identified by the pairwise comparisons. We screened out 2483 DEGs by the three key groups of 20 days vs 0 d, 40 d vs 0 d and 60 d vs 0 d. The DEGs were analyzed by gene ontology enrichment and Kyoto Encyclopedia of Genes and Genomes pathway annotation. Meanwhile, we obtained 78 DEGs related to seeds dormancy release at different after-ripening stages of P. notoginseng, of which 15 DEGs were associated with abscisic acid and gibberellin. 26 DEGs that encode late embryogenesis abundant protein and antioxidant enzyme were correlated with desiccation tolerance in seeds. In summary, the results obtained here showed that PECTINESTERASE-2-LIKE, GA-INSENSITIVE, ENT-KAURENE SYNTHASE, PROTEIN PHOSPHATASE 2C, GIBBERELLIN 2-BETA-DIOXYGENASE, SUPEROXIDE DISMUTASE, L-ASCORBATE PEROXIDASE, CATALASE, LATE EMBRYOGENESIS ABUNDANT PROTEIN DC3 and DEHYDRIN 9 were potentially involved in dormancy release and desiccation sensitivity of P. notoginseng seeds. The data might provide a basis for researches on MPD.

[Characteristics of photosynthesis and light energy partitioning in Amorphophallus xiei grown along a light-intensity gradient.] / ä¸åŒå ‰ç §å¼ºåº¦ä¸‹è°¢å›é­”èŠ‹çš„å ‰åˆä½œç”¨åŠèƒ½é‡åˆ†é ç‰¹å¾.

The objective of the present study was to examine the adaptation strategy of Amorphophallus xiei, a shade-demanding species, grown under different levels of light intensity. The responses of leaf to photosynthetic active radiation, CO2 and simulated sunflecks were analyzed in A. xiei grown under 100% (high light), 32.6% (moderate light) and 5.98% (low light) of full sun. Meanwhile, chlorophyll a fluorescence parameter and light energy partitioning were also recorded and calculated in the above-mentioned responsive process. The results showed that in most cases, the maximum photosynthetic rate (Pmax), dark respiration rate, apparent quantum yield and carboxylation efficiency in A. xiei significantly decreased with increasing the light level, however, the light compensation point, CO2 compensation point significantly increased. The photosynthetic induction was quicker in individuals grown under moderate light (P<0.05), and the initial stomatal conductance (gs-i) during dark adaptation increased significantly with increasing the light level. There was a ne-gative correlation between gs-i and the time required to reach 30%, 50% and 90% of Pmax during the process of photosynthetic induction. Moreover, the values of actual photochemical efficiency of PS2 (ΔF/Fm') in the light, phototochemical quenching of chlorophyll fluorescence (qP) and photosynthetic electron transport rate (ETR) were higher and non-photochemical quenching (NPQ) recorded in photosynthetic induction was also higher in individuals grown under high light, nevertheless, the maximum photochemical efficiency of PS2 in the light (Fv'/Fm') was higher in individuals grown under low light. The proportion of light energy allocated to non-photochemical quenching (ФNPQ) was lower in individuals grown under high light, and, correspondingly, it was higher in ones grown under low light. The results obtained here suggested that, when exposed to high light stress, moderate- and low-light-grown A. xiei would activate the mechanism of energy dissipation to protect itself from injury. Correspondingly, high-light-grown individuals would employ the strategy of increasing heat dissipation and forming quenching complex to cope with high light stress, which, however, might be one of reasons for the sensitivity of A. xiei to high light environment.