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1.
Front Plant Sci ; 15: 1356224, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38469331

RESUMEN

Introduction: The incorporation of green manures substantially enhances the conversion of external phosphorus (P) fertilizers and soil-reserved P into forms readily available to plants. The study aims to evaluate the influence of green manure additions on soil phosphorus dynamics and citrus growth, considering different green manure species and initial soil phosphorus levels. Additionally, the research seeks to elucidate the microbiological mechanisms underlying the observed effects. Methods: A citrus pot experiment was conducted under both P-surplus (1.50 g·P·kg-1) and P-deficient (0.17 g·P·kg-1) soils with incorporating legume (Leg), non-legume (Non-Leg) or no green manure residues (CK), and 18O-P labeled KH2PO4 (0.5 g, containing 80‰ δ18Op) was additionally introduced to trace the turnover characteristics of chemical P fertilizer mediated by soil microorganisms. Results and discussion: In P-surplus soil, compared with the CK treatment, the Leg treatment significantly increased soil H2O-Pi (13.6%), NaHCO3-Po (8.9%), NaOH-Pi (9.5%) and NaOH-Po (30.0%) content. It also promoted rapid turnover of P sources into H2O-Pi and NaHCO3-Pi pools by enhancing the phoC (576.6%) gene abundance. In contrast, the Non-Leg treatment significantly augmented soil H2O-Pi (9.2%) and NaHCO3-Po (8.5%) content, facilitating the turnover of P sources into NaHCO3-Pi pools. Under P-deficient soil conditions, compared with the CK treatment, the Leg treatment notably raised soil H2O-Pi (150.0%), NaHCO3-Pi (66.3%), NaHCO3-Po (34.8%) and NaOH-Pi (59.0%) content, contributing to the transfer of P sources into NaHCO3-Pi and NaOH-Pi pools. This effect was achieved through elevated ALP (33.8%) and ACP (12.9%) activities and increased pqqC (48.1%), phoC (42.9%), phoD (21.7%), and bpp (27.4%) gene abundances. The Non-Leg treatment, on the other hand, led to significant increases in soil NaHCO3-Pi (299.0%) and NaHCO3-Po (132.6%) content, thereby facilitating the turnover of P sources into NaHCO3-Pi and NaOH-Pi pools, except for the phoC gene abundance. Both Leg and Non-Leg treatments significantly improved citrus growth (7.3-20.0%) and P uptake (15.4-42.1%) in P-deficient soil but yielded no substantial effects in P-surplus soil. In summary, introducing green manure crops, particularly legume green manure, emerges as a valuable approach to enhance soil P availability and foster fruit tree growth in orchard production.

2.
Heliyon ; 10(4): e25736, 2024 Feb 29.
Artículo en Inglés | MEDLINE | ID: mdl-38370226

RESUMEN

Excessive cavity pressure may result in a sand casting explosion, and corresponding measures should be adopted to prevent these consequences. In this study, the pressure variations in the cavity were first investigated based upon on-site testing by taking the resin contents into consideration, and then the evolution characteristics of sand casting explosion accidents were analyzed in depth by system dynamics, chaos theory, and the bow-tie model. When the resin contents are 1.3 wt%, 1.4 wt%, and 1.5 wt%, the pressures of the gas vent increase by 27.0 Pa, 32.8 Pa, and 35.6 Pa, respectively. To reduce the pressure of the cavity, the resin content should be reduced. The evolutionary process of sand casting explosion accidents has a noticeable butterfly effect and randomness, whose occurrence is comprehensively affected by human, object, environment, management and emergency subsystems. The leading causes of sand casting explosion accidents mainly include the extensive gas evolution characteristics of foundry sand, cavity exhaust blockage, and inadequate safety monitoring. The leading consequences of sand casting explosion accidents mainly include casualties, secondary disasters, and social panic. The implications of these findings concerning sand casting explosion accidents can be regarded as the foundation for accident prevention in practice.

3.
Behav Sci (Basel) ; 12(6)2022 Jun 02.
Artículo en Inglés | MEDLINE | ID: mdl-35735386

RESUMEN

This study focused on the extreme heavy rainstorm that occurred in Zhengzhou in July 2021; approximately 380 people were killed or missing as a result of this storm. To investigate the evolution behaviors of this rainstorm and take corresponding prevention measures, several methods and models were adopted, including cloud modeling, preliminary hazard analysis (PHA), fault tree analysis (FTA), bow-tie modeling, and chaos theory. The main reasons for this rainstorm can be divided into the following three aspects: force majeure, such as terrain and extreme weather conditions, issues with city construction, and insufficient emergency rescue. The secondary disasters caused by this rainstorm mainly include urban water logging, river flooding, and mountain torrents and landslides. The main causes of the subway line-5 accident that occurred can be described as follows: the location of the stabling yard was low, the relevant rules and regulations of the subway were not ideal, insufficient attention was given to the early warning information, and the emergency response mechanism was not ideal. Rainstorms result from the cross-coupling of faults in humans, objects, the environment, and management subsystems, and the evolution process shows an obvious butterfly effect. To prevent disasters caused by rainstorms, the following suggestions should be adopted: vigorously improve the risk awareness and emergency response capabilities of leading cadres, improve the overall level of urban disaster prevention and mitigation, reinforce the existing reservoirs in the city, strengthen the construction of sponge cities, and improve the capacity of urban disaster emergency rescue.

4.
Sci Data ; 9(1): 121, 2022 03 30.
Artículo en Inglés | MEDLINE | ID: mdl-35354824

RESUMEN

The outbreak of Coronavirus Disease 2019 (COVID-19) at the end of 2019 turned into a global pandemic. To help analyze the spread and evolution of the virus, we collated and analyzed data related to the viral genome, sequence variations, and locations in temporal and spatial distribution from GISAID. Information from the Wikipedia web page and published research papers were categorized and mined to extract epidemiological data, which was then integrated with the public dataset. Genomic and epidemiological data were matched with public information, and the data quality was verified by manual curation. Finally, an online database centered on virus genomic information and epidemiological data can be freely accessible at https://www.biosino.org/kgcov/ , which is helpful to identify relevant knowledge and devising epidemic prevention and control policies in collaboration with disease control personnel.


Asunto(s)
COVID-19 , COVID-19/epidemiología , COVID-19/genética , Brotes de Enfermedades , Genómica , Humanos , Pandemias , SARS-CoV-2
5.
Sensors (Basel) ; 21(21)2021 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-34770546

RESUMEN

BACKGROUND: Although hydraulic support can help enterprises in their production activities, it can also cause fatal accidents. METHODS: This study established a composite risk-assessment method for hydraulic support failure in the mining industry. The key basic event of hydraulic support failure was identified based on fault tree analysis and gray relational analysis, and the evolution mechanism of hydraulic support failure was investigated based on chaos theory, a synthetic theory model, and cause-and-effect-layer-of-protection analysis (LOPA). RESULTS: After the basic events of hydraulic support failure are identified based on fault tree analysis, structure importance (SI), probability importance (PI), critical importance (CI), and Fussell-Vesely importance (FVI) can be calculated. In this study, we proposed the Fussell-Vesely-Xu importance (FVXI) to reflect the comprehensive impact of basic event occurrence and nonoccurrence on the occurrence probability of the top event. Gray relational analysis was introduced to determine the integrated importance (II) of basic events and identify the key basic events. According to chaos theory, hydraulic support failure is the result of cross-coupling and infinite amplification of faults in the employee, object, environment, and management subsystems, and the evolutionary process has an obvious butterfly effect and inherent randomness. With the help of the synthetic theory model, we investigated the social and organizational factors that may lead to hydraulic support failure. The key basic event, jack leakage, was analyzed in depth based on cause-and-effect-LOPA, and corresponding independent protection layers (IPLs) were identified to prevent jack leakage. IMPLICATIONS: The implications of these findings with respect to hydraulic support failure can be regarded as the foundation for accident prevention in practice.


Asunto(s)
Salud Laboral , Accidentes , Probabilidad , Medición de Riesgo
6.
Artículo en Inglés | MEDLINE | ID: mdl-33672141

RESUMEN

Background: Construction activities not only provide the necessary conditions for citizens to live, but also cause fatal accidents. Methods: This study aimed to reveal the characteristics of fatal accidents in the construction industry in China based on statistical data. From 2010 to 2019, there were 6005 fatal accidents in China's construction industry causing 7275 deaths. The important features of these fatal accidents, such as the type, time of occurrence, site location, severity, and geographical region of the accident, were carefully analyzed. Results: There were 258 major and severe construction accidents causing 1037 deaths, accounting for 4.3% and 14.25% of the total number of construction accidents and deaths in this period, respectively. As an important finding, more deaths occurred in August and on Mondays. The greatest number of construction accidents took place along openings and edges, accounting for 22.9% of all fatal accidents. Taking into account their economic development level and number of employees, Qinghai and Hainan experienced a higher mortality rate than Jiangsu. Falls from a high place were the dominant type of construction accident, accounting for 51.66% of all accidents. However, collapses were the primary type of major and severe construction accident, accounting for 60.09% of such accidents. The predicted number of construction deaths in 2020 is 887 according to the GM(1,1) model. Corresponding safety measures should be adopted to improve the working environment of the construction industry. Implications: The implications of these results with respect to the characteristics of construction accidents can be regarded as the foundation for accident prevention in practice.


Asunto(s)
Industria de la Construcción , Prevención de Accidentes , Accidentes , Accidentes de Trabajo , China/epidemiología , Lugar de Trabajo
7.
Database (Oxford) ; 20202020 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-32542364

RESUMEN

Glycosyltransferases (GTs), a large class of carbohydrate-active enzymes, adds glycosyl moieties to various substrates to generate multiple bioactive compounds, including natural products with pharmaceutical or agrochemical values. Here, we first collected comprehensive information on GTs, including amino acid sequences, coding region sequences, available tertiary structures, protein classification families, catalytic reactions and metabolic pathways. Then, we developed sequence search and molecular docking processes for GTs, resulting in a GTs database (GTDB). In the present study, 520 179 GTs from approximately 21 647 species that involved in 394 kinds of different reactions were deposited in GTDB. GTDB has the following useful features: (i) text search is provided for retrieving the complete details of a query by combining multiple identifiers and data sources; (ii) a convenient browser allows users to browse data by different classifications and download data in batches; (iii) BLAST is offered for searching against pre-defined sequences, which can facilitate the annotation of the biological functions of query GTs; and lastly, (iv) GTdock using AutoDock Vina performs docking simulations of several GTs with the same single acceptor and displays the results based on 3Dmol.js allowing easy view of models.


Asunto(s)
Bases de Datos de Proteínas , Glicosiltransferasas , Secuencia de Aminoácidos , Ontología de Genes , Simulación del Acoplamiento Molecular , Anotación de Secuencia Molecular , Programas Informáticos , Interfaz Usuario-Computador
8.
Artículo en Inglés | MEDLINE | ID: mdl-32471060

RESUMEN

The metallurgical industry is a significant component of the national economy. The main purpose of this study was to establish a composite risk analysis method for fatal accidents in the metallurgical industry. We collected 152 fatal accidents in the Chinese metallurgical industry from 2001 to 2018, including 141 major accidents, 10 severe accidents, and 1 extraordinarily severe accident, together resulting in 731 deaths. Different from traffic or chemical industry accidents, most of the accidents in the metallurgical industry are poisoning and asphyxiation accidents, which account for 40% of the total number of fatal accidents. As the original statistical data of fatal accidents in the metallurgical industry have irregular fluctuations, the traditional prediction methods, such as linear or quadratic regression models, cannot be used to predict their future characteristics. To overcome this issue, the grey interval predicting method and the GM(1,1) model of grey system theory are introduced to predict the future characteristics of fatal accidents in the metallurgical industry. Different from a fault tree analysis or event tree analysis, the bow tie model integrates the basic causes, possible consequences, and corresponding safety measures of an accident in a transparent diagram. In this study, the bow tie model was used to identify the causes and consequences of fatal accidents in the metallurgical industry; then, corresponding safety measures were adopted to reduce the risk.


Asunto(s)
Accidentes de Trabajo , Liberación de Peligros Químicos , Metalurgia , Accidentes de Trabajo/mortalidad , China , Humanos
9.
Artículo en Inglés | MEDLINE | ID: mdl-32276454

RESUMEN

Safety assessment of a casting workshop will provide a clearer understanding of the important safety level required for a foundry. The main purpose of this study was to construct a composite safety assessment method to protect employee health using the cloud model and cause and effect-Layer of Protection Analysis (LOPA). In this study, the weights of evaluation indicators were determined using the subjective analytic hierarchy process and objective entropy weight method respectively. Then, to obtain the preference coefficient of the integrated weight more precisely, a new algorithm was proposed based on the least square method. Next, the safety level of the casting workshop was presented based on the qualitative and quantitative analysis of the cloud model, which realized the uncertainty conversion between qualitative concepts and their corresponding quantitative values, as well as taking the fuzziness and randomness into account; the validity of cloud model evaluation was validated by grey relational analysis. In addition, cause and effect was used to proactively identify factors that may lead to accidents. LOPA was used to correlate corresponding safety measures to the identified risk factors. 6 causes and 19 sub-causes that may contribute to accidents were identified, and 18 potential remedies, or independent protection layers (IPLs), were described as ways to protect employee health in foundry operations. A mechanical manufacturing business in Hunan, China was considered as a case study to demonstrate the applicability and benefits of the proposed safety assessment approach.


Asunto(s)
Salud Laboral , Algoritmos , China , Modelos Teóricos , Incertidumbre
10.
R Soc Open Sci ; 6(8): 181860, 2019 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-31598220

RESUMEN

Due to a wide range of applications, sand casting occupies an important position in modern casting practice. The main purpose of this study was to optimize the performance parameters of sand casting based on grey relational analysis and predict the missing data using back propagation (BP) neural network. First, the influence of human factors was eliminated by adopting the objective entropy weight method, which also saved manpower. The larger variation degree in the evaluation indicators, indicating that the evaluated projects had good discrimination in this regard, the larger weight should be given to these evaluation indicators. Second, the performance parameters of sand casting were optimized based on grey relational analysis, providing a reference for sand milling. The larger the grey relational degree, the closer the evaluated project was to the ideal project. Third, this paper provided a new method for determining the number of hidden neurons in a network according to the mean square error of training samples, and venting quality was predicted based on BP neural network. The relevant theory was deduced before predicting missing data, such that there will be a general understanding regarding the prediction principle of BP neural network. Fourth, to demonstrate the validity of BP neural network adopted in the process of missing data prediction, grey system theory was applied to compare the result of missing data prediction.

11.
J Food Biochem ; 43(10): e12787, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31608470

RESUMEN

Determining the quality of red wine is based on many qualitative and quantitative factors. Compared with other evaluation methods, the cloud model has an uncertainty transformation between a qualitative concept and its corresponding quantitative value, and the uncertainty transformation included fuzziness and randomness, which is suitable for solving the complexity of red wine evaluation. This study introduced the cloud model into quality evaluation of red wine for the first time, and a novel algorithm of comprehensive cloud model was proposed based on an addition algorithm of two cloud models. Furthermore, to validate the cloud model adopted in our red wine evaluation system, we used the gray relational analysis and fuzzy evaluation method. The evaluation result for the red wine sample was Good, and the result confirmed that our cloud model can be used to evaluate the quality of red wine. PRACTICAL APPLICATIONS: In 2013, China surpassed France to become the largest country of red wine consumption in the world. Red wine is made by a natural fermentation process. There are several components that make up red wine, but the most abundant is grape juice. Ethyl alcohol is the second most abundant element and it is made naturally by the fermentation of the sugar in grape. There are more than 1,000 remaining components in the recipe for red wine, where 300 are comparatively important. Although the proportion of these components is not high, they are important factors in determining the quality of red wine. Sensory evaluation is the most common method used to determine the quality of red wine. This work has identified a cloud model that can be used, based on sensory evaluation, to determine the quality of red wine.


Asunto(s)
Vino/análisis , Algoritmos , China , Etanol/análisis , Control de Calidad , Vitis/química
12.
R Soc Open Sci ; 5(10): 180915, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30473838

RESUMEN

Sand casting operations, though commonplace, pose a significant threat of explosion accidents. This paper presents a novel sand casting safety assessment technique based on fault tree analysis, Heinrich accident triangle, hazard and operability-layer of protection analysis (HAZOP-LOPA) and bow tie model components. Minimal cut sets and minimal path sets are first determined based on fault tree analysis, then the frequency of sand casting explosion accidents is calculated based on the Heinrich accident triangle. Third, the risk level of venting quality can be reduced by adopting HAZOP-LOPA; the residual risk level of venting quality remains excessive even after adopting two independent protective layers. The bow tie model is then adopted to determine the causes and consequences of venting quality. Five preventative measures are imposed to enhance the venting quality of foundry sand accompanied by 16 mitigative safety measures. Our results indicate that the risk attributable to low foundry sand venting quality can be minimized via bow tie analysis.

13.
R Soc Open Sci ; 5(8): 180397, 2018 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30225027

RESUMEN

Safety assessments are a crucial first step in preventing coal and gas outburst accidents. The main purpose of this study was to create a new accident prevention technique using a novel safety assessment method based on fault tree basic event importance, grey relational analysis and the bow tie model. The innovation of the proposed method lies in generating the composite importance of a basic event from the fundamental importance via grey relational analysis; bow tie analysis serves to reveal the most critical basic event. First, the minimal cut sets and minimal path sets of a coal and gas outburst accident are determined by fault tree analysis. The role of minimal cut and path sets is determined and the coal and gas outburst occurrence frequency is calculated accordingly. Second, the structure, probability, critical and Fussell-Vesely importance ranked basic events differently due to different aspects of the basic events as investigated. We establish a composite importance to represent single basic events and achieved new ranking results by grey relational analysis. Third, the critical basic event low permeability coefficient is analysed via bow tie model and safety measures are defined which prevent the dangerous consequences of a low permeability coefficient. An actual coal and gas outburst accident is used as a case study to test the feasibility and effectiveness of the proposed method.

14.
R Soc Open Sci ; 5(7): 180212, 2018 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-30109076

RESUMEN

Safe production is the foundation of the normal operations of petrochemical enterprises, and it helps maintain social stability. The main purpose of this study is to prevent petrochemical enterprise accidents by proposing a composite safety assessment approach based on the cloud model, preliminary hazard analysis-layer of protection analysis (PHA-LOPA) and the bow-tie model. First, the petrochemical enterprise and its relevant indicators were evaluated based on the cloud model. Second, the quantitative effect of the uncertainty transformation on the evaluation result of the cloud model was further analysed. This mainly includes the error analysis of the numerical characteristics under the conditions of few samples and small values. Third, the critical indicators such as shock and noise can be weakened and prevented by corresponding safety measures based on PHA-LOPA and the bow-tie model. After adopting two independent protection layers, the risk levels of shock and noise decrease from 3 to 2. Then, shock and noise were analysed in depth with the bow-tie model, and the causes and consequences were identified. Moreover, corresponding safety measures were taken to prevent accidents. The case study validated the validity and feasibility of the composite safety assessment approach proposed here.

15.
PLoS One ; 13(3): e0193576, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29561875

RESUMEN

Mine safety assessment is a precondition for ensuring orderly and safety in production. The main purpose of this study was to prevent mine accidents more effectively by proposing a composite risk analysis model. First, the weights of the assessment indicators were determined by the revised integrated weight method, in which the objective weights were determined by a variation coefficient method and the subjective weights determined by the Delphi method. A new formula was then adopted to calculate the integrated weights based on the subjective and objective weights. Second, after the assessment indicator weights were determined, gray relational analysis was used to evaluate the safety of mine enterprises. Mine enterprise safety was ranked according to the gray relational degree, and weak links of mine safety practices identified based on gray relational analysis. Third, to validate the revised integrated weight method adopted in the process of gray relational analysis, the fuzzy evaluation method was used to the safety assessment of mine enterprises. Fourth, for first time, bow tie model was adopted to identify the causes and consequences of weak links and allow corresponding safety measures to be taken to guarantee the mine's safe production. A case study of mine safety assessment was presented to demonstrate the effectiveness and rationality of the proposed composite risk analysis model, which can be applied to other related industries for safety evaluation.


Asunto(s)
Minería , Modelos Teóricos , Salud Laboral , Administración de la Seguridad , Humanos
16.
R Soc Open Sci ; 5(12): 181091, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30662727

RESUMEN

Sand casting, currently the most popular approach to the casting production, has wide adaptability and low cost. The thermal decomposition characteristics of foundry sand for cast iron were determined for the first time in this study. Thermogravimetry was monitored by simultaneous thermal analyser to find that there was no obvious oxidation or combustion reaction in the foundry sand; the thermal decomposition degree increased as the heating rate increased. There was an obvious endothermic peak at about 846 K due to the transition of quartz from ß to α phase. A novel technique was established to calculate the starting temperature of volatile emission in determining the volatile release parameter of foundry sand for cast iron. Foundry sand does not readily evaporate because its volatile content is only about 2.68 wt% and its main components have high-temperature stability. The thermal decomposition kinetics parameters of foundry sand, namely activation energy and pre-exponential factor, were obtained under kinetics theory. The activation energy of foundry sand for cast iron was small, mainly due to the wide temperature range of thermal decomposition in the foundry sand.

17.
R Soc Open Sci ; 5(9): 171580, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-30839727

RESUMEN

To effectively control air pollution, it is necessary to obtain a preliminary assessment of air quality. The purpose of this study was to introduce a cloud model method in air pollution assessment. First, the standard cloud models of air pollution indicators were obtained, and the calculating process of numerical characteristics employed by the standard cloud model was explained. Second, the levels of air pollution indicators were presented based on the qualitative and quantitative analysis of cloud models, which realized the uncertainty conversion between qualitative concepts and their corresponding quantitative values, as well as taking the fuzziness and randomness into account. Air quality assessment results including SO2, NO2, CO, O3, PM10 and PM2.5 were analysed. Third, the cloud model adopted in the assessment process of air quality was validated by grey relational analysis, and the results confirmed the validity of cloud model assessment. Fourth, the air pollution level of the air quality index (AQI) was determined, and the fuzziness and randomness of the assessment results were thoroughly analysed by taking entropy and hyper entropy into consideration. Fifth, seasonal variations in different air pollution indicators were analysed to proffer a series of recommendations for government policy decision-makers and travellers. The cloud model provided a new method for air quality assessment.

19.
Mol Cell Proteomics ; 15(1): 305-17, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26545397

RESUMEN

The original PRIDE Inspector tool was developed as an open source standalone tool to enable the visualization and validation of mass-spectrometry (MS)-based proteomics data before data submission or already publicly available in the Proteomics Identifications (PRIDE) database. The initial implementation of the tool focused on visualizing PRIDE data by supporting the PRIDE XML format and a direct access to private (password protected) and public experiments in PRIDE.The ProteomeXchange (PX) Consortium has been set up to enable a better integration of existing public proteomics repositories, maximizing its benefit to the scientific community through the implementation of standard submission and dissemination pipelines. Within the Consortium, PRIDE is focused on supporting submissions of tandem MS data. The increasing use and popularity of the new Proteomics Standards Initiative (PSI) data standards such as mzIdentML and mzTab, and the diversity of workflows supported by the PX resources, prompted us to design and implement a new suite of algorithms and libraries that would build upon the success of the original PRIDE Inspector and would enable users to visualize and validate PX "complete" submissions. The PRIDE Inspector Toolsuite supports the handling and visualization of different experimental output files, ranging from spectra (mzML, mzXML, and the most popular peak lists formats) and peptide and protein identification results (mzIdentML, PRIDE XML, mzTab) to quantification data (mzTab, PRIDE XML), using a modular and extensible set of open-source, cross-platform libraries. We believe that the PRIDE Inspector Toolsuite represents a milestone in the visualization and quality assessment of proteomics data. It is freely available at http://github.com/PRIDE-Toolsuite/.


Asunto(s)
Biología Computacional/métodos , Bases de Datos de Proteínas , Proteoma/metabolismo , Proteómica/métodos , Programas Informáticos , Internet , Reproducibilidad de los Resultados , Espectrometría de Masas en Tándem
20.
Nucleic Acids Res ; 44(D1): D447-56, 2016 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-26527722

RESUMEN

The PRoteomics IDEntifications (PRIDE) database is one of the world-leading data repositories of mass spectrometry (MS)-based proteomics data. Since the beginning of 2014, PRIDE Archive (http://www.ebi.ac.uk/pride/archive/) is the new PRIDE archival system, replacing the original PRIDE database. Here we summarize the developments in PRIDE resources and related tools since the previous update manuscript in the Database Issue in 2013. PRIDE Archive constitutes a complete redevelopment of the original PRIDE, comprising a new storage backend, data submission system and web interface, among other components. PRIDE Archive supports the most-widely used PSI (Proteomics Standards Initiative) data standard formats (mzML and mzIdentML) and implements the data requirements and guidelines of the ProteomeXchange Consortium. The wide adoption of ProteomeXchange within the community has triggered an unprecedented increase in the number of submitted data sets (around 150 data sets per month). We outline some statistics on the current PRIDE Archive data contents. We also report on the status of the PRIDE related stand-alone tools: PRIDE Inspector, PRIDE Converter 2 and the ProteomeXchange submission tool. Finally, we will give a brief update on the resources under development 'PRIDE Cluster' and 'PRIDE Proteomes', which provide a complementary view and quality-scored information of the peptide and protein identification data available in PRIDE Archive.


Asunto(s)
Bases de Datos de Proteínas , Espectrometría de Masas , Proteómica , Péptidos/química , Proteínas/química , Proteínas/metabolismo , Programas Informáticos , Interfaz Usuario-Computador
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