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1.
Hortic Res ; 10(12): uhad214, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-38077494

RESUMEN

Wax apple (Syzygium samarangense) is an economically important fruit crop with great potential value to human health because of its richness in antioxidant substances. Here, we present a haplotype-resolved autotetraploid genome assembly of the wax apple with a size of 1.59 Gb. Comparative genomic analysis revealed three rounds of whole-genome duplication (WGD) events, including two independent WGDs after WGT-γ. Resequencing analysis of 35 accessions partitioned these individuals into two distinct groups, including 28 landraces and seven cultivated species, and several genes subject to selective sweeps possibly contributed to fruit growth, including the KRP1-like, IAA17-like, GME-like, and FLACCA-like genes. Transcriptome analysis of three different varieties during flower and fruit development identified key genes related to fruit size, sugar content, and male sterility. We found that AP2 also affected fruit size by regulating sepal development in wax apples. The expression of sugar transport-related genes (SWEETs and SUTs) was high in 'ZY', likely contributing to its high sugar content. Male sterility in 'Tub' was associated with tapetal abnormalities due to the decreased expression of DYT1, TDF1, and AMS, which affected early tapetum development. The chromosome-scale genome and large-scale transcriptome data presented in this study offer new valuable resources for biological research on S. samarangense and shed new light on fruit size control, sugar metabolism, and male sterility regulatory metabolism in wax apple.

2.
iScience ; 26(12): 108561, 2023 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-38144459

RESUMEN

Hematopoietic stem cell (HSC) surface markers improve the understanding of cell identity and function. Here, we report that human HSCs can be distinguished by their expression of the CEA Cell Adhesion Molecule 5 (CEACAM5, CD66e), which serves as a marker and a regulator of HSC function. CD66e+ cells exhibited a 5.5-fold enrichment for functional long term HSCs compared to CD66e- cells. CD66e+CD34+CD90+CD45RA- cells displayed robust multi-lineage repopulation and serial reconstitution ability in immunodeficient mice compared to CD66e-CD34+CD90+CD45RA-cells. CD66e expression also identified almost all repopulating HSCs within the CD34+CD90+CD45RA- population. Together, these results indicated that CEACAM5 is a marker that enriches functional human hematopoietic stem cells capable of long-term multi-lineage engraftment.

3.
Educ Psychol Meas ; 83(4): 649-683, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-37398842

RESUMEN

Zhang and Savalei proposed an alternative scale format to the Likert format, called the Expanded format. In this format, response options are presented in complete sentences, which can reduce acquiescence bias and method effects. The goal of the current study was to compare the psychometric properties of the Rosenberg Self-Esteem Scale (RSES) in the Expanded format and in two other alternative formats, relative to several versions of the traditional Likert format. We conducted two studies to compare the psychometric properties of the RSES across the different formats. We found that compared with the Likert format, the alternative formats tend to have a unidimensional factor structure, less response inconsistency, and comparable validity. In addition, we found that the Expanded format resulted in the best factor structure among the three alternative formats. Researchers should consider the Expanded format, especially when creating short psychological scales such as the RSES.

4.
Front Plant Sci ; 14: 1134308, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36909446

RESUMEN

Early-matured aromatic japonica rice from the Northeast is the most popular rice commodity in the Chinese market. The Qigeng10 (QG10) was one of the varieties with the largest planting area in this region in recent years. It was an early-matured japonica rice variety with a lot of superior traits such as semi-dwarf, lodging resistance, long grain, aromatic and good quality. Therefore, a high-quality assembly of Qigeng10 genome is critical and useful for japonica research and breeding. In this study, we produced a high-precision QG10 chromosome-level genome by using a combination of Nanopore and Hi-C platforms. Finally, we assembled the QG10 genome into 77 contigs with an N50 length of 11.80 Mb in 27 scaffolds with an N50 length of 30.55 Mb. The assembled genome size was 378.31Mb with 65 contigs and constituted approximately 99.59% of the 12 chromosomes. We identified a total of 1,080,819 SNPs and 682,392 InDels between QG10 and Nipponbare. We also annotated 57,599 genes by the Ab initio method, homology-based technique, and RNA-seq. Based on the assembled genome sequence, we detected the sequence variation in a total of 63 cloned genes involved in grain yield, grain size, disease tolerance, lodging resistance, fragrance, and many other important traits. Finally, we identified five elite alleles (qTGW2Nipponbare , qTGW3Nanyangzhan , GW5IR24 , GW6Suyunuo , and qGW8Basmati385 ) controlling long grain size, four elite alleles (COLD1Nipponbare , bZIP73Nipponbare , CTB4aKunmingxiaobaigu , and CTB2Kunmingxiaobaigu ) controlling cold tolerance, three non-functional alleles (DTH7Kitaake , Ghd7Hejiang19 , and Hd1Longgeng31 ) for early heading, two resistant alleles (PiaAkihikari and Pid4Digu ) for rice blast, a resistant allele STV11Kasalath for rice stripe virus, an NRT1.1BIR24 allele for higher nitrate absorption activity, an elite allele SCM3Chugoku117 for stronger culms, and the typical aromatic gene badh2-E2 for fragrance in QG10. These results not only help us to better elucidate the genetic mechanisms underlying excellent agronomic traits in QG10 but also have wide-ranging implications for genomics-assisted breeding in early-matured fragrant japonica rice.

5.
Int J Mol Sci ; 24(6)2023 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-36982870

RESUMEN

Chloroplasts are essential sites for plant photosynthesis, and the biogenesis of the photosynthetic complexes involves the interaction of nuclear genes and chloroplast genes. In this study, we identified a rice pale green leaf mutant, crs2. The crs2 mutant showed different degrees of low chlorophyll phenotypes at different growth stages, especially at the seedling stage. Fine mapping and DNA sequencing of crs2 revealed a single nucleotide substitution (G4120A) in the eighth exons of CRS2, causing a G-to-R mutation of the 229th amino acid of CRS2 (G229R). The results of complementation experiments confirmed that this single-base mutation in crs2 is responsible for the phenotype of the crs2 mutant. CRS2 encodes a chloroplast RNA splicing 2 protein localized in the chloroplast. Western blot results revealed an abnormality in the abundance of the photosynthesis-related protein in crs2. However, the mutation of CRS2 leads to the enhancement of antioxidant enzyme activity, which could reduce ROS levels. Meanwhile, with the release of Rubisco activity, the photosynthetic performance of crs2 was improved. In summary, the G229R mutation in CRS2 causes chloroplast protein abnormalities and affects photosystem performance in rice; the above findings facilitate the elucidation of the physiological mechanism of chloroplast proteins affecting photosynthesis.


Asunto(s)
Oryza , Oryza/metabolismo , Nucleótidos/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Fotosíntesis/genética , Cloroplastos/metabolismo , Clorofila/metabolismo , Fenotipo , Mutación , Regulación de la Expresión Génica de las Plantas , Hojas de la Planta/metabolismo
6.
Int J Mol Sci ; 24(1)2023 Jan 03.
Artículo en Inglés | MEDLINE | ID: mdl-36614255

RESUMEN

Rice breeders are now developing new varieties with semi-high or even high plant height to further increase the grain yield, and the problem of lodging has re-appeared. We identified a major quantitative trait locus (QTL), qSCM4, for resistance to lodging by using an F2 segregant population and a recombinant self-incompatible line population from the cross between Shennong265 (SN265) and Lijiangxintuanheigu (LTH) after multiple years and multiple environments. Then, the residual heterozygous derived segregant population which consisted of 1781 individual plants, and the BC3F2 segregant population which consisted of 3216 individual plants, were used to shorten the physical interval of qSCM4 to 58.5 kb including 11 genes. DNA sequencing revealed the most likely candidate gene for qSCM4 was Os04g0615000, which encoded a functional protein with structural domains of serine and cysteine. There were 13 DNA sequence changes in LTH compared to SN265 in this gene, including a fragment deletion, two base changes in the 3' UTR region, six base changes in the exons, and four base changes in the introns. A near-isogenic line carrying qSCM4 showed that it improved the lodging resistance through increasing stem thickness by 25.3% and increasing stem folding resistance by 20.3%. Furthermore, it was also discovered that qSCM4 enhanced the primary branch per panicle by 16.7%, secondary branch by per panicle 9.9%, and grain number per panicle by 14.7%. All the above results will give us a valuable genetic resource for concurrently boosting culm strength and lodging resistance, and they will also provide a basis for further research on the lodging resistance mechanism of rice.


Asunto(s)
Oryza , Sitios de Carácter Cuantitativo , Oryza/genética , Oryza/metabolismo , Grano Comestible/genética , Grano Comestible/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Intrones
7.
Psychol Methods ; 28(2): 263-283, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-35007107

RESUMEN

The full-information maximum likelihood (FIML) is a popular estimation method for missing data in structural equation modeling (SEM). However, previous research has shown that SEM approximate fit indices (AFIs) such as the root mean square error of approximation (RMSEA) and the comparative fit index (CFI) can be distorted relative to their complete data counterparts when they are computed following the FIML estimation. The main goal of the current paper is to propose and examine an alternative approach for computing AFIs following the FIML estimation, which we refer to as the FIML-corrected or FIML-C approach. The secondary goal of the article is to examine another existing estimation method, the two-stage (TS) approach, for computing AFIs in the presence of missing data. Both FIML-C and TS approaches remove the bias due to missing data, so that the resulting incomplete data AFIs estimate the same population values as their complete data counterparts. For both approaches, we also propose a series of small sample corrections to improve the estimates of AFIs. In two simulation studies, we found that the FIML-C and TS approaches, when implemented with small sample corrections, estimated the population-complete-data AFIs with little bias across a variety of conditions, although the FIML-C approach can fail in a small number of conditions with a high percentage of missing data and a high degree of model misspecification. In contrast, the FIML AFIs as currently computed often performed poorly. We recommend FIML-C and TS approaches for computing AFIs in SEM. (PsycInfo Database Record (c) 2023 APA, all rights reserved).


Asunto(s)
Interpretación Estadística de Datos , Humanos , Simulación por Computador , Análisis de Clases Latentes , Sesgo
8.
Ecol Evol ; 12(10): e9374, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-36267685

RESUMEN

Association is the basic unit of plant community classification. Exploring the distribution of plant associations can help improve our understanding of biodiversity conservation. Different associations depend on different habitats and studying the association level is important for ecological restoration, regional ecological protection, regulating the ecological balance, and maintaining biodiversity. However, previous studies have only focused on suitable distribution areas for species and not on the distribution of plant associations. Larix gmelinii is a sensitive and abundant species that occurs along the southern margin of the Eurasian boreal forests, and its distribution is closely related to permafrost. In this study, 420 original plots of L. gmelinii forests were investigated. We used a Maxent model and the ArcGIS software to project the potential geographical distribution of L. gmelinii associations in the future (by 2050 and 2070) according to the climate scenarios RCP 2.6, RCP 4.5, and RCP 8.5. We used the multi-classification logistic regression analysis method to obtain the response of the suitable area change for the L. gmelinii alliance and associations to climate change under different climate scenarios. Results revealed that temperature is the most crucial factor affecting the distribution of L. gmelinii forests and most of its associations under different climate scenarios. Suitable areas for each association type are shrinking by varying degrees, especially due to habitat loss at high altitudes in special terrains. Different L. gmelinii associations should have different management measures based on the site conditions, composition structure, growth, development, and renewal succession trends. Subsequent research should consider data on biological factors to obtain more accurate prediction results.

9.
Mitochondrial DNA B Resour ; 7(6): 977-979, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35712540

RESUMEN

Syzygium samarangense (Blume) Merr. et Perry, 1938, commonly known as wax apple, is a Myrtaceae species that is known for its unique fruit shape, flavorful and colorful fruits, medicinal value and increasing economic relevance. In this study, we reported the complete chloroplast genome sequence of S. samarangense. The complete genome is 159,109 bp in length with a quadripartite structure containing two single copy regions, a Large Single Copy region (LSC, 88,155 bp) and a Small Single Copy region (SSC, 18,796 bp) separated by Inverted Repeat regions (IRs, 26,079 bp). The GC content was 37.0%. It encoded 126 genes, including 81 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. The phylogenetic relationships of 20 species inferred that all Syzygium species formed a single cluster belonging to Syzygieae tribe. Our results offer insights into the evolutionary relationship of S. samarangense within Myrtaceae, indicating a closer relationship between S. samarangense and S. forrestii.

10.
Psychol Methods ; 2022 Mar 14.
Artículo en Inglés | MEDLINE | ID: mdl-35286105

RESUMEN

The central limit theorem (CLT) is one of the most important theorems in statistics, and it is often introduced to social sciences researchers in an introductory statistics course. However, the recent replication crisis in the social sciences prompts us to investigate just how common certain misconceptions of statistical concepts are. The main purposes of this article are to investigate the misconceptions of the CLT among social sciences researchers and to address these misconceptions by clarifying the definition and properties of the CLT in a manner that is approachable to social science researchers. As part of our article, we conducted a survey to examine the misconceptions of the CLT among graduate students and researchers in the social sciences. We found that the most common misconception of the CLT is that researchers think the CLT is about the convergence of sample data to the normal distribution. We also found that most researchers did not realize that the CLT applies to both sample means and sample sums, and that the CLT has implications for many common statistical concepts and techniques. Our article addresses these misconceptions of the CLT by explaining the preliminaries needed to understand the CLT, introducing the formal definition of the CLT, and elaborating on the implications of the CLT. We hope that through this article, researchers can obtain a more accurate and nuanced understanding of how the CLT operates as well as its role in a variety of statistical concepts and techniques. (PsycInfo Database Record (c) 2022 APA, all rights reserved).

11.
Biol Pharm Bull ; 44(3): 396-403, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33642547

RESUMEN

Ferulic acid (FA) has potential therapeutic effects in multiple diseases including cardiovascular diseases. However, the effect and molecular basis of FA in heart failure (HF) has not been thoroughly elucidated. Herein, we investigated the roles and mechanisms of FA in HF in isoproterenol (ISO)-induced HF rat model. Results found that FA ameliorated cardiac dysfunction, alleviated oxidative stress, reduced cell/myocardium injury-related enzyme plasma level, inhibited cardiocyte apoptosis in ISO-induced HF rat models. Moreover, FA reduced the co-localization of Keap1 and nuclear factor-E2-related factor 2 (Nrf2) in heart tissues of ISO-induced HF rats, and FA alleviated the inhibitory effects of ISO on expressions of p-Nrf2, heme oxygenase-1 (HO-1) and reduced nicotinamide adenine dinucleotide phosphate quinone dehydrogenase 1 (NQO1). Additionally, Nrf2 signaling pathway inhibitor ML385 showed adverse effects. FA weakened the effects of ML385 in ISO-induced HF rat models. Collectively, FA ameliorated HF by decreasing oxidative stress and inhibiting cardiocyte apoptosis via activating Nrf2 pathway in ISO-induced HF rats. Our data elucidated the underling molecular mechanism and provided a novel insight into the cardioprotective function of FA, thus suggested the therapeutic potential of FA in HF treatment.


Asunto(s)
Cardiotónicos/uso terapéutico , Ácidos Cumáricos/uso terapéutico , Insuficiencia Cardíaca/tratamiento farmacológico , Animales , Apoptosis/efectos de los fármacos , Cardiotónicos/farmacología , Ácidos Cumáricos/farmacología , Insuficiencia Cardíaca/inducido químicamente , Insuficiencia Cardíaca/metabolismo , Insuficiencia Cardíaca/fisiopatología , Isoproterenol , Masculino , Miocardio/metabolismo , Miocitos Cardíacos/efectos de los fármacos , Factor 2 Relacionado con NF-E2/metabolismo , Estrés Oxidativo/efectos de los fármacos , Ratas Sprague-Dawley , Transducción de Señal/efectos de los fármacos
12.
Zhongguo Zhen Jiu ; 40(10): 1037-41, 2020 Oct 12.
Artículo en Chino | MEDLINE | ID: mdl-33068342

RESUMEN

OBJECTIVE: To compare the clinical efficacy of the acupuncture technique of Jingou Diaoyu combined with speech rehabilitation training and speech rehabilitation training alone for post-stroke motor aphasia. METHODS: A total of 70 patients with post-stroke motor aphasia were randomly divided into an observation group and a control group, 35 cases in each group. The patients in the control group were treated with basic treatment and speech rehabilitation training; on the basis of the control group, the patients in the observation group were treated with the acupuncture technique of Jingou Diaoyu at Yamen (GV 15), Jinjin (EX-HN 12), Yuye (EX-HN 13), and Hegu (LI 4) etc., once a day, 6 days per week, for a total of 4 weeks. The speech function score, aphasia grade, daily life speech ability score of the two groups before and after treatment were observed, and the clinical efficacy was evaluated. RESULTS: The total effective rate was 94.3% (33/35) in the observation group, which was superior to 80.0% (28/35) in the control group (P<0.05). In addition to listening comprehension, each score of speech function in the two groups was significantly increased after treatment (P<0.05), and the increasing in the observation group was greater than that in the control group (P<0.05). After treatment, the aphasia grade of the two groups were improved (P<0.05), and the aphasia grade in the observation group was significantly better than that in the control group (P<0.05). After treatment, the scores of daily life speech ability in the two groups were significantly improved (P<0.05), and the increasing in the observation group was greater than that in the control group (P<0.05). CONCLUSION: The acupuncture technique of Jingou Diaoyu combined with speech rehabilitation training could improve the speech function of patients with post-stroke motor aphasia, and its curative effect is superior to the speech rehabilitation training alone.


Asunto(s)
Terapia por Acupuntura , Afasia/terapia , Logopedia , Accidente Cerebrovascular , Afasia/etiología , Humanos , Habla , Accidente Cerebrovascular/complicaciones , Resultado del Tratamiento
13.
Biosci Rep ; 40(6)2020 06 26.
Artículo en Inglés | MEDLINE | ID: mdl-32478378

RESUMEN

Osteoporosis (OP) is significant and debilitating comorbidity of chronic obstructive pulmonary disease (COPD). We hypothesize that genetic variance identified with OP may also play roles in COPD. We have conducted a large-scale relation data analysis to explore the genes implicated with either OP or COPD, or both. Each gene linked to OP but not to COPD was further explored in a mega-analysis and partial mega-analysis of 15 independently collected COPD RNA expression datasets, followed by gene set enrichment analysis (GSEA) and literature-based pathway analysis to explore their functional linked to COPD. A multiple linear regression (MLR) model was built to study the possible influence of sample size, population region, and study date on the gene expression data in COPD. At the first step of the analysis, we have identified 918 genes associated with COPD, 581 with OP, and a significant overlap (P<2.30e-140; 210 overlapped genes). Partial mega-analysis showed that, one OP gene, GPNMB presented significantly increased expression in COPD patients (P-value = 0.0018; log fold change = 0.83). GPNMB was enriched in multiple COPD pathways and plays roles as a gene hub formulating multiple vicious COPD pathways included gene MMP9 and MYC. GPNMB could be a novel gene that plays roles in both COPD and OP. Partial mega-analysis is valuable in identify case-specific genes for COPD.


Asunto(s)
Glicoproteínas de Membrana/genética , Osteoporosis/genética , Enfermedad Pulmonar Obstructiva Crónica/genética , Bases de Datos Genéticas , Perfilación de la Expresión Génica , Redes Reguladoras de Genes , Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Humanos , Osteoporosis/diagnóstico , Fenotipo , Enfermedad Pulmonar Obstructiva Crónica/diagnóstico , Medición de Riesgo , Factores de Riesgo , Transcriptoma
14.
Int J Mol Sci ; 21(4)2020 Feb 14.
Artículo en Inglés | MEDLINE | ID: mdl-32074988

RESUMEN

Among all cereals, rice is highly sensitive to cold stress, especially at the germination stage, which adversely impacts its germination ability, seed vigor, crop stand establishment, and, ultimately, grain yield. The dissection of novel quantitative trait loci (QTLs) or genes conferring a low-temperature germination (LTG) ability can significantly accelerate cold-tolerant rice breeding to ensure the wide application of rice cultivation through the direct seeding method. In this study, we identified 11 QTLs for LTG using 144 recombinant inbred lines (RILs) derived from a cross between a cold-tolerant variety, Lijiangxintuanheigu (LTH), and a cold-sensitive variety, Shennong265 (SN265). By resequencing two parents and RIL lines, a high-density bin map, including 2,828 bin markers, was constructed using 123,859 single-nucleotide polymorphisms (SNPs) between two parents. The total genetic distance corresponding to all 12 chromosome linkage maps was 2,840.12 cm. Adjacent markers were marked by an average genetic distance of 1.01 cm, corresponding to a 128.80 kb physical distance. Eight and three QTL alleles had positive effects inherited from LTH and SN265, respectively. Moreover, a pleiotropic QTL was identified for a higher number of erected panicles and a higher grain number on Chr-9 near the previously cloned DEP1 gene. Among the LTG QTLs, qLTG3 and qLTG7b were also located at relatively small genetic intervals that define two known LTG genes, qLTG3-1 and OsSAP16. Sequencing comparisons between the two parents demonstrated that LTH possesses qLTG3-1 and OsSAP16 genes, and SN-265 owns the DEP1 gene. These comparison results strengthen the accuracy and mapping resolution power of the bin map and population. Later, fine mapping was done for qLTG6 at 45.80 kb through four key homozygous recombinant lines derived from a population with 1569 segregating plants. Finally, LOC_Os06g01320 was identified as the most possible candidate gene for qLTG6, which contains a missense mutation and a 32-bp deletion/insertion at the promoter between the two parents. LTH was observed to have lower expression levels in comparison with SN265 and was commonly detected at low temperatures. In conclusion, these results strengthen our understanding of the impacts of cold temperature stress on seed vigor and germination abilities and help improve the mechanisms of rice breeding programs to breed cold-tolerant varieties.


Asunto(s)
Ligamiento Genético , Germinación/genética , Oryza/genética , Estrés Fisiológico , Mapeo Cromosómico , Frío , ADN de Plantas/química , ADN de Plantas/metabolismo , Genotipo , Oryza/crecimiento & desarrollo , Fenotipo , Proteínas de Plantas/genética , Polimorfismo de Nucleótido Simple , Regiones Promotoras Genéticas , Sitios de Carácter Cuantitativo , Semillas/genética , Semillas/crecimiento & desarrollo , Secuenciación Completa del Genoma
15.
Front Psychol ; 10: 1286, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31214090

RESUMEN

Previous research by Zhang and Savalei (2015) proposed an alternative scale format to the Likert scale format: the Expanded format. Scale items in the Expanded format present both positively worded and negatively worded sentences as response options for each scale item; therefore, they were less affected by the acquiescence bias and method effects that often occur in the Likert scale items. The major goal of the current study is to further demonstrate the superiority of the Expanded format to the Likert format across different psychological scales. Specifically, we aim to replicate the findings of Zhang and Savalei and to determine whether order effect exists in the Expanded format scales. Six psychological scales were examined in the study, including the five subscales of the big five inventory (BFI) and the Rosenberg self-esteem (RSE) scale. Four versions were created for each psychological scale. One version was the original scale in the Likert format. The other three versions were in different Expanded formats that varied in the order of the response options. For each scale, the participant was randomly assigned to complete one scale version. Across the different versions of each scale, we compared the factor structures and the distributions of the response options. Our results successfully replicated the findings of Zhang and Savalei, and also showed that order effect was generally absent in the Expanded format scales. Based on these promising findings, we encourage researchers to use the Expanded format for these and other scales in their substantive research.

16.
J Environ Sci (China) ; 64: 289-297, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29478650

RESUMEN

Water regime and nitrogen (N) fertilizer are two important factors impacting greenhouse gases (GHG) emission from paddy field, whereas their effects have not been well studied in cold region. In this study, we conducted a two-year field experiment to study the impacts of water regime and N fertilizer on rice yields and GHG emissions in Harbin, China, a cold region located in high latitudes. Our results showed that intermittent irrigation significantly decreased methane (CH4) emission compared with continuous flooding, however, the decrement was far lower than the global average level. The N2O emissions were very small when flooded but peaked at the beginning of the disappearance of floodwater. The N fertilizer treatments increased CH4 emissions at low level (75kgN/ha). But both CH4 and N2O emissions were uninfluenced at the levels of 150kgN/ha and 225kgN/ha. Rice yields increased under intermittent irrigation and were highest at the level of 150kgN/ha. From our results, we recommended that the intermittent irrigation and 150kgN/ha as the ideal water regime-nitrogen fertilizer incorporation for this area to achieve low GHG emissions without impacting rice yields.


Asunto(s)
Agricultura , Contaminantes Atmosféricos/análisis , Ecosistema , Fertilizantes/análisis , Agua Dulce/química , Óxido Nitroso/análisis , Contaminantes Atmosféricos/química , China , Ciclo del Nitrógeno , Óxido Nitroso/química , Oryza
18.
PLoS One ; 12(7): e0181037, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28715430

RESUMEN

Japonica rice mainly distributes in north of China, which accounts for more than half of the total japonica rice cultivated area of China. High yield, good grain quality and early heading date were the main breeding traits and commercial property in this region. We performed re-sequencing and genome wide variation analysis of one typical northern japonica rice variety Longdao24 and its parents (Longdao5 and Jigeng83) using the Illumina sequencing technology. 53.17 G clean bases were generated and more than 96.8% of the reads were mapped to the genomic reference sequence. An overall average effective depth of 43.67 × coverage was achieved. We identified 420,475 SNPs, 95,624 InDels, and 14,112 SVs in Longdao24 genome with the genomic sequence of the japonica cultivar Nipponbare as reference. We identified 361,117 SNPs and 81,488 InDels between Longdao24 genome and Longdao5 genome. We also detected 428,908 SNPs and 97,209 InDels between Longdao24 genome and Jigeng83 genome. Twenty-two yield related genes, twenty-two grain quality related genes and thirty-nine heading date genes were analyzed in Longdao24. The alleles of Gn1a, EP3, SCM2, Wx, ALK, OsLF and Hd17 came from the female parent Longdao5. The other alleles of qGW8, SSIVa, SBE3, SSIIIb, SSIIc, DTH2, Ehd3 and OsMADS56 came from the male parent Jigeng83. These results will help us to research the genetics basis of yield, grain quality and early heading date in northern rice of China.


Asunto(s)
Variación Genética , Genoma de Planta , Oryza/genética , Alelos , ADN de Plantas/química , ADN de Plantas/aislamiento & purificación , ADN de Plantas/metabolismo , Frecuencia de los Genes , Genotipo , Secuenciación de Nucleótidos de Alto Rendimiento , Mutación INDEL , Fenotipo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Polimorfismo de Nucleótido Simple , Análisis de Secuencia de ADN , Almidón/química , Almidón/metabolismo
19.
PLoS One ; 11(6): e0157795, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27305001

RESUMEN

Reverse worded (RW) items are often used to reduce or eliminate acquiescence bias, but there is a rising concern about their harmful effects on the covariance structure of the scale. Therefore, results obtained via traditional covariance analyses may be distorted. This study examined the effect of the RW items on the factor structure of the abbreviated 18-item Need for Cognition (NFC) scale using confirmatory factor analysis. We modified the scale to create three revised versions, varying from no RW items to all RW items. We also manipulated the type of the RW items (polar opposite vs. negated). To each of the four scales, we fit four previously developed models. The four models included a 1-factor model, a 2-factor model distinguishing between positively worded (PW) items and RW items, and two 2-factor models, each with one substantive factor and one method factor. Results showed that the number and type of the RW items affected the factor structure of the NFC scale. Consistent with previous research findings, for the original NFC scale, which contains both PW and RW items, the 1-factor model did not have good fit. In contrast, for the revised scales that had no RW items or all RW items, the 1-factor model had reasonably good fit. In addition, for the scale with polar opposite and negated RW items, the factor model with a method factor among the polar opposite items had considerably better fit than the 1-factor model.


Asunto(s)
Cognición/fisiología , Análisis Factorial , Modelos Teóricos , Encuestas y Cuestionarios , Adolescente , Adulto , Sesgo , Distribución de Chi-Cuadrado , Femenino , Humanos , Masculino , Reproducibilidad de los Resultados , Adulto Joven
20.
Educ Psychol Meas ; 76(3): 357-386, 2016 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-27182074

RESUMEN

Many psychological scales written in the Likert format include reverse worded (RW) items in order to control acquiescence bias. However, studies have shown that RW items often contaminate the factor structure of the scale by creating one or more method factors. The present study examines an alternative scale format, called the Expanded format, which replaces each response option in the Likert scale with a full sentence. We hypothesized that this format would result in a cleaner factor structure as compared with the Likert format. We tested this hypothesis on three popular psychological scales: the Rosenberg Self-Esteem scale, the Conscientiousness subscale of the Big Five Inventory, and the Beck Depression Inventory II. Scales in both formats showed comparable reliabilities. However, scales in the Expanded format had better (i.e., lower and more theoretically defensible) dimensionalities than scales in the Likert format, as assessed by both exploratory factor analyses and confirmatory factor analyses. We encourage further study and wider use of the Expanded format, particularly when a scale's dimensionality is of theoretical interest.

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