Shifts in functional traits and interactions patterns of soil methane-cycling communities following forest-to-pasture conversion in the Amazon Basin.

Deforestation threatens the integrity of the Amazon biome and the ecosystem services it provides, including greenhouse gas mitigation. Forest-to-pasture conversion has been shown to alter the flux of methane gas (CH4 ) in Amazonian soils, driving a switch from acting as a sink to a source of atmospheric CH4 . This study aimed to better understand this phenomenon by investigating soil microbial metagenomes, focusing on the taxonomic and functional structure of methane-cycling communities. Metagenomic data from forest and pasture soils were combined with measurements of in situ CH4 fluxes and soil edaphic factors and analysed using multivariate statistical approaches. We found a significantly higher abundance and diversity of methanogens in pasture soils. As inferred by co-occurrence networks, these microorganisms seem to be less interconnected within the soil microbiota in pasture soils. Metabolic traits were also different between land uses, with increased hydrogenotrophic and methylotrophic pathways of methanogenesis in pasture soils. Land-use change also induced shifts in taxonomic and functional traits of methanotrophs, with bacteria harbouring genes encoding the soluble form of methane monooxygenase enzyme (sMMO) depleted in pasture soils. Redundancy analysis and multimodel inference revealed that the shift in methane-cycling communities was associated with high pH, organic matter, soil porosity and micronutrients in pasture soils. These results comprehensively characterize the effect of forest-to-pasture conversion on the microbial communities driving the methane-cycling microorganisms in the Amazon rainforest, which will contribute to the efforts to preserve this important biome.

Mechanical and Hydric Stress Effects on Maize Root System Development at Different Soil Compaction Levels.

Soil mechanical resistance, aeration, and water availability directly affect plant root growth. The objective of this work was to identify the contribution of mechanical and hydric stresses on maize root elongation, by modeling root growth while taking the dynamics of these stresses in an Oxisol into consideration. The maize crop was cultivated under four compaction levels (soil chiseling, no-tillage system, areas trafficked by a tractor, and trafficked by a harvester), and we present a new model, which allows to distinguish between mechanical and hydric stresses. Root length density profiles, soil bulk density, and soil water retention curves were determined for four compaction levels up to 50 cm in depth. Furthermore, grain yield and shoot biomass of maize were quantified. The new model described the mechanical and hydric stresses during maize growth with field data for the first time in maize crop. Simulations of root length density in 1D and 2D showed adequate agreement with the values measured under field conditions. Simulation makes it possible to identify the interaction between the soil physical conditions and maize root growth. Compared to the no-tillage system, grain yield was reduced due to compaction caused by harvester traffic and by soil chiseling. The root growth was reduced by the occurrence of mechanical and hydric stresses during the crop cycle, the principal stresses were mechanical in origin for areas with agricultural traffic, and water based in areas with soil chiseling. Including mechanical and hydric stresses in root growth models can help to predict future scenarios, and coupling soil biophysical models with weather, soil, and crop responses will help to improve agricultural management.