Invasive Species Change Plant Community Composition of Preserved Prairie Pothole Wetlands.

Plant communities in North American prairie pothole wetlands vary depending on hydrology, salinity, and anthropogenic disturbance in and around the wetland. We assessed prairie pothole conditions on United States Fish and Wildlife Service fee-title lands in North Dakota and South Dakota to improve our understanding of current conditions and plant community composition. Species-level data were collected at 200 randomly chosen temporary and seasonal wetland sites located on native prairie remnants (n = 48) and previously cultivated lands that were reseeded into perennial grassland (n = 152). The majority of species surveyed appeared infrequently and were low in relative cover. The four most frequently observed species were introduced invasive species common to the Prairie Pothole Region of North America. Our results suggested relative cover of a few invasive species (i.e., Bromus inermis Leyss., Phalaris arundinacea L., and Typha ×glauca Godr. (pro sp.) [angustifolia or domingensis × latifolia]) affect patterns of plant community composition. Wetlands in native and reseeded grasslands possessed distinct plant community composition related to invasive species' relative cover. Invasive species continue to be prevalent throughout the region and pose a major threat to biological diversity, even in protected native prairie remnants. Despite efforts to convert past agricultural land into biologically diverse, productive ecosystems, invasive species continue to dominate these landscapes and are becoming prominent in prairie potholes located in native areas.

Characterization of the complete chloroplast genome of Bromus inermis Leyss.

Bromus Inermis Leyss 1761 is a perennial herb with large yield and famous for its high nutritional value and long utilization season. The study of B. inermis chloroplast (cp) genome provides an important basis for the study of chloroplast genetic engineering and system evolution. Its cp genome was 137,153 bp in length, containing a pair of inverted repeated (IR) regions (21,699 bp), separated by a large single copy region (LSC) of 81,137 bp, and a small single copy (SSC) region of 12,618 bp. Moreover, a total of 129 functional genes were annotated, including 83 mRNA, 38 tRNA genes, and 8 rRNA genes. The phylogenetic relationships of 15 species indicated that B. inermis was closely related to Bromus biebersteinii. This study might contribute to provide a theoretical basis for species identification and biological research.

Biases underlying species detection using fluorescent amplified-fragment length polymorphisms yielded from roots.

BACKGROUND: Roots of different plant species are typically morphologically indistinguishable. Of the DNA-based techniques, fluorescent amplified-fragment length polymorphisms (FAFLPs) are considered reliable, high throughput, inexpensive methods to identify roots from mixed species samples. False-negatives, however, are not uncommon and their underlying causes are poorly understood. We investigated several sources of potential biases originating in DNA extraction and amplification. Specifically, we examined the effects of sample storage, tissue, and species on DNA yield and purity, and the effects of DNA concentration and fragment size on amplification of three non-coding chloroplast regions (trnT-trnL intergenic spacer, trnL intron, and trnL-trnF intergenic spacer). RESULTS: We found that sample condition, tissue and species all affected DNA yield. A single freeze-thaw reduces DNA yield, DNA yield is less for roots than shoots, and species vary in the amount of DNA yielded from extractions. The effects of template DNA concentration, species identity, and their interaction on amplicon yield differed across the three chloroplast regions tested. We found that the effect of species identity on amplicon production was generally more pronounced than that of DNA concentration. Though these factors influenced DNA yield, they likely do not have a pronounced effect on detection success of fragments and only underscore the restriction on the use of FAFLPs for measuring species presence rather than their abundance. However, for two of the regions tested-the trnT-trnL intergenic spacer and the trnL intron-size-based fragment competition occurred and the likelihood of detection was higher for smaller than larger fragments. This result reveals a methodological bias when using FAFLPs. CONCLUSIONS: To avoid potential bias with the use of FAFLPs, we recommend users check for the disproportionate absence of species detected belowground versus aboveground as a function of fragment size, and explore other regions, aside from the trnT-trnL intergenic spacer and trnL intron, for amplification.