Hantavirus Expansion Trends in Natural Host Populations in Brazil.

Hantaviruses are zoonotic agents responsible for causing Hantavirus Cardiopulmonary Syndrome (HCPS) in the Americas, with Brazil ranking first in number of confirmed HCPS cases in South America. In this study, we simulate the monthly spread of highly lethal hantavirus in natural hosts by conjugating a Kermack-McCormick SIR model with a cellular automata model (CA), therefore simultaneously evaluating both in-cell and between-cell infection dynamics in host populations, using recently compiled data on main host species abundances and confirmed deaths by hantavirus infection. For both host species, our models predict an increase in the area of infection, with 22 municipalities where no cases have been confirmed to date expected to have at least one case in the next decade, and a reduction in infection in 11 municipalities. Our findings support existing research and reveal new areas where hantavirus is likely to spread within recognized epicenters. Highlighting spatial-temporal trends and potential expansion, we emphasize the increased risk due to pervasive habitat fragmentation and agricultural expansion. Consistent prevention efforts and One Health actions are crucial, especially in newly identified high-risk municipalities.

Orthohantavirus genotype Lechiguanas in Oligoryzomys nigripes (Rodentia: Cricetidae): New evidence of host-switching.

To identify and predict situations of increased risk of orthohantavirus infection in humans, it is necessary to study the relationships between the virus and its rodent hosts. The present study investigated orthohantavirus infection in an assemblage of wild Sigmodontinae rodents of the Paraná Delta, Argentina, and providing new evidence of host-switching events. Rodents belonging to the species Oxymycterus rufus (n = 187), Akodon azarae (n = 82), Oligoryzomys flavescens (n = 80), Oligoryzomys nigripes (n = 47), Scapteromys aquaticus (n = 38), Deltamys kempi (n = 7) and Holochilus brasiliensis (n = 2) were captured at 4 sampling sites during 20 trapping sessions. Blood samples were analyzed by IgG ELISA and livers by a nested reverse transcription PCR for the diagnosis of orthohantavirus infection. The amplified products of the S and M orthohantavirus genomes were sequenced and analyzed to determine similarities with species of the Orthohantavirus genus. The species of the Oligoryzomys positive to the virus were confirmed by amplifying and sequencing the complete cyt b gene. Of the 443 serum samples analyzed by IgG ELISA, A. azarae presented the highest host-specific prevalence value (10/82, 12.2%) followed by Ol. nigripes (4/47, 8.5%) and Ox. rufus (1/187, 0.5%). All the sero-positive Ol. nigripes (n = 4) were positive to the amplification of the S and M segments of the Lechiguanas genotype (98% nucleotide identity for both segments). This is surprising given that Ol. nigripes has been previously associated with Juquitiba genotype, not Lechiguanas. The latter is generally associated with Ol. flavescens, which in our study were all sero-negative. In addition, the association Ox. rufus - Pergamino genotype found here is, to our knowledge, novel and another potential evidence of host-switching considering that Pergamino has been originally associated with A. azarae. These findings contribute to the building evidence that contradicts the one-genotype-one-reservoir species premise in the association between rodent reservoirs and orthohantaviruses, and supports the hypothesis that the community structure of sympatric host species may contribute to orthohantavirus dynamics.

Pequenos mamíferos não-voadores (Didelphimorphia, Rodentia) em dois fragmentos de mata de restinga de Rio Grande, planície costeira do Rio Grande do Sul / Non-volant small mammals ((Didelphimorphia, Rodentia) in two forest fragments in Rio Grande, Rio Grande do Sul coastal plain, Brazil

As matas de restinga representam formações vegetais originais na Planície Costeira do estado do Rio Grande do Sul. O objetivo deste trabalho foi avaliar a composição de espécies de pequenos mamíferos não-voadores em dois fragmentos de matas de restinga (mata palustre e mata arenosa ciliar) no município de Rio Grande, região sul da Planície Costeira do Rio Grande do Sul. Um total de 234 indivíduos pertencentes a três espécies de marsupiais (Didelphidae: Cryptonanus guahybae, Didelphis albiventris, Lutreolina crassicaudata) e oito espécies de roedores (Cricetidae: Deltamys kempi, Holochilus brasiliensis, Oligoryzomys flavescens, O. nigripes, Oxymycterus nasutus, Scapteromys tumidus; Muridae: Mus musculus, Rattus rattus) foi capturado. As espécies C. guahybae, D. albiventris, D. kempi, H. brasiliensis, O. nigripes, S. tumidus e M. musculus foram registradas no fragmento de mata palustre, enquanto que C. guahybae, D. albiventris, Lutreolina crassicaudata, D. kempi, O. flavescens, O. nigripes, S. tumidus e R. rattus ocorreram no fragmento de mata arenosa ciliar. Oligoryzomys nigripes e S. tumidus foram as espécies mais abundantes no fragmento de mata palustre, representando respectivamente 40,4 e 22,1% do total de indivíduos capturados. No fragmento de mata arenosa ciliar, as espécies mais abundantes foram O. nigripes e D. albiventris, representando respectivamente 63,4 e 12,4% do total de indivíduos capturados. Indivíduos de C. guahybae e O. nigripes foram capturados em estrato arbóreo (alturas entre 0,50 e 1,65 m) enquanto que todos os indivíduos das demais espécies foram capturados no solo.

The restinga forests represent original vegetal formations in Coastal Plain of Rio Grande do Sul state. This work aimed to evaluate the species composition of non-volant small mammals in two restinga forests (peat forest and sandy riparian forest) in Rio Grande, Southern Rio Grande do Sul Coastal Plain. A total of 234 individuals belonging to three species of marsupials (Didelphidae: Cryptonanus guahybae, Didelphis albiventris, Lutreolina crassicaudata) and eight species of rodents (Cricetidae: Deltamys kempi, Holochilus brasiliensis, Oligoryzomys flavescens, O. nigripes, Oxymycterus nasutus, Scapteromys tumidus; Muridae: Mus musculus, Rattus rattus) was captured. The species C. guahybae, D. albiventris, D. kempi, H. brasiliensis, O. nigripes, S. tumidus and M. musculus were recorded in the peat forest while C. guahybae, D. albiventris, Lutreolina crassicaudata, D. kempi, O. flavescens, O. nigripes, S. tumidus and R. rattus occurred in the riparian sandy forest. Oligoryzomys nigripes and S. tumidus were the most abundant species in the peat forest, representing 40.4 and 22.1% of the total of captured individuals, respectively. The most abundant species in the riparian sandy forest were O. nigripes e D. albiventris, representing 63.4 and 12.4% of the total of captured individuals. Individuals of C. guahybae and O. nigripes were captured on trees (heights between 0.50 and 1.65 m) while all individuals of the remaining species were captured on the ground.

Genetic structure of sigmodontine rodents (Cricetidae) along an altitudinal gradient of the Atlantic Rain Forest in southern Brazil.

The population genetic structure of two sympatric species of sigmodontine rodents (Oligoryzomys nigripes and Euryoryzomys russatus) was examined for mitochondrial DNA (mtDNA) sequence haplotypes of the control region. Samples were taken from three localities in the Atlantic Rain Forest in southern Brazil, along an altitudinal gradient with different types of habitat. In both species there was no genetic structure throughout their distribution, although levels of genetic variability and gene flow were high.

Genetic structure of sigmodontine rodents (Cricetidae) along an altitudinal gradient of the Atlantic Rain Forest in southern Brazil

The population genetic structure of two sympatric species of sigmodontine rodents (Oligoryzomys nigripes and Euryoryzomys russatus) was examined for mitochondrial DNA (mtDNA) sequence haplotypes of the control region. Samples were taken from three localities in the Atlantic Rain Forest in southern Brazil, along an altitudinal gradient with different types of habitat. In both species there was no genetic structure throughout their distribution, although levels of genetic variability and gene flow were high.

Identificação das espécies de roedores reservatórios de hantavírus no sul e sudeste brasileiro: (Nota Prévia) / Identification of hantavirus rodent reservoirs species in south and southeastern Brazil: (Previous Note)

BACKGROUNS: Hantavirus is a genus belonging to the Bunyaviridae family. Human infection occurs mainly by inhalation of aerosols formed from wild rodent droppings. The objectives of this study were to identify the species of rodent reservoirs of hantavirus that cause the cardiopulmonary syndrome in the southern and southeastern regions of Brazil; to understand the eco-epidemiology of this virus and the wild rodents' systematics. MATERIAL AND METHODS: Rodents were captured using Sherman traps distributed throughout natural environments and around human settlements in localities were hantavirus cardiopulmonary syndrome was detected. After species identification, biometric measures were taken of each animal. Samples of blood, liver, kidney, spleen, heart and lung were preserved in liquid nitrogen and sent to the laboratory. Blood samples were tested for IgG antibodies for hantavirus using an enzyme-linked immunosorbent assay (ELISA). Voucher specimens are available at the Instituto Adolfo Lutz collection. RESULTS: A total of 4,069 rodents, belonging to 22 species, were captured. From these rodents, 201 had IgG antibodies for hantavirus. The number of positive specimens per number of captured rodents according to the natural environments studied is the following: a) Mainland: Bolomys lasiurus (130/1187), Oximicterus ruttilans (1/6), Thalpomys lasiotis (0/2), Oligoryzomys stramineus (0/1), Oryzomys nitidus (0/24), Pseudoryzomys simplex (0/14), Calomys tener (22/910), Calomys callosus (2/107); b) Atlantic rainforest: Bolomys sp (1/51), Brucepattersonius soricinus (0/16), Oximicterus quaestor (0/15), Thaptomys nigrita (1/59), Delomys dorsalis (0/1), Delomys sublineatus (0/4) Oligoryzomys delticola (0/5), Oryzomys capito (0/3), Oryzomys ratticeps (0/7), Calomys laucha (0/26); c) Both habitats: Akodon sp (14/910), Oligoryzomys nigripes (28/360), Rattus rattus (0/9), Mus musculus (2/352). Oligoryzomys nigripes was more frequent in the Atlantic rainforest. Bolomys lasiurus showed the highest capture index (44%) and the highest antibody prevalence among mainland species (10.9%). In the Atlantic rainforest, Akodon sp was the most captured species (45,4%) and Oligoryzomys nigripes showed the highest antibody prevalence (7,8%). CONCLUSIONS:Antibody prevalence indicates Bolomys lasiurus as the reservoir of hantavírus in the mainland regions of São Paulo and Minas Gerais and Oligoryzomys nigripes in the Atlantic rainforest of São Paulo, Rio Grande do Sul, Paraná and Santa Catarina. Species belonging to the genus Akodon and Calomys showed lower prevalence, and complementary studies are needed to clarify their role in hantavirus epidemiology.

DELINEAMENTO DO PROBLEMA: Os hantavirus formam um gênero da família Bunyaviridae . A infecção humana ocorre, principalmente, pela inalação de aerossóis formados a partir de excretas de roedores silvestres infectados. Os objetivos deste trabalho foram identificar as espécies de roedores reservatórios de hantavírus causadores de síndrome cardiopulmonar nas regiões Sul e Sudeste do Brasil; e compreender a ecoepidemiologia desses vírus e a sistemática de roedores silvestres. MATERIAL E MÉTODOS: Em locais onde ocorreram casos de síndrome cardiopulmonar por hantavírus, foram realizadas capturas de roedores silvestres com auxílio de armadilhas tipo Sherman, distribuídas nos diversos biomas e ambientes domiciliares, peridomiciliares e silvestres. Após identificação sistemática da espécie, medidas biométricas foram tomadas de cada animal. Amostras de sangue, fígado, rim, baço, coração e pulmão foram conservadas em nitrogênio líquido e levadas para o laboratório. O sangue foi testado pela técnica imunoenzimática (ELISA) para detecção de anticorpos IgG para hantavírus. As carcaças dos roedores foram depositadas na coleção do Instituto Adolfo Lutz. RESULTADOS: Foram capturados 4.069 roedores, de 22 espécies. Desses, 201 roedores apresentaram anticorpos IgG para hantavírus. As espécies e os respectivos números de roedores positivos por capturados, de acordo com os biomas estudados foram: a) cerrado: Bolomys lasiurus (130/1187), Oximicterus ruttilans (1/6), Thalpomys lasiotis (0/2), Oligoryzomys stramineus (0/1), Oryzomys nitidus (0/24), Pseudoryzomys simplex (0/14), Calomys tener (22/910), Calomys callosus (2/107), b) Mata Atlântica: Bolomys sp (1/51), Brucepattersonius soricinus (0/16), Oximicterus quaestor (0/15), Thaptomys nigrita (1/59), Delomys dorsalis (0/1), Delomys sublineatus (0/4) Oligoryzomys delticola (0/5), Oryzomys capito (0/3), Oryzomys ratticeps (0/7), Calomys laucha (0/ 26); c) nos dois biomas: Akodon sp (14/910), Oligoryzomys nigripes (28/360), Rattus rattus (0/9), Mus musculus (2/352). Oligoryzomys nigripes foi consideravelmente mais freqüente na mata atlântica. Bolomys lasiurus apresentou maior índice de captura (44%) e de prevalência de anticorpos entre espécies de cerrado (11%), enquanto na mata atlântica, Akodon sp foi a mais capturada (45%) e Oligoryzomys nigripes apresentou maior soropositividade (8%). CONCLUSÕES: Baseando-se na prevalência de anticorpos, Bolomys lasiurus foi identificado como reservatório de hantavírus nas regiões de cerrado de São Paulo e Minas Gerais e Oligoryzomys nigripes nas regiões de mata atlântica de São Paulo, Rio Grande do Sul, Paraná e Santa Catarina. Espécies do gênero Akodon e Calomys mostraram baixas soroprevalências e requerem novos estudos para esclarecer seu papel na epidemiologia do hantavírus.