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FEBS Lett ; 598(11): 1422-1437, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38649293

RESUMEN

Among the epimerases specific to alginate, some of them in Azotobacter genera convert ß-d-mannuronic acid to α-l-guluronic acid but also have lyase activity to degrade alginate. The remarkable characteristics of these epimerases make it a promising enzyme for tailoring alginates to meet specific demands. Here, we determined the structure of the bifunctional mannuronan C-5 epimerase AlgE3 from Azotobacter chroococcum (AcAlgE3) in complex with several mannuronic acid oligomers as well as in apo form, which allowed us to elucidate the binding manner of each mannuronic acid oligomer, and the structural plasticity, which is dependent on calcium ions. Moreover, a comprehensive analysis of the lyase activity profiles of AcAlgE3 combined with structural characteristics explained the preference for different chain length oligomers.


Asunto(s)
Alginatos , Azotobacter , Carbohidrato Epimerasas , Azotobacter/enzimología , Azotobacter/metabolismo , Alginatos/química , Alginatos/metabolismo , Carbohidrato Epimerasas/química , Carbohidrato Epimerasas/metabolismo , Carbohidrato Epimerasas/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/genética , Ácidos Hexurónicos/química , Ácidos Hexurónicos/metabolismo , Especificidad por Sustrato , Calcio/metabolismo , Calcio/química , Modelos Moleculares , Cristalografía por Rayos X , Unión Proteica , Dominio Catalítico
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