The complete mitochondrial genome of the Mexican-endemic cavefish Ophisternoninfernale (Synbranchiformes, Synbranchidae): insights on patterns of selection and implications for synbranchiform phylogenetics.

Ophisternoninfernale is one of the 200+ troglobitic fish species worldwide, and one of the two cave-dwelling fishes endemic to the karstic aquifer of the Yucatán Peninsula, Mexico. Because of its elusive nature and the relative inaccessibility of its habitat, there is virtually no genetic information on this enigmatic fish. Herein we report the complete mitochondrial genome of O.infernale, which overall exhibits a configuration comparable to that of other synbranchiforms as well as of more distantly related teleosts. The KA/KS ratio indicates that most mtDNA PCGs in synbranchiforms have evolved under strong purifying selection, preventing major structural and functional protein changes. The few instances of PCGs under positive selection might be related to adaptation to decreased oxygen availability. Phylogenetic analysis of mtDNA comparative data from synbranchiforms and closely related taxa (including the indostomid Indostomusparadoxus) corroborate the notion that indostomids are more closely related to synbranchiforms than to gasterosteoids, but without rendering the former paraphyletic. Our phylogenetic results also suggest that New World species of Ophisternon might be more closely related to Synbranchus than to the remaining Ophisternon species. This novel phylogenetic hypothesis, however, should be further tested in the context of a comprehensive systematic study of the group.

Sources and distribution of organic matter along the Ring of Cenotes, Yucatan, Mexico: sterol markers and statistical approaches.

The Yucatan Peninsula is a large low lying platform of limestone, dolomite and evaporite deposits, forming an extensive and mature karst aquifer with many sinkholes locally called cenotes. In Yucatan, the only source of drinking water is groundwater and its quality could be impaired by: (i) infiltration of contaminants and (ii) saltwater intrusion. To investigate the sources of organic matter in this aquifer, sediment samples (46) were collected from cenotes and analysed using gas chromatography-mass spectrometry. Sterol analysis, coupled with principal component analysis (PCA), allowed us to distinguish three sources of natural organic matter (e.g. marine, autotrophic and terrigenous) and to detect an anthropogenic input (e.g. fecal contamination). Good consistency was observed between the source assignment and the land use context (forest, agricultural, rural or urban areas) and the season, except for some of the samples where a direct correlation could not be made. The latter cases are most likely a result of the karstic character of the system.

Simulation of Regional Karst Aquifer System and Assessment of Groundwater Resources in Manatí-Vega Baja, Puerto Rico.

The North Coast karst aquifer system of Puerto Rico, the most productive aquifer of the island, is a vital water source for drinking water and local ecosystems. High freshwater demands alter the coastal groundwater system that impacts both human populations and coastal ecosystems of the island. To predict how this system might respond to rainfall events and high pumping demands, we used the equivalent porous medium (EPM) technique to develop a three-dimensional ground-water flow model to estimate hydrogeological parameters and assess groundwater resources in the Manatí-Vega Baja karst aquifer. The approach is based on the hypothesis that the simplified EPM approach will reproduce groundwater hydrodynamics in this complex karst environment. The steady-state model was calibrated with trial and error and parameter estimation methods using an observed groundwater table of 1995 (r = 0.86, p < 0.0001, n = 39). The large-scale simulation suggested that groundwater flow roughly follows the elevation slope [i.e. south to north). Calibrated hydraulic conductivities range from 0.5 to 86 m/d, whereas the hydro-geologic data strongly suggest higher permeability in the middle karst section of the study area. The transient model adequately estimates the observed groundwater fluctuations in response to rainfall events from 1980 until 2014. The transient results indicate that the conceptual model accuracy is more acceptable with a mean error (ME) of -0.132 m, mean absolute error (MAE) of 0.542 m and root mean square (RMSE) error of 0.365 m. The results of water budget simulation show that the total recharge satisfies the total groundwater withdrawal rate in the past, but continuous closure of more contaminated wells causes groundwater levels to increase in the future. The results indicate that the assumption of applicability of EPM approach is sustained and supported by measured data in the study area. Taking future water demands into account, this model could be applied further to predict the changes of groundwater levels and mass balance under different exploitation scenarios.