Whole-genome sequencing and functional annotation of pathogenic Paraconiothyrium brasiliense causing human cellulitis.

BACKGROUND: A pathogenic filamentous fungus causing eyelid cellulitis was isolated from the secretion from a patient's left eyelid, and a phylogenetic analysis based on the rDNA internal transcribed spacer region (ITS) and single-copy gene families identified the isolated strain as Paraconiothyrium brasiliense. The genus Paraconiothyrium contains the major plant pathogenic fungi, and in our study, P. brasiliense was identified for the first time as causing human infection. To comprehensively analyze the pathogenicity, and proteomics of the isolated strain from a genetic perspective, whole-genome sequencing was performed with the Illumina NovaSeq and Oxford Nanopore Technologies platforms, and a bioinformatics analysis was performed with BLAST against genome sequences in various publicly available databases. RESULTS: The genome of P. brasiliense GGX 413 is 39.49 Mb in length, with a 51.2% GC content, and encodes 13,057 protein-coding genes and 181 noncoding RNAs. Functional annotation showed that 592 genes encode virulence factors that are involved in human disease, including 61 lethal virulence factors and 30 hypervirulence factors. Fifty-four of these 592 virulence genes are related to carbohydrate-active enzymes, including 46 genes encoding secretory CAZymes, and 119 associated with peptidases, including 70 genes encoding secretory peptidases, and 27 are involved in secondary metabolite synthesis, including four that are associated with terpenoid metabolism. CONCLUSIONS: This study establishes the genomic resources of P. brasiliense and provides a theoretical basis for future studies of the pathogenic mechanism of its infection of humans, the treatment of the diseases caused, and related research.

Metabolic Adaptation of Paracoccidioides brasiliensis in Response to in vitro Copper Deprivation.

Copper is an essential micronutrient for the performance of important biochemical processes such as respiration detoxification, and uptake of metals like iron. Studies have shown that copper deprivation is a strategy used by the host against pathogenic fungi such as Cryptoccocus neoformans and Candida albicans during growth and development of infections in the lungs and kidneys. Although there are some studies, little is known about the impact of copper deprivation in members of the Paracoccidioides genus. Therefore, using isobaric tag labeling (iTRAQ)-Based proteomic approach and LC-MS/MS, we analyzed the impact of in vitro copper deprivation in the metabolism of Paracoccidioides brasiliensis. One hundred and sixty-four (164) differentially abundant proteins were identified when yeast cells were deprived of copper, which affected cellular respiration and detoxification processes. Changes in cellular metabolism such as increased beta oxidation and cell wall remodeling were described.

Antifungal activity of silver salts of Keggin-type heteropolyacids against Sporothrix spp.

Sporotrichosis is a chronic and subacute mycosis causing epidemiological outbreaks involving sick cats and humans in southeastern Brazil. The systemic disease prevails in cats, and in humans, the symptoms are restricted to skin in immunocompetent individuals. Under these conditions, the prolonged treatment of animals and cases of recurrence justify the discovery of new treatments for sporotrichosis. This work addresses the antifungal activity of silver salts of Keggin-type heteropolyacid salts (Ag-HPA salts) such as Ag3[PW12O40], Ag6[SiW10V2O40], Ag4[SiW12O40] and Ag3[PMo12O40] and interactions with the antifungal drugs itraconazole (ITC), terbinafine (TBF) and amphotericin B (AMB) on the yeast and mycelia forms of Sporothrix spp. Sporothrix spp. yeast cells were susceptible to Ag-HPA salts at minimum inhibitory concentration (MIC) values ranging from 8 to 128 µg/mL. Interactions between Ag3[PW12O40] and Ag3[PMo12O40] with itraconazole and amphotericin B resulted in higher antifungal activity with a reduction in growth and melanization. Treated cells showed changes in cell membrane integrity, vacuolization, cytoplasm disorder, and membrane detachment. Promising antifungal activity for treating sporotrichosis was observed for the Ag-HPA salts Ag3[PMo12O40] and Ag3[PW12O40], which have a low cost, high yield and activity at low concentrations. However, further evaluation of in vivo tests is still required.

Effects of the fungus Pestalotiopsis maculans (Ascomycota: Amphisphaeriales) on the gametophytic development of the fern Lygodium venustum (Lygodiaceae)

Lygodium Sw. is the only genus of the family Lygodiaceae, with around 25 to 40 species inhabiting mostly tropical regions worldwide. In Argentina two species develop; one of them, L. venustum, grows in the Northeast of the country. Some species of Lygodium are invasive whereas medicinal uses have been reported for some taxa. As part of a project to ascertain on the reproductive biology of native ferns in Argentina, a fungus was found during in vitro spore culture of L. venustum. Dark brown spots and eruptive pustules were also observed in fertile leaves. Thus, emerged as objectives of this work: 1) to retrieve and identify the fungus from the sporophyte and from the spores cultures, 2) to inquire on the impact of the fungus on gametophyte generation, and 3) to perform experiments with untreated spores to demonstrate that the fungus is associated to the spores collected from infested sporophytes. Phytopathological techniques were applied in order to isolate the fungus and then to achieve monosporic cultures. The morpho-biometric features of the conidia corresponded with those of Pestalotiopsis maculans (Corda) Nag Raj [= Pestalotiopsis guepinii (Desm.) Steyaert] (Amphisphaeriales, Ascomycota). Re-inoculation of conidia on healthy gametophytes conducted to their necrosis and death. The percentages of spore germination were initially higher in unsterilized cultures, suggesting that disinfection protocol may have affected spore germination. This is the first report of Pestalotiopsis maculans on the sporophytes of Lygodium venustum. The information that emerges from our work could be useful for the biocontrol of other species of Lygodium, considered weeds in other regions of the world.

Efectos del hongo Pestalotiopsis maculans (Ascomycota: Amphisphaeriales) en el desarrollo gametofítico del helecho Lygodium venustum (Lygodiaceae). Lygodium Sw. es el único género de la familia Lygodiaceae, con alrededor de 25 a 40 especies que habitan en su mayoría en regiones tropicales del mundo. En Argentina se desarrollan dos especies; uno de ellas, L. venustum, crece en el noreste del país. Algunas especies de Lygodium son invasivas, mientras que para algunos taxones se han reportado usos medicinales. Como parte de un proyecto para indagar sobre la biología reproductiva de los helechos nativos en Argentina, se encontró un hongo durante el cultivo in vitro de esporas de L. venustum. Asimismo, se observaron manchas marrones oscuras y pústulas eruptivas en hojas fértiles. Así, surgieron como objetivos de este trabajo: 1) recuperar e identificar el hongo presente en el esporofito y en los cultivos de esporas, 2) investigar el impacto del hongo en la generación gametofítica y 3) realizar experimentos con esporas no tratadas para demostrar que el hongo está asociado a las esporas recolectadas de esporofitos infestados. Se aplicaron técnicas fitopatológicas para aislar el hongo y luego lograr cultivos monospóricos. Las características morfo-biométricas de los conidios correspondieron a las de Pestalotiopsis maculans (Corda) Nag Raj [= Pestalotiopsis guepinii (Desm.) Steyaert] (Amphisphaeriales, Ascomycota). La re-inoculación de conidios en gametofitos sanos condujo a su necrosis y muerte. Los porcentajes de germinación de esporas fueron inicialmente más altos en los cultivos no esterilizados, lo que sugiere que el protocolo de desinfección pudo haber afectado la germinación de las esporas. Este es el primer reporte de Pestalotiopsis maculans sobre los esporofitos de Lygodium venustum. La información que surge de nuestro trabajo podría ser útil para el control biológico de otras especies de Lygodium, consideradas malezas en otras regiones del mundo.

Species of the Colletotrichum acutatum complex associated with anthracnose diseases of fruit in Brazil.

Although Colletotrichum acutatum was recently investigated and shown to be a species complex comprising about 30 species, the name is still used in its broad sense for anthracnose pathogens of fruits in Brazil. In this study, a multilocus molecular analysis was carried out based on a dataset of ITS, HIS3, GAPDH, CHS-1, TUB2 and ACT sequences of Colletotrichum strains belonging to the C. acutatum species complex from fruits collected in different regions in Brazil combined with sequences of ex-type and other reference strains of species belonging to this complex. The strains were revealed to belong to Colletotrichum nymphaeae, Colletotrichum melonis, Colletotrichum abscissum and one new species, namely Colletotrichum paranaense, from apple and peach. Morphological descriptions of the new species and a strain closely related to but diverging from C. melonis are provided. From the data presently available, the most common species on apple fruits in Brazil is C. nymphaeae. In a pathogenicity test, strains of all four species caused lesions on detached apple, peach and guava fruits, except for strain CBS 134730 that did not infect guava fruits.

Data in support of quantitative proteomics to identify potential virulence regulators in Paracoccidioides brasiliensis isolates.

Paracoccidioides genus are the etiologic agents of paracoccidioidomycosis (PCM), a systemic mycosis endemic in Latin America. Few virulence factors have been identified in these fungi. This paper describes support data from the quantitative proteomics of Paracoccidioides brasiliensis attenuated and virulent isolates [1]. The protein compositions of two isolates of the Pb18 strain showing distinct infection profiles were quantitatively assessed by stable isotopic dimethyl labeling and proteomic analysis. The mass spectrometry and the analysis dataset have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with identifier PXD000804.

PCR-RFLP as a useful tool for diagnosis of invasive mycoses in a healthcare facility in the North of Brazil

Background The incidence of invasive mycoses is increasing worldwide. PCR-RFLP was applied to the identification of 10 reference strains and 90 cultures of agents of invasive mycoses. In addition, the new approach was applied to detect fungal agents in 120 biological samples (blood, cerebrospinal fluid and bone marrow). PCR-RFLP results were compared with the ones obtained with conventional methods (culture, microscopy, and biochemical testing). Results The assays carried out with the reference strains (Candida albicans, Candida parapsilosis, Candida tropicalis, Candida krusei, Candida guilliermondii, Cryptococcus neoformans, Cryptococcus gattii and Histoplasma capsulatum), demonstrated that the RFLP profiles were correctly predicted by the in silico investigation and allowed unequivocal identification of all chosen reference strains. The PCR-RFLP also identified 90 cultures of agents of invasive mycoses correctly, 2.5 times faster than the conventional assays. Evaluating PCR-RFLP with biological samples it was observed that the PCR was found to be 100% accurate and the RFLP profiles allowed the identification of the etiological agents: C. neoformans (n = 3) and C. gattii (n = 1) in CSF samples, H. capsulatum (n = 1) in bone marrow and C. albicans (n = 2) in blood cultures. The detection and identification by PCR-RFLP were found to be between two to ten times faster than the conventional assays. Conclusion The results showed that PCR-RFLP is a valuable tool for the identification of invasive mycoses that can be implemented in hospital laboratories, allowing for a high number of clinical analyses per day.

Characterization of Lipids and Proteins Associated to the Cell Wall of the Acapsular Mutant Cryptococcus neoformans Cap 67.

Cryptococcus neoformans is an opportunistic human pathogen that causes life-threatening meningitis. In this fungus, the cell wall is exceptionally not the outermost structure due to the presence of a surrounding polysaccharide capsule, which has been highly studied. Considering that there is little information about C. neoformans cell wall composition, we aimed at describing proteins and lipids extractable from this organelle, using as model the acapsular mutant C. neoformans cap 67. Purified cell wall preparations were extracted with either chloroform/methanol or hot sodium dodecyl sulfate. Total lipids fractionated in silica gel 60 were analyzed by electrospray ionization tandem mass spectrometry (ESI-MS/MS), while trypsin digested proteins were analyzed by liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS). We detected 25 phospholipid species among phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidylinositol, and phosphatidic acid. Two glycolipid species were identified as monohexosyl ceramides. We identified 192 noncovalently linked proteins belonging to different metabolic processes. Most proteins were classified as secretory, mainly via nonclassical mechanisms, suggesting a role for extracellular vesicles (EV) in transwall transportation. In concert with that, orthologs from 86% of these proteins have previously been reported both in fungal cell wall and/or in EV. The possible role of the presently described structures in fungal-host relationship is discussed.

Exploring potential virulence regulators in Paracoccidioides brasiliensis isolates of varying virulence through quantitative proteomics.

Few virulence factors have been identified for Paracoccidioides brasiliensis, the agent of paracoccidioidomycosis. In this study, we quantitatively evaluated the protein composition of P. brasiliensis in the yeast phase using minimal and rich media to obtain a better understanding of its virulence and to gain new insights into pathogen adaptation strategies. This analysis was performed on two isolates of the Pb18 strain showing distinct infection profiles in B10.A mice. Using liquid chromatography/tandem mass spectrometry (LC-MS/MS) analysis, we identified and quantified 316 proteins in minimal medium, 29 of which were overexpressed in virulent Pb18. In rich medium, 29 out of 295 proteins were overexpressed in the virulent fungus. Three proteins were found to be up-regulated in both media, suggesting the potential roles of these proteins in virulence regulation in P. brasiliensis. Moreover, genes up-regulated in virulent Pb18 showed an increase in its expression after the recovery of virulence of attenuated Pb18. Proteins up-regulated in both isolates were grouped according to their functional categories. Virulent Pb18 undergoes metabolic reorganization and increased expression of proteins involved in fermentative respiration. This approach allowed us to identify potential virulence regulators and provided a foundation for achieving a molecular understanding of how Paracoccidioides modulates the host-pathogen interaction to its advantage.

Efeito de Secreções da Glândula Mandibular de Atta sexdens rubropilosa Forel (Hymenoptera: Formicidae) Sobre a Germinação de Conídios de Botrytis cinerea Pers. Fr. / Inhibition of the Germination of Botrytis cinerea Pers. Fr. Conidia by Extracts of the Mandibular Gland of Atta sexdens rubropilosa Forel (Hymenoptera: Formicidae)

This research investigated the effect of mandibular gland secretions of Atta sexdens rubropilosa Forel on the germination of Botrytis cinerea Pers. Fr. conidia. This fungus attacks several species of cultivated plants of economic importance. From 20 mandibular glands of workers of the leaf-cutting ant (3.60-4.30 mm head capsule width) we obtained 9.4 mg of acetone soluble secretion. To this mass, sterile water and the dispersing agent Tween 20 were added to prepare four doses which composed the treatments of 0.94 mg/ml, 4.70 mg/ml, 9.40 mg/ml and 37.60 mg/ml. We also used a negative control (water), a solvent control (acetone) and a positive control (the Mancozeb fungicide at 1600 ppm). Five microliters of B. cinerea conidia suspension were added to excavated plates maintained at 20°C in the dark. Therefore the solution concentrations of the treatments were reduced to half, that is 0.47 mg/ml, 2.35 mg/ml, 4.70 mg/ml and 18.80 mg/ml. A total of 12 replicates were performed for each of four treatments. The percentage of conidia germination was obtained 8h after treatments. Results by Probit analysis of data indicated that higher gland concentrations led to higher inhibition of conidia germination. The concentration of 18.80 mg/ml had an inhibitory effect (94.2 percent) similar to that of Mancozeb (95.3 percent).

Estudou-se o efeito de secreções da glândula mandibular de Atta sexdens rubropilosa Forel (Hymenoptera: Formicidae) sobre a germinação de conídios de Botrytis cinerea Pers. Fr., fungo fitopatogênico de várias plantas de importância econômica. De 20 glândulas mandibulares de operárias dessa formiga cortadeira, com cápsula cefálica entre 3,60 e 4,30 mm, obtiveram-se 9,40 mg de secreção, aos quais adicionaram-se 0,25 ml de água esterilizada, resultando em uma solução de concentração 37,60 mg/ml. Essa mistura foi utilizada para o preparo de soluções com diferentes concentrações de secreção (0,94 mg/ml, 4,70 mg/ml e 9,40 mg/ml). Foram também preparadas uma testemunha negativa (água), uma testemunha de acetona e outra positiva, o fungicida Mancozeb a 1600 ppm. A cada 5 ml de solução dos tratamentos, foram adicionados 5 ml de suspensão de conídios de B. cinerea em lâminas escavadas, as quais foram mantidas a 20°C, no escuro. Portanto as concentrações das soluções dos tratamentos foram reduzidas à metade, ou seja, 0,47 mg/ml, 2,35 mg/ml, 4,70 mg/ml e 18,80 mg/ml. Após 8h, determinou-se a porcentagem de germinação de conídios desse fungo. Os experimentos foram realizados em 12 repetições. A análise de Probit indicou que quanto maior a concentração das soluções, maior foi o efeito inibitório sobre a germinação de conídios de B. cinerea. A solução de concentração 18,80 mg/ml mostrou efeito inibitório de (94,2 por cento) semelhante ao do fungicida Mancozeb (95,3 por cento).