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The US Virgin Islands (USVI) include St. John and St. Thomas on the Puerto Rican Platform (PRP) and St. Croix, isolated by 2000 m deep water 45 km south of that platform. Previous inventories of the marine fishes of these islands include a comprehensive 2014 checklist of the fishes of St. Croix and a list of the fishes of the PRP produced in 2000. The latter list noted the locations of many records of the plateau's fishes, allowing the construction of a combined inventory for St. John and St. Thomas. Those two islands are treated here as a single faunal unit because they are only 3.5 km apart on a shared shallow shelf with various islets and reefs in between. Here we provide updated information on those two USVI (St. Croix and St. John-Thomas) marine fish faunas. The additions to the St. Croix and St. John-Thomas inventories presented here are based on a combination of information from the two sources indicated above, more recent publications dealing with those faunas, a review of location records on various online sources of biogeographic data, and voucher photographs taken of fishes in the field by authors of this paper and other citizen scientists. This assessment increased the known fauna of St. Croix by 7.5% to 585 species. The inventory for St. John-Thomas increased by 39.9% from 401 species on the 2000 PRP list to 561 with the inclusion of records from other sources. On-site mtDNA (COI) barcodes are available for approximately one-third of the species of the St. John-Thomas fauna, but for only one species collected at St. Croix. A set of underwater photographs of 372 species (34 of them representing the sole record of a species) from St. John-Thomas and of 11 shallow-water species added to the St. Croix fauna is included. These represent occurrence vouchers and also are intended to facilitate future work that builds on the present compendium.
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Atractus badius has a long and controversial nomenclatural history due to both its antiquity and the brevity of its original description. This species was described based on two syntypes from Java. Later, a lectotype was designated and the distribution range restricted to the Guiana Shield. Although this species has been repeatedly recorded throughout Amazonia and the Andes, these records have been erroneously assigned to A. badius because of a considerable level of confusion in the literature. We found 13 additional specimens of this poorly known snake, expanding our knowledge on its morphological variability, phylogenetic relationships and distribution. In this paper, we report new localities and data on meristic, morphometric, coloration, scales micro-ornamentation, osteology and hemipenial morphology to A. badius. We also determine the phylogenetic position of A. badius as nested in a composite Guiana Shield clade. In addition, we discuss recent advances on the systematics of Atractus and comment on some 'new arrangements' with respect to previously recognized species groups and available morphological evidence. Finally, we highlight the importance of accurate voucher identification before promoting taxonomic changes or implementing nomenclatural acts derived from new phylogenetic hypotheses, and notably propose the synonymy of the recently described A. pyroni with A. roulei.
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'We advise the authors to find a native English speaker to proofread the manuscript'. This is a standard feedback journals give to non-native English speakers. Journals are justifiably concerned with grammar but do not show the same rigour about another step crucial to biological research: specimen identification. Surveying the author guidelines of 100 journals, we found that only 6% of them request explicitly citation of the literature used in specimen identification. Authors hamper readers from contesting specimen identification whenever vouchers, identification methods, and taxon concepts are not provided. However, unclear taxonomic procedures violate the basic scientific principle of reproducibility. The scientific community must continuously look for practical alternatives to improve taxonomic identification and taxonomic verification. We argue that voucher pictures are an accessible, cheap and time-effective alternative to mitigate (not abolish) bad taxonomy by exposing preventable misidentifications. Voucher pictures allow scientists to judge specimen identification actively, based on available data. The popularization of high-quality image devices, photo-identification technologies and computer vision algorithms yield accurate scientific photo-documentation, improving taxonomic procedures. Taxonomy is timeless, transversal and essential to most scientific disciplines in biological sciences. It is time to demand rigour in taxonomic identifications.
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Reproducibilidad de los ResultadosRESUMEN
BACKGROUND Biodiversity screens and phylogenetic studies are dependent on reliable DNA sequences in public databases. Biological collections possess vouchered specimens with a traceable history. Therefore, DNA sequencing of samples available at institutional collections can greatly contribute to taxonomy, and studies on evolution and biodiversity. METHODS We sequenced part of the glycosomal glyceraldehyde phosphate dehydrogenase (gGAPDH) and the SSU rRNA (V7/V8) genes from 102 trypanosomatid cultures, which are available on request at www.colprot.fiocruz.br. OBJECTIVE The main objective of this work was to use phylogenetic inferences, using the obtained DNA sequences and those from representatives of all Trypanosomatidae genera, to generate phylogenetic trees that can simplify new isolates screenings. FINDINGS A DNA sequence is provided for the first time for several isolates, the phylogenetic analysis allowed the classification or reclassification of several specimens, identification of candidates for new genera and species, as well as the taxonomic validation of several deposits. MAIN CONCLUSIONS This survey aimed at presenting a list of validated species and their associated DNA sequences combined with a short historical overview of each isolate, which can support taxonomic and biodiversity research and promote culture collections.
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Trypanosomatina/clasificación , Trypanosomatina/genética , Biodiversidad , Código de Barras del ADN Taxonómico , FilogeniaRESUMEN
ANTECEDENTES Y OBJETIVO Un bono de impacto social es un mecanismo de financiamiento innovador en que los gobiernos establecen contratos con proveedores de servicios sociales, tal como empresas sociales u organizaciones sin fines de lucro, y con inversionistas, para pagar por el logro exitoso de determinados resultados del ámbito social. Debido a esto la División de Cooperación Público-Privada del Ministerio de Desarrollo Social de Chile solicita esta síntesis de evidencia con el objetivo de sintetizar la información sobre los efectos de la implementación de los bonos de impacto social en el mundo, y de esta manera informar a la toma de decisiones. METODOLOGÍA Utilizando palabras clave como "conditional cash transfer", "social bonds", "pay for performance" y "pay for success financing", se buscó en las bases de datos Web of Science, Social System Evidence, MedLine, Embase, Scopus, HealthSystemsEvidence, HealthEvidence, Epistemonikos, la Biblioteca Cochrane, y PubMed, con el objetivo de identificar revisiones sistemáticas que abordaran la pregunta formulada. Los criterios de inclusión contemplaron mecanismos de financiamiento que incluyeran los tres actores principales de un Bono de Impacto Social: inversionista, institución privada e institución pública que ejecutará la intervención social. Se excluyeron artículos de revisiones, editoriales, comentarios, modelos matemáticos y otros que no incluyeran la evaluación del efecto de los BIS y mecanismos de pago basados en desempeño individual. RESULTADOS -No se encontró evidencia sobre el efecto de bonos de impacto social.
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Evaluación del Impacto en la Salud , Programas Sociales , Cambio Social , ChileRESUMEN
Birds harbor a diverse group of haemosporidian parasites that reproduce and develop in the host blood cells, muscle tissue, and various organs, which can cause negative effects on the survival and reproduction of their avian hosts. Characterization of the diversity, distribution, host specificity, prevalence patterns, and phylogenetic relationships of these parasites is critical to the study of avian host-parasite ecology and evolution and for understanding and preventing epidemics in wild bird populations. Here, we tested whether muscle and liver samples collected as part of standard ornithological museum expeditions can be examined to study the diversity and distributions of haemosporidians in the same way as blood collected from individual birds that are typically banded and released. We used a standard molecular diagnostic screening method for mitochondrial DNA (cytochrome b) of the parasites and found that blood, muscle, and liver collected from the same host individual provide similar estimates of prevalence and diversity of haemosporidians from the genera Parahaemoproteus and Leucocytozoon. Although we found higher prevalence for the genus Plasmodium when we screened blood vs. liver and muscle samples, the estimates of the diversity of Plasmodium from different tissue types are not affected at the community level. Given these results, we conclude that for several reasons existing museum genetic resources collections are valuable data sources for the study of haemosporidians. First, ornithological museum collections around the world house tens of thousands of vouchered tissue samples collected from remote regions of the world. Second, the host specimens are vouchered and thus host identification and phenotype are permanently documented in databased archives with a diversity of associated ancillary data. Thus, not only can identifications be confirmed but also a diversity of morphological measurements and data can be measured and accessed for these host specimens in perpetuity.
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Enfermedades de las Aves/parasitología , Haemosporida/aislamiento & purificación , Infecciones Protozoarias en Animales/parasitología , Animales , Biodiversidad , Aves , Sangre/parasitología , Haemosporida/clasificación , Hígado/parasitología , Músculos/parasitología , MuseosRESUMEN
Five years ago, the Panamanian evolutionary lineage (EL) C12 was uncovered along with four other ELs in an integrative phylogenetic investigation of worldwide Carychiidae. Since EL C12 lacked shell material post-molecular analysis to serve as a museum voucher, it remained undescribed. Now, after recent collection efforts of C12 and the congener, Carychiumzarzaae Jochum & Weigand, 2017 at their original Panamanian sites, C12 is morphologically described and formally assigned the name, Carychiumpanamaense Jochum, sp. n. In sync with recent taxonomic treatment of the genus, computed tomography (CT) is used in this work to differentiate shells of C.panamaense sp. n. from geographically-proximal, Caribbean, North and Central American congeners. Recent material of topotypic Carychiumjardineanum (Chitty, 1853) and undamaged C.zarzaae were additionally CT-scanned and assessed in the comparative analyses.
Resumen Hace cinco años, el linaje evolutivo (LE) panameño C12 fue descubierto junto con otros cuatro LEs en un estudio filogenético integrativo mundial de Carychiidae. El LE C12 permaneció sin ser descrito dado que, después de los análisis moleculares, no había conchas disponibles que sirvieran como material de referencia en museos.Ahora, después de esfuerzos recientes para colectar C12 y el congénere, Carychiumzarzaae Jochum & Weigand, 2017 en los sitios panameños originales, C12 es descrito morfológicamente y se le asigna formalmente un nombre, Carychiumpanamaense Jochum, sp. n. De acuerdo con el tratamiento taxonómico reciente del género, en este trabajo se emplea tomografía computarizada (TC) para diferenciar conchas de C.panamaense sp. n. de congéneres geográficamente cercanos del Caribe, Norte y Centro América. Además, en el análisis comparativo se escaneó con TC y se examinó material reciente del topotípico Carychiumjardineanum (Chitty, 1853) y C.zarzaae en buen estado.
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Recent recommendations for US food assistance programs are intended to ensure foods provided through these programs help households consume a varied, healthful diet. From a policy viewpoint, it is important to examine the impact of economic incentives to purchase healthy foods across subpopulations, particularly low-income Latinos, who comprise 40% of the WIC program nationwide. Our aim was to determine how rural, Mexican-heritage households (N = 227) residing in California's Central Valley distributed fruit and vegetable (F/V) voucher spending among F/V subgroups and specific items over a 1-year period. Households contained at least one child who was between 3 and 8 years old at baseline and had a parent of Mexican-heritage. F/V voucher purchase data were collected via grocery store scanners. Expenditure and frequency shares of subgroups and individual items were analyzed to determine purchasing habits. Fruits were the most commonly purchased subgroup, representing 55% of spending and 45% of frequency. Households allocated low percentages of their voucher to dark green and red/orange vegetables-7 and 9% respectively. Approximately 20% of purchases were good potassium sources and 30% of purchases were good fiber sources. Many of the most frequently purchased items were of cultural significance (tomatillo, chayote, chili/jalapeño pepper, and Mexican squash). This study suggests that economic incentives can contribute important nutrients to participants' diets and targeted vouchers provided by food assistance programs should continue to include culturally important foods and be aware of the cultural values of their participants.