RESUMEN
Hair follicle development and wool shedding in sheep are poorly understood. This study investigated the population structures and genetic differences between sheep with different wool types to identify candidate genes related to these traits. We used Illumina ovine SNP 50K chip genotyping data of 795 sheep populations comprising 27 breeds with two wool types, measuring the population differentiation index (Fst), nucleotide diversity (θπ ratio), and extended haplotype homozygosity among populations (XP-EHH) to detect the selective signatures of hair sheep and fine-wool sheep. The top 5% of the Fst and θπ ratio values, and values of XP-EHH < -2 were considered strongly selected SNP sites. Annotation showed that the PRX, SOX18, TGM3, and TCF3 genes related to hair follicle development and wool shedding were strongly selected. Our results indicated that these methods identified important genes related to hair follicle formation, epidermal differentiation, and hair follicle stem cell development, and provide a meaningful reference for further study on the molecular mechanisms of economically important traits in sheep.
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Folículo Piloso/crecimiento & desarrollo , Ovinos/genética , Lana , Animales , Análisis Mutacional de ADN/veterinaria , Estudio de Asociación del Genoma Completo/veterinaria , Técnicas de Genotipaje/veterinaria , Anotación de Secuencia Molecular , Polimorfismo de Nucleótido Simple , Análisis de Componente Principal , Ovinos/crecimiento & desarrollo , Oveja Doméstica , Especificidad de la Especie , Lana/crecimiento & desarrolloRESUMEN
Genetic polymorphisms, causing variation in casein genes (CSN1S1, CSN1S2, CSN2, and CSN3), have been extensively studied in goats and cows, but there are only few studies reported in camels. Therefore, we aimed to identify alleles with functional roles in the United Arab Emirates dromedary camel (Camelus dromedarius) population to complement previous studies conducted on the same species. Using targeted next-generation sequencing, we sequenced all genes in the casein gene cluster in 93 female camels to identify and characterize novel gene variants. Most variants were found in noncoding introns and upstream sequences, but a few variants showed the possibility of functional impact. CSN2 was found to be most polymorphic, with total 91 different variants, followed by CSN1S1, CSN3 and CSN1S2. CSN1S1, CSN1S2 and CSN2 each had at least two variants while CSN3 had only one functional allele. In future research, the functional impact of these variants should be investigated further.
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Camelus/genética , Caseínas/genética , Variación Genética , Alelos , Animales , Análisis Mutacional de ADN/métodos , Análisis Mutacional de ADN/veterinaria , Femenino , Haplotipos , Familia de Multigenes/genética , Polimorfismo Genético , Análisis de Secuencia de ADN/veterinaria , Emiratos Árabes UnidosRESUMEN
Goose is an important type of domesticated poultry. The wild geese that are regarded as the ancestors of modern domestic geese present gray plumage. Domesticated, geese have both white and gray feathers. To elucidate the genetic mechanisms underlying the formation of white and gray plumage in geese, we resequenced the whole genome of 18 geese from six populations including white and gray goose breeds. The average sequencing depth per individual was 9.81× and the average genome coverage was 96.8%. A total of 346 genes were detected in the top 1% of FST scores of gray- and white-feathered geese, and a significant FST site was located in the intron region within the KIT gene, the 18 bp deletion in KIT having the strongest potential association with white feathers. It has been reported that a number of genes are associated with plumage colors in birds. However, no studies have identified the relationship between KIT and plumage color in birds at present, although the white coat can be attributed to mutations in KIT in some mammals. Our study showed that that KIT is a plausible candidate gene for white/gray plumage color in Chinese domestic geese.
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Plumas , Gansos/genética , Pigmentación/genética , Proteínas Proto-Oncogénicas c-kit/genética , Animales , Cruzamiento , China , Color , Análisis Mutacional de ADN/veterinaria , Domesticación , Variación Genética , GenomaRESUMEN
BACKGROUND: Brachygnathia, cardiomegaly and renal hypoplasia syndrome (BCRHS, OMIA 001595-9940 ) is a previously reported recessively inherited disorder in Australian Poll Merino/Merino sheep. Affected lambs are stillborn with various congenital defects as reflected in the name of the disease, as well as short stature, a short and broad cranium, a small thoracic cavity, thin ribs and brachysternum. The BCRHS phenotype shows similarity to certain human short stature syndromes, in particular the human 3M syndrome-2. Here we report the identification of a likely disease-causing variant and propose an ovine model for human 3M syndrome-2. RESULTS: Eight positional candidate genes were identified among the 39 genes in the approximately 1 Mb interval to which the disease was mapped previously. Obscurin like cytoskeletal adaptor 1 (OBSL1) was selected as a strong positional candidate gene based on gene function and the resulting phenotypes observed in humans with mutations in this gene. Whole genome sequencing of an affected lamb (BCRHS3) identified a likely causal variant ENSOARG00000020239:g.220472248delC within OBSL1. Sanger sequencing of seven affected, six obligate carrier, two phenotypically unaffected animals from the original flock and one unrelated control animal validated the variant. A genotyping assay was developed to genotype 583 animals from the original flock, giving an estimated allele frequency of 5%. CONCLUSIONS: The identification of a likely disease-causing variant resulting in a frameshift (p.(Val573Trpfs*119)) in the OBSL1 protein has enabled improved breeding management of the implicated flock. The opportunity for an ovine model for human 3M syndrome and ensuing therapeutic research is promising given the availability of carrier ram semen for BCRHS.
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Modelos Animales de Enfermedad , Enanismo/genética , Mutación del Sistema de Lectura , Hipotonía Muscular/genética , Oveja Doméstica/genética , Secuencia de Aminoácidos , Animales , Australia , Proteínas del Citoesqueleto/genética , Análisis Mutacional de ADN/veterinaria , Femenino , Frecuencia de los Genes , Humanos , Masculino , Linaje , Fenotipo , Polimorfismo de Nucleótido Simple , Secuenciación Completa del Genoma/veterinariaRESUMEN
BACKGROUND: Munchkin cats were founded on a naturally occurring mutation segregating into long-legged and short-legged types. Short-legged cats showed disproportionate dwarfism (chondrodysplasia) in which all four legs are short and are referred as standard Munchkin cats. Long-legged animals are referred as non-standard Munchkin cats. A previous study using genome-wide single nucleotide polymorphisms (SNPs) for genome-wide association analysis identified a significantly associated region at 168-184 Mb on feline chromosome (FCA) B1. RESULTS: In this study, we validated the critical region on FCA B1 using a case-control study with 89 cats and 14 FCA B1-SNPs. A structural variant within UGDH (NC_018726.2:g.173294289_173297592delins108, Felis catus 8.0, equivalent to NC_018726.3:g.174882895_174886198delins108, Felis catus 9.0) on FCA B1 was perfectly associated with the phenotype of short-legged standard Munchkin cats. CONCLUSION: This UGDH structural variant very likely causes the chondrodysplastic (standard) phenotype in Munchkin cats. The lack of homozygous mutant phenotypes and reduced litter sizes in standard Munchkin cats suggest an autosomal recessive lethal trait in the homozygote state. We propose an autosomal dominant mode of inheritance for the chondrodysplastic condition in Munchkin cats.
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Gatos/genética , Uridina Difosfato Glucosa Deshidrogenasa/genética , Animales , Cruzamiento , Estudios de Casos y Controles , Análisis Mutacional de ADN/veterinaria , Femenino , Genes Letales , Genes Recesivos , Haplotipos , Homocigoto , Masculino , Mutación , Linaje , Fenotipo , Polimorfismo de Nucleótido Simple , Secuenciación Completa del Genoma/veterinariaRESUMEN
White-spotting coat colour phenotypes in cattle are either fixed characteristics of specific cattle breeds or occur sporadically owing to germline genetic variation of solid-coloured parents. A Brown Swiss cow showing a piebald pattern resembling colour-sidedness was referred for genetic evaluation. Both parents were normal solid-brown-coloured cattle. The cow was tested negative for the three known DNA variants in KIT, MITF and TWIST2 associated with different depigmentation phenotypes in Brown Swiss cattle. Whole-genome sequencing of the cow was performed and a heterozygous variant affecting the coding sequence of the bovine KIT gene was identified on chromosome 6. The variant is a 40 bp deletion in exon 9, NM_001166484.1:c.1390_1429del, and leads to a frameshift that is predicted to produce a novel 50 amino acid-long C-terminus replacing almost 50% of the wt KIT protein, including the functionally important intracellular tyrosine kinase domain (NP_001159956.1:p.(Asn464AlafsTer50)). Interestingly, among three available offspring, two solid-coloured daughters were genotyped as homozygous wt whereas a single son showing a slightly milder but still obvious depigmentation phenotype inherited a copy of the novel variant allele. The genetic findings provide strong evidence that the identified loss-of-function KIT variant most likely represents a de novo germline mutation that is causative owing to haploinsufficiency.
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Bovinos/genética , Mutación del Sistema de Lectura , Mutación de Línea Germinal , Proteínas Proto-Oncogénicas c-kit/genética , Animales , Análisis Mutacional de ADN/veterinaria , Femenino , Secuenciación Completa del Genoma/veterinariaRESUMEN
Feline infectious peritonitis (FIP) is a fatal disease for which no simple antemortem diagnostic assay is available. A new polymerase chain reaction (PCR) test has recently been developed that targets the spike protein region of the FIP virus (FIPV) and can identify specific mutations (M1030L or S1032A), the presence of which indicates a shift from feline enteric coronavirus (FeCV) to FIPV. This test will only be useful in the geographical region of interest, however, if the FIP viruses contain these mutations. The primary objective of this study was to determine the presence of the M1030L or S1032A mutations in FeCV derived from stool samples from a selected group of healthy cats from households and shelters and determine how many of these cats excrete FeCV. The secondary objective was to evaluate how often these specific FIPV mutations were present in tissue samples derived from cats diagnosed with FIP at postmortem examination. Feline enteric coronavirus (FeCV) was detected in 46% of fecal samples (86/185), all were FeCV type 1, with no difference between household or shelter cats. Only 45% of the FIPV analyzed contained the previously reported M1030L or S1032A mutations. It should be noted that, as the pathological tissue samples were opportunistically obtained and not specifically obtained for PCR testing, caution is warranted in interpreting these data.
La péritonite infectieuse féline (FIP) est une maladie fatale pour laquelle il n'existe pas de test diagnostique ante-mortem simple. Une nouvelle épreuve d'amplification en chaîne par la polymérase (PCR) a récemment été développée et qui vise la région de la protéine de spicule du virus FIP (FIPV) et peut identifier les mutations spécifiques (M1030L ou S1032A), la présence desquelles indique un glissement du coronavirus entérique félin (FeCV) vers le FIPV. Cette épreuve sera utile uniquement dans la région géographique d'intérêt, toutefois, si les virus FIP ont ces mutations. L'objectif premier de la présente étude était de déterminer la présence des mutations M1030L ou S1032A chez FeCV obtenu d'échantillons de fèces provenant d'un groupe sélectionné de chats en santé issus de maisonnée et refuges et de déterminer combien de ces chats excrètent FeCV. L'objectif secondaire était d'évaluer à quelle fréquence ces mutations spécifiques de FIPV étaient présentes dans des échantillons de tissu provenant de chats diagnostiqués avec FIP lors d'examen post-mortem. Le FeCV fut détecté dans 46 % des échantillons fécaux (86/185), tous de type FeCV 1, et aucune différence notée entre les chats de maisonnée ou de refuge. Seulement 45 % des FIPV analysés contenaient les mutations M1030L ou S1032A rapportées précédemment. Il faut noter que, étant donné que les échantillons de tissus pathologiques furent obtenus de manière opportuniste et non spécifiquement obtenus pour analyse par PCR, l'interprétation des résultats est à faire avec précaution.(Traduit par Docteur Serge Messier).
Asunto(s)
Enfermedades de los Gatos/virología , Coronavirus Felino/química , Peritonitis Infecciosa Felina/diagnóstico , Glicoproteína de la Espiga del Coronavirus/genética , Alberta/epidemiología , Secuencia de Aminoácidos , Animales , Enfermedades de los Gatos/diagnóstico , Enfermedades de los Gatos/epidemiología , Gatos , Coronavirus Felino/clasificación , Coronavirus Felino/genética , Coronavirus Felino/aislamiento & purificación , Análisis Mutacional de ADN/veterinaria , Heces/virología , Peritonitis Infecciosa Felina/epidemiología , Peritonitis Infecciosa Felina/virología , Femenino , Funciones de Verosimilitud , Masculino , Mutación , Filogenia , Reacción en Cadena de la Polimerasa/veterinaria , Prevalencia , ARN Viral/genética , ARN Viral/aislamiento & purificación , Saskatchewan/epidemiología , Alineación de Secuencia/veterinaria , Glicoproteína de la Espiga del Coronavirus/químicaRESUMEN
Sex determining region Y-box 9 (SOX9), an important member of the SRY- type HMGbox (SOX) gene family, plays an important role in the regulation of mammalian reproduction, including sex differentiation during the embryonic development stage and spermatogenesis after birth. To explore the roles of polymorphism and expression of the SOX9 gene in the development of testes, we analyzed the indel of SOX9 in pigs and the corresponding expression level of the SOX9 gene in 7-day and 5-month-old porcine Sertoli cells. Results revealed that the DD haplotype of SOX9 gene as well as the ID genotype were significantly associated with larger testicular weight, while the II haplotype was closely related to the smaller testicular weight. More importantly, the SOX9 gene expression of ID genotyped group was significantly higher than that in II genotyped group. Our results first revealed that the indel polymorphism and expression of SOX9 were significantly associated with pig reproduction traits indicating the critical roles of SOX9 gene in testes development. The study provides a new clue for understanding the regulation of animal reproductive activities.
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Mutación INDEL , Tamaño de los Órganos/genética , Factor de Transcripción SOX9/genética , Células de Sertoli/metabolismo , Porcinos/genética , Testículo/crecimiento & desarrollo , Animales , Análisis Mutacional de ADN/veterinaria , Regulación del Desarrollo de la Expresión Génica , Masculino , Reproducción/genética , Factor de Transcripción SOX9/metabolismo , Espermatogénesis/genética , TranscriptomaRESUMEN
The mutations of TP53 gene are frequently observed in canine histiocytic sarcoma (HS). The objective of this study was to examine the distribution of tumor cells with TP53 gene mutations. Tumor tissues were divided into three or four regions and TP53 gene mutations were examined. TP53 gene mutations were detected only in parts of the HS tissues from six of the eight dogs, and the frequency of the mutant allele varied (0-65%) among the tumor regions. This study suggests that canine HS can exhibit intratumor heterogeneity. Further studies are needed to examine the clinical significance of the intratumor heterogeneity of TP53 gene mutations.
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Enfermedades de los Perros/genética , Genes p53 , Sarcoma Histiocítico/genética , Animales , Análisis Mutacional de ADN/veterinaria , Perros , Mutación PuntualRESUMEN
The gene/mutation discovery approaches for inherited retinal diseases (RDs) in the dog model have seen considerable development over the past 25 years. Initial attempts were focused on candidate genes, followed by genome-wide approaches including linkage analysis and DNA-chip-based genome-wide association study. Combined, there are as many as 32 mutations in 27 genes that have been associated with canine retinal diseases to date. More recently, next-generation sequencing has become one of the key methods of choice. With increasing knowledge of the molecular basis of RDs and follow-up surveys in different subpopulations, the conventional understanding of RDs as simple Mendelian traits is being challenged. Modifiers and involvement of multiple genes that alter the disease expression are complicating the prediction of the disease course. In this chapter, advances in the gene/mutation discovery approaches for canine RDs are reviewed, and a multigenic form of canine RD is discussed using a form of canine cone-rod dystrophy as an example.
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Modelos Animales de Enfermedad , Enfermedades de los Perros/genética , Enfermedades de la Retina/veterinaria , Animales , Distrofias de Conos y Bastones/genética , Distrofias de Conos y Bastones/veterinaria , Análisis Mutacional de ADN/veterinaria , Perros/genética , Estudios de Asociación Genética/veterinaria , Ligamiento Genético , Estudio de Asociación del Genoma Completo/veterinaria , Enfermedades de la Retina/genética , Análisis de Secuencia de ADNRESUMEN
BACKGROUND: Leucine-rich glioma-inactivated (LGI) proteins play a critical role in synaptic transmission. Dysfunction of these genes and encoded proteins is associated with neurological disorders such as genetic epilepsy or autoimmune limbic encephalitis in animals and human. Familial spontaneous epileptic cats (FSECs) are the only feline strain and animal model of familial temporal lobe epilepsy. The seizure semiology of FSECs comprises recurrent limbic seizures with or without evolution into generalized epileptic seizures, while cats with antibodies against voltage-gated potassium channel complexed/LGI1 show limbic encephalitis and recurrent limbic seizures. However, it remains unclear whether the genetics underlying FSECs are associated with LGI family genes. In the present study, we cloned and characterized the feline LGI1-4 genes and examined their association with FSECs. Conventional PCR techniques were performed for cloning and mutational analysis. Characterization was predicted using bioinformatics software. RESULTS: The cDNAs of feline LGI1-4 contained 1674-bp, 1650-bp, 1647-bp, and 1617-bp open reading frames, respectively, and encoded proteins comprising 557, 549, 548, and 538 amino acid residues, respectively. The feline LGI1-4 putative protein sequences showed high homology with Homo sapiens, Canis familiaris, Bos taurus, Sus scrofa, and Equus caballus (92%-100%). Mutational analysis in 8 FSECs and 8 controls for LGI family genes revealed 3 non-synonymous and 14 synonymous single nucleotide polymorphisms in the coding region. Only one non-synonymous single nucleotide polymorphism in LGI4 was found in 3 out of 8 FSECs. Using three separate computational tools, this mutation was not predicted to be disease causing. No co-segregation of the disease was found with any variant. CONCLUSIONS: We cloned the cDNAs of the four feline LGI genes, analyzed the amino acid sequences, and revealed that epilepsy in FSEC is not a monogenic disorder associated with LGI genes.
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Enfermedades de los Gatos/genética , Síndromes Epilépticos/veterinaria , Animales , Gatos/genética , Clonación Molecular/métodos , Análisis Mutacional de ADN/veterinaria , Síndromes Epilépticos/genética , Femenino , Genes/genética , Masculino , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/veterinariaRESUMEN
The feline F12 gene was examined to identify a mutation associated with coagulation factor XII (FXII) deficiency in a litter of 6 cats, including 2 cats with severely reduced FXII activity (7.1 and 9.3%, respectively) and 4 cats with moderately reduced FXII activity (range 36.0 to 46.3%). Cats with severely reduced FXII activity were homozygous for a G to C missense mutation in exon 13 of the F12 gene, resulting in an amino acid change (p.G544A). Cats with moderately reduced FXII activity were heterozygous for this mutation. Expression studies revealed reduced secretion of p.G544A mutant FXII protein from transfected HEK293 cells compared with wild type FXII. These results reveal a novel F12 mutation in FXII deficient cats and define the underlying mechanism for low FXII activity in homozygotes.
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Enfermedades de los Gatos/genética , Deficiencia del Factor XII/veterinaria , Mutación , Animales , Gatos , Análisis Mutacional de ADN/veterinaria , Deficiencia del Factor XII/genética , Femenino , Células HEK293 , Humanos , MasculinoRESUMEN
Dogs with a 4-bp deletion in the MDR1 (or ABCB1) gene show intolerance to certain drugs routinely used in veterinary medicine, such as ivermectin, vincristine, and doxorubicin. The mutation leads to a dysfunctional P-glycoprotein drug transporter, which results in drug accumulation in the brain and severe neurotoxicity. A rapid and accurate in-house test to determine the genotype of patients in cases of acute neurotoxic signs or in tumor patients is desirable. We describe a cost-effective detection method with simple technical equipment for veterinary practice. Two allele-specific methods are presented, which allow discrimination of all genotypes, require little hands-on time, and show the results within ~1 h after DNA sampling. DNA from buccal swabs of 115 dogs with known genotype (no mutation, n = 54; heterozygous for the mutation, n = 37; homozygous for the mutation, n = 24) was extracted either by using a column-based extraction kit or by heating swabs in a simple NaOH-Tris buffer. Amplification was performed either by allele-specific fast polymerase chain reaction or by allele-specific loop-mediated isothermal amplification (LAMP). Analysis was done either on agarose gels, by simple endpoint visualization using ultraviolet light, or by measuring the increase of fluorescence and time to threshold crossing. Commercial master mixes reduced the preparation time and minimized sources of error in both methods. Both methods allowed the discrimination of all 3 genotypes, and the results of the new methods matched the results of the previous genotyping. The presented methods could be used for fast individual MDR1/ ABCB1 genotyping with less equipment than existing methods.
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Miembro 1 de la Subfamilia B de Casetes de Unión a ATP/genética , Genes MDR/genética , Animales , Análisis Mutacional de ADN/veterinaria , Cartilla de ADN , Perros , Técnicas de Amplificación de Ácido Nucleico/veterinaria , Reacción en Cadena de la Polimerasa/veterinaria , Eliminación de SecuenciaRESUMEN
BACKGROUND: TMEM16F is an ion channel and calcium-dependent lipid scramblase that mediates phosphatidylserine (PS) exposure on the plasma membrane. Two disparate disease phenotypes are associated with TMEM16F loss-of-function mutations: a rare bleeding disorder (Scott syndrome) and skeletal malformations due to aberrant bone mineralization in a TMEM16F knockout mouse. We therefore undertook comparative studies of TMEM16F expression in canine Scott syndrome (CSS), an autosomal recessive platelet defect. OBJECTIVES: To define anoctamin proteins and scramblase response of CSS platelets and to determine whether TMEM16F is the CSS disease gene. METHODS: CSS TMEM16F cDNA and gene were sequenced and mutation detection was performed in CSS pedigrees. Platelet fractions from CSS dogs were isolated for proteomic and immunologic characterization of TMEM16F. Annexin V was used as a flow cytometric marker of induced platelet PS externalization. RESULTS: A TMEM16F splice site mutation segregated with the CSS trait and TMEM16F protein was undetectable in CSS platelet membranes; however, a second anoctamin, TMEM16K, was found. Proteomic analyses revealed a network of 32 proteins that differentially cosegregated with platelet plasma membrane TMEM16F. CSS platelets had profoundly impaired scramblase response to pharmacologic and physiologic agents that increase intraplatelet calcium and conditions that induce apoptotic and necrotic cell death. CONCLUSIONS: CSS platelets represent a TMEM16F-null mutant model that demonstrates a central role for TMEM16F in mediating platelet PS externalization in response to activating and death signals. Platelet TMEM16F may prove a novel drug target for modulating platelet procoagulant activity and extending platelet life span.
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Trastornos de la Coagulación Sanguínea/veterinaria , Plaquetas/metabolismo , Enfermedades de los Perros/genética , Fosfatidilserinas/sangre , Proteínas de Transferencia de Fosfolípidos/genética , Mutación Puntual , Animales , Apoptosis , Secuencia de Bases , Trastornos de la Coagulación Sanguínea/sangre , Trastornos de la Coagulación Sanguínea/genética , Trastornos de la Coagulación Sanguínea/patología , Plaquetas/patología , Análisis Mutacional de ADN/veterinaria , Enfermedades de los Perros/sangre , Enfermedades de los Perros/patología , Perros , Citometría de Flujo/veterinaria , Predisposición Genética a la Enfermedad , Datos de Secuencia Molecular , Linaje , Fenotipo , Proteínas de Transferencia de Fosfolípidos/sangre , Proteínas de Transferencia de Fosfolípidos/deficiencia , ProteómicaRESUMEN
PRACTICAL RELEVANCE: The health of the cat is a complex interaction between its environment (nurture) and its genetics (nature). Over 70 genetic mutations (variants) have been defined in the cat, many involving diseases, structural abnormalities and clinically relevant health concerns. As more of the cat's genome is deciphered, less commonly will the term 'idiopathic' be used regarding the diagnosis of diseases and unique health conditions. State-of-the-art health care will include DNA profiling of the individual cat, and perhaps its tumor, to establish the best treatment approaches. Genetic testing and eventually whole genome sequencing should become routine diagnostics for feline health care. GLOBAL IMPORTANCE: Cat breeds have disseminated around the world. Thus, practitioners should be aware of the breeds common to their region and the mutations found in those regional populations. Specific random-bred populations can also have defined genetic characteristics and mutations. AUDIENCE: This review of 'the good, the bad and the ugly' DNA variants provides the current state of knowledge for genetic testing and genetic health management for cats. It is aimed at feline and general practitioners wanting to update and review the basics of genetics, what tests are available for cats and sources for genetic testing. The tables are intended to be used as references in the clinic. Practitioners with a high proportion of cat breeder clientele will especially benefit from the review. EVIDENCE BASE: The data presented is extracted from peer-reviewed publications pertaining to mutation identification, and relevant articles concerning the heritable trait and/or disease. The author also draws upon personal experience and expertise in feline genetics.
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Enfermedades de los Gatos/genética , Enfermedades de los Gatos/prevención & control , Gatos/genética , Análisis Mutacional de ADN/veterinaria , Enfermedades Genéticas Congénitas/veterinaria , Mutación , Animales , Cruzamiento/métodos , Enfermedades de los Gatos/diagnóstico , ADN/genética , Enfermedades Genéticas Congénitas/prevención & control , Pruebas Genéticas/veterinaria , Terapia Genética/veterinariaRESUMEN
Leopard complex spotting is inherited by the incompletely dominant locus, LP, which also causes congenital stationary night blindness in homozygous horses. We investigated an associated single nucleotide polymorphism in the TRPM1 gene in 96 archaeological bones from 31 localities from Late Pleistocene (approx. 17 000 YBP) to medieval times. The first genetic evidence of LP spotting in Europe dates back to the Pleistocene. We tested for temporal changes in the LP associated allele frequency and estimated coefficients of selection by means of approximate Bayesian computation analyses. Our results show that at least some of the observed frequency changes are congruent with shifts in artificial selection pressure for the leopard complex spotting phenotype. In early domestic horses from Kirklareli-Kanligecit (Turkey) dating to 2700-2200 BC, a remarkably high number of leopard spotted horses (six of 10 individuals) was detected including one adult homozygote. However, LP seems to have largely disappeared during the late Bronze Age, suggesting selection against this phenotype in early domestic horses. During the Iron Age, LP reappeared, probably by reintroduction into the domestic gene pool from wild animals. This picture of alternating selective regimes might explain how genetic diversity was maintained in domestic animals despite selection for specific traits at different times.
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Enfermedades Hereditarias del Ojo/veterinaria , Enfermedades Genéticas Ligadas al Cromosoma X/veterinaria , Variación Genética , Color del Cabello/genética , Enfermedades de los Caballos/genética , Enfermedades de los Caballos/historia , Miopía/veterinaria , Ceguera Nocturna/veterinaria , Selección Genética , Canales Catiónicos TRPM/genética , Animales , Secuencia de Bases , Teorema de Bayes , ADN/genética , ADN/historia , Análisis Mutacional de ADN/veterinaria , Cartilla de ADN/genética , Europa (Continente) , Enfermedades Hereditarias del Ojo/genética , Fósiles , Frecuencia de los Genes , Enfermedades Genéticas Ligadas al Cromosoma X/genética , Historia Antigua , Historia Medieval , Caballos , Datos de Secuencia Molecular , Miopía/genética , Ceguera Nocturna/genética , Polimorfismo de Nucleótido Simple/genéticaRESUMEN
Niemann-Pick C disease (NPC) is an autosomal recessive lysosomal storage disorder characterized by accumulation of unesterified cholesterol and other lipids within the lysosomes due to mutation in NPC1 or NPC2 genes. A feline model of NPC carrying a mutation in NPC1 gene has been previously described. We have identified two kittens affected by NPC disease due to a mutation in NPC2 gene. They manifested with tremors at the age of 3 months, which progressed to dystonia and severe ataxia. At 6 months of age cat 2 was unable to stand without assistance and had bilaterally reduced menace response. It died at the age of 10 months. Post-mortem histological analysis of the brain showed the presence of neurons with cytoplasmic swelling and vacuoles, gliosis of the substantia nigra and degeneration of the white matter. Spheroids with accumulation of ubiquitinated aggregates were prominent in the cerebellar cortex. Purkinje cells were markedly reduced in number and they showed prominent intracytoplasmic storage. Scattered perivascular aggregates of lymphocytes and microglial cells proliferation were present in the thalamus and midbrain. Proliferation of Bergmann glia was also observed. In the liver, hepatocytes were swollen because of accumulation of small vacuoles and foamy Kupffer cells were also detected. Foamy macrophages were observed within the pulmonary interstitium and alveoli as well. At 9 months cat 1 was unable to walk, developed seizures and it was euthanized at 21 months. Filipin staining of cultured fibroblasts showed massive storage of unesterified cholesterol. Molecular analysis of NPC1 and NPC2 genes showed the presence of a homozygous intronic mutation (c.82+5G>A) in the NPC2 gene. The subsequent analysis of the mRNA showed that the mutation causes the retention of 105 bp in the mature mRNA, which leads to the in frame insertion of 35 amino acids between residues 28 and 29 of NPC2 protein (p.G28_S29ins35).
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Proteínas Portadoras/genética , Enfermedades de los Gatos/genética , Enfermedades de los Gatos/patología , Glicoproteínas/genética , Modelos Moleculares , Enfermedad de Niemann-Pick Tipo C/veterinaria , Animales , Secuencia de Bases , Western Blotting/veterinaria , Encéfalo/patología , Proteínas Portadoras/química , Gatos , Colesterol/metabolismo , Análisis Mutacional de ADN/veterinaria , Resultado Fatal , Glicoproteínas/química , Técnicas Histológicas/veterinaria , Intrones/genética , Datos de Secuencia Molecular , Mutación/genética , Enfermedad de Niemann-Pick Tipo C/genética , Enfermedad de Niemann-Pick Tipo C/patología , Alineación de Secuencia , Análisis de Secuencia de ADN/veterinariaRESUMEN
Domestic dogs are unique from other animal models of cancer in that they generally experience spontaneous disease. In addition, most types of cancer observed in humans are found in dogs, suggesting that canines may be an informative system for the study of cancer genetics. Domestic dogs are divided into over 175 breeds, with members of each breed sharing significant phenotypes. The breed barrier enhances the utility of the model, especially for genetic studies where small numbers of genes are hypothesized to account for the breed cancer susceptibility. These facts, combined with recent advances in high-throughput sequencing technologies allows for an unrivaled ability to use pet dog populations to find often subtle mutations that promote cancer susceptibility and progression in dogs as a whole. The meticulous record keeping associated with dog breeding makes the model still more powerful, as it facilitates both association analysis and family-based linkage studies. Key to the success of these studies is their cooperative nature, with owners, scientists, veterinarians and breed clubs working together to avoid the cost and unpopularity of developing captive populations. In this article we explore these principals and advocate for colony-free, genetic studies that will enhance our ability to diagnose and treat cancer in dogs and humans alike.
Asunto(s)
Modelos Animales de Enfermedad , Enfermedades de los Perros/genética , Sarcoma Histiocítico/veterinaria , Neoplasias de la Próstata/veterinaria , Sistema de Registros , Investigación/tendencias , Neoplasias de la Vejiga Urinaria/veterinaria , Animales , Análisis Mutacional de ADN/métodos , Análisis Mutacional de ADN/veterinaria , Perros , Sarcoma Histiocítico/genética , Masculino , Neoplasias de la Próstata/genética , Especificidad de la Especie , Neoplasias de la Vejiga Urinaria/genéticaRESUMEN
Attainment of puberty is a key developmental event influenced by genetic and environmental factors. In examining age at attainment of puberty, we observed closely related rams from the Davisdale line whose daughters differed in age at which they attained puberty. A candidate gene approach was used to identify mutations that may underlie these observed differences. Four rams with divergent phenotypes for their daughter's age at onset of puberty were selected for whole-genome sequencing. The coding regions of genes with known roles in regulating reproductive function were searched for single-nucleotide polymorphisms (SNPs) that altered the amino acid sequence of the protein. Of interest were three SNPs in the leptin receptor gene (LEPR). A Sequenom assay was developed to determine the genotype of these SNPs in daughters of 17 sons of a founding sire. A higher percentage of ewe lambs homozygous for the LEPR mutations failed to undergo puberty before 1 yr of age, and those that did undergo puberty during the first breeding season on average were approximately 17 days older than homozygous wild-type ewes. Heterozygous ewes were intermediate for both measurements. Given the predicted change in protein function produced by the mutation in LEPR and the strong associations between the genotype and onset of puberty phenotypes, we propose that this mutation in LEPR underlies the observed difference in age at onset of puberty in the Davisdale line. Furthermore, these animals will likely provide a useful model to better understand the role of leptin in the regulation of puberty.