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1.
Viruses ; 13(11)2021 11 04.
Artículo en Inglés | MEDLINE | ID: mdl-34835026

RESUMEN

The fall armyworm (FAW), Spodoptera frugiperda, is a native pest species in the Western hemisphere. Since it was first reported in Africa in 2016, FAW has spread throughout the African continent and is now also present in several countries in Asia as well as Australia. The invasion of FAW in these areas has led to a high yield reduction in crops, leading to huge economic losses. FAW management options in the newly invaded areas are limited and mainly rely on the use of synthetic pesticides. Since there is a risk of resistance development against pesticides in addition to the negative environmental and human health impacts, other effective, sustainable, and cost-efficient control alternatives are desired. Insect pathogenic viruses fulfil these criteria as they are usually effective and highly host-specific with no significant harmful effect on beneficial insects and non-target organisms. In this review, we discuss all viruses known from FAW and their potential to be used for biological control. We specifically focus on baculoviruses and describe the recent advancements in the use of baculoviruses for biological control in the native geographic origin of FAW, and their potential use in the newly invaded areas. Finally, we identify current knowledge gaps and suggest new avenues for productive research on the use of viruses as a biopesticide against FAW.


Asunto(s)
Virus de Insectos/fisiología , Control Biológico de Vectores , Spodoptera/virología , Animales , Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Baculoviridae/fisiología , Agentes de Control Biológico/aislamiento & purificación , Productos Agrícolas , Especificidad del Huésped , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación , Control Biológico de Vectores/tendencias
2.
Mol Biotechnol ; 63(11): 1068-1080, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34228257

RESUMEN

Rabies is an ancient zoonotic disease that still causes the death of over 59,000 people worldwide each year. The rabies lyssavirus encodes five proteins, including the envelope glycoprotein and the matrix protein. RVGP is the only protein exposed on the surface of viral particle, and it can induce immune response with neutralizing antibody formation. RVM has the ability to assist with production process of virus-like particles. VLPs were produced in recombinant baculovirus system. In this work, two recombinant baculoviruses carrying the RVGP and RVM genes were constructed. From the infection and coinfection assays, we standardized the best multiplicity of infection and the best harvest time. Cell supernatants were collected, concentrated, and purified by sucrose gradient. Each step was used for protein detection through immunoassays. Sucrose gradient analysis enabled to verify the separation of VLPs from rBV. Through the negative contrast technique, we visualized structures resembling rabies VLPs produced in insect cells and rBV in the different fractions of the sucrose gradient. Using ELISA to measure total RVGP, the recovery efficiency of VLPs at each stage of the purification process was verified. Thus, these results encourage further studies to confirm whether rabies VLPs are a promising candidate for a veterinary rabies vaccine.


Asunto(s)
Baculoviridae/genética , Insectos/metabolismo , Vacunas Antirrábicas/biosíntesis , Virus de la Rabia/metabolismo , Rabia/virología , Vacunas de Partículas Similares a Virus/biosíntesis , Animales , Baculoviridae/aislamiento & purificación , Baculoviridae/metabolismo , Células Cultivadas , Humanos , Insectos/inmunología , Insectos/virología , Vacunas Antirrábicas/genética , Vacunas Antirrábicas/inmunología , Vacunas Antirrábicas/aislamiento & purificación , Virus de la Rabia/inmunología , Virus de la Rabia/aislamiento & purificación , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Vacunas de Partículas Similares a Virus/genética , Vacunas de Partículas Similares a Virus/inmunología , Vacunas de Partículas Similares a Virus/aislamiento & purificación
3.
Viruses ; 12(6)2020 06 09.
Artículo en Inglés | MEDLINE | ID: mdl-32526997

RESUMEN

Natural isolates of baculoviruses (as well as other dsDNA viruses) generally consist of homogenous or heterogenous populations of genotypes. The number and positions of single nucleotide polymorphisms (SNPs) from sequencing data are often used as suitable markers to study their genotypic composition. Identifying and assigning the specificities and frequencies of SNPs from high-throughput genome sequencing data can be very challenging, especially when comparing between several sequenced isolates or samples. In this study, the new tool "bacsnp", written in R programming langue, was developed as a downstream process, enabling the detection of SNP specificities across several virus isolates. The basis of this analysis is the use of a common, closely related reference to which the sequencing reads of an isolate are mapped. Thereby, the specificities of SNPs are linked and their frequencies can be used to analyze the genetic composition across the sequenced isolate. Here, the downstream process and analysis of detected SNP positions is demonstrated on the example of three baculovirus isolates showing the fast and reliable detection of a mixed sequenced sample.


Asunto(s)
Baculoviridae/genética , Polimorfismo de Nucleótido Simple , Animales , Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Genoma Viral , Genotipo , Mariposas Nocturnas/virología , Análisis de Secuencia de ADN
4.
Protein Expr Purif ; 165: 105496, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31518639

RESUMEN

Recombinant protein production in the baculovirus expression vector system (BEVS) has emerged as a system of choice for the production of recombinant human proteins for R&D purposes. Scale-up protein production in insect cells past the one or two liter volume generally utilizes disposable cellbag bioreactors that provide a means to scale to the 5-25L range in a single vessel. However, cellbags can be expensive and their use requires capital investment in dedicated rocker platforms and their associated air pumps and exhaust heaters. Additional equipment, such as tube welders and liquid pumps are often also deployed for the sterile transfer of media outside of a biosafety cabinet. Herein it is reported that Sf9, Sf21 and High Five insect cells demonstrate normal growth characteristics when cultured at the 2.5 L level in 3 L Erlenmeyer flasks, or at the 4.5 L level in 5 L Erlenmeyer flasks in standard laboratory shakers. In addition, a direct comparison of the expression levels of four separate proteins at the 4.5 L scale in 5 L flasks versus those at the 5 L scale in 10 L cellbags demonstrates that protein production is equal to, or slightly better, in the flasks versus the cellbags. The adoption of high-volume shake flasks for routine recombinant protein production in insect cells has a number of advantages over disposable bioreactors in terms of ease of use, and equipment and disposables costs.


Asunto(s)
Baculoviridae/genética , Baculoviridae/aislamiento & purificación , Técnicas de Cultivo Celular por Lotes/métodos , Proteína Quinasa C/genética , Proteínas Recombinantes/genética , Animales , Reactores Biológicos , Células Cultivadas , Cromatografía de Afinidad , Vectores Genéticos/metabolismo , Insectos/citología , Insectos/metabolismo , Modelos Biológicos , Fosfinas/química , Células Sf9/metabolismo , Factores de Tiempo , Transfección
5.
J Virol Methods ; 275: 113756, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31644888

RESUMEN

The continuously increasing potential of stem cell treatments for various medical conditions has accelerated the need for fast and efficient purification techniques for individualized cell therapy applications. Genetic stem cell engineering is commonly done with viral vectors like the baculovirus. The baculovirus is a safe and efficient gene transfer tool, that has been used for the expression of recombinant proteins for many years. Its purification has been based mainly on ion exchange matrices. However, these techniques impair process robustness, if different genetically modified virus particles are applied. Here, we evaluated the membrane-based steric exclusion chromatography for the purification of insect cell culture-derived recombinant Autographa californica multicapsid nucleopolehydroviruses for an application in cell therapy. The method has already proven to be a powerful tool for the purification of Influenza A virus particles, using cellulose membranes. Aside from the aforementioned cellulose, we evaluated alternative stationary phases, such as glass fiber and polyamide membranes. The highest dynamic binding capacitiy was determined for cellulose with 5.08E + 07 pfu per cm² membrane. Critical process parameters were optimized, using a design of experiments (DoE) approach. The determined process conditions were verified by different production batches, obtaining a mean virus yield of 91% ± 6.5%. Impurity depletion was >99% and 85% for protein and dsDNA, without nuclease treatment. Due to the method's specificity, its application to other baculoviruses, with varying surface modifications, is conceivable without major process changes. The physiological buffer conditions enable a gentle handling of the virus particles without decreasing the transduction efficacy. The simple procedure with sufficient impurity removal enables the substitution of time-consuming ultra centrifugation steps and can serve as a first process unit operation to obtain higher purities.


Asunto(s)
Baculoviridae/aislamiento & purificación , Cromatografía en Gel/métodos , Virión/aislamiento & purificación , Línea Celular , Tratamiento Basado en Trasplante de Células y Tejidos , Humanos , Células Madre Mesenquimatosas , Ultracentrifugación , Cultivo de Virus
6.
Rev. argent. microbiol ; 51(4): 381-385, dic. 2019. graf
Artículo en Inglés | LILACS | ID: biblio-1057404

RESUMEN

Abstract The fall armyworm, Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae), is an important maize pest. Due to the environmental impact and emergence of resistance caused by chemical pesticides and transgenic events, the use of baculoviruses becomes a safe and useful alternative for its control in integrated pest management strategies. Here we report the identification of a novel isolate of a granulovirus of S. frugiperda native to the central region of Argentina, named SfGV ARG. We observed that larvae infected with SfGV ARG showed a yellowish coloration, swollen body and, in some cases, severe lesions in the last abdominal segments. We confirmed the identity of the isolate by sequencing fragments of the lef-8, lef-9 and granulin genes and by calculating evolutionary distances using the Kimura-2-Parameter model. SfGV ARG DNA restriction pattern allowed to estimate a genome of at least 135 kb.


Resumen La oruga militar tardía, Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae), es una plaga importante del maíz. Debido al impacto ambiental y a la aparición de resistencia causados por los pesticidas químicos y los eventos transgénicos, el uso de baculovirus resulta una alternativa útil y saludable para su control en estrategias de manejo integrado de plagas. En este trabajo reportamos la identificación de un nuevo aislamiento del granulovirus de la S. frugiperda nativo de la región central de Argentina, SfGV ARG. Se observó que larvas infectadas con SfGV ARG mostraron coloración amarillenta, hinchazón y, en algunos casos, lesiones graves en los últimos segmentos abdominales. Se confirmó la identidad del aislamiento por secuenciación de fragmentos de los genes lef-8, lef-9y granulina, y por cálculo de distancias evolutivas usando el parámetro de Kimura-2. El patrón de restricción generado con el ADN genómico de SfGV ARG permitió estimar un tamaño de genoma de al menos 135 kb.


Asunto(s)
Control Biológico de Vectores/métodos , Spodoptera/parasitología , Granulovirus/aislamiento & purificación , Plaguicidas , Argentina , Baculoviridae/aislamiento & purificación , Plagas Agrícolas
7.
BMC Genomics ; 20(1): 419, 2019 May 27.
Artículo en Inglés | MEDLINE | ID: mdl-31133070

RESUMEN

BACKGROUND: The golden birdwing butterfly (Troides aeacus formosanus) is a rarely observed species in Taiwan. Recently, a typical symptom of nuclear polyhedrosis was found in reared T. aeacus larvae. From the previous Kimura-2 parameter (K-2-P) analysis based on the nucleotide sequence of three genes in this isolate, polh, lef-8 and lef-9, the underlying virus did not belong to any known nucleopolyhedrovirus (NPV) species. Therefore, this NPV was provisionally named "TraeNPV". To understand this NPV, the nucleotide sequence of the whole TraeNPV genome was determined using next-generation sequencing (NGS) technology. RESULTS: The genome of TraeNPV is 125,477 bp in length with 144 putative open reading frames (ORFs) and its GC content is 40.45%. A phylogenetic analysis based on the 37 baculoviral core genes suggested that TraeNPV is a Group I NPV that is closely related to Autographa californica nucleopolyhedrovirus (AcMNPV). A genome-wide analysis showed that TraeNPV has some different features in its genome compared with other NPVs. Two novel ORFs (Ta75 and Ta139), three truncated ORFs (pcna, he65 and bro) and one duplicated ORF (38.7 K) were found in the TraeNPV genome; moreover, there are fewer homologous regions (hrs) than there are in AcMNPV, which shares eight hrs within the TraeNPV genome. TraeNPV shares similar genomic features with AcMNPV, including the gene content, gene arrangement and gene/genome identity, but TraeNPV lacks 15 homologous ORFs from AcMNPV in its genome, such as ctx, host cell-specific factor 1 (hcf-1), PNK/PNL, vp15, and apsup, which are involved in the auxiliary functions of alphabaculoviruses. CONCLUSIONS: Based on these data, TraeNPV would be clarified as a new NPV species with defective AcMNPV genomic features. The precise relationship between TraeNPV and other closely related NPV species were further investigated. This report could provide comprehensive information on TraeNPV for evolutionary insights into butterfly-infected NPV.


Asunto(s)
Baculoviridae/genética , Mariposas Diurnas/virología , Genoma Viral , Animales , Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Mariposas Diurnas/crecimiento & desarrollo , Replicación del ADN , ADN Viral/química , Genes Duplicados , Genes Virales , Genómica , Especificidad del Huésped/genética , Larva/virología , Sistemas de Lectura Abierta , Filogenia , Homología de Secuencia de Ácido Nucleico , Transcripción Genética , Proteínas Estructurales Virales/genética
8.
BMC Genomics ; 19(1): 698, 2018 Sep 24.
Artículo en Inglés | MEDLINE | ID: mdl-30249206

RESUMEN

BACKGROUND: Erinnyis ello granulovirus (ErelGV) is a betabaculovirus infecting caterpillars of the sphingid moth E. ello ello (cassava hornworm), an important pest of cassava crops (Manihot esculenta). In this study, the genome of seven field isolates of the virus ErelGV were deep sequenced and their inter- and intrapopulational sequence diversity were analyzed. RESULTS: No events of gene gain/loss or translocations were observed, and indels were mainly found within highly repetitive regions (direct repeats, drs). A naturally occurring isolate from Northern Brazil (Acre State, an Amazonian region) has shown to be the most diverse population, with a unique pattern of polymorphisms. Overall, non-synonymous substitutions were found all over the seven genomes, with no specific gathering of mutations on hotspot regions. Independently of their sizes, some ORFs have shown higher levels of non-synonymous changes than others. Non-core genes of known functions and structural genes were among the most diverse ones; and as expected, core genes were the least variable genes. We observed remarkable differences on diversity of paralogous genes, as in multiple copies of p10, fgf, and pep. Another important contrast on sequence diversity was found on genes encoding complex subunits and/or involved in the same biological processes, as late expression factors (lefs) and per os infectivity factors (pifs). Interestingly, several polymorphisms in coding regions lie on sequences encoding specific protein domains. CONCLUSIONS: By comparing and integrating information about inter- and intrapopulational diversity of viral isolates, we provide a detailed description on how evolution operates on field isolates of a betabaculovirus. Our results revealed that 35-41% of the SNPs of ErelGV lead to amino acid changes (non-synonymous substitutions). Some genes, especially non-core genes of unknown functions, tend to accumulate more mutations, while core genes evolve slowly and are more conserved. Additional studies would be necessary to understand the actual effects of such gene variations on viral infection and fitness.


Asunto(s)
Baculoviridae/genética , Genoma Viral , Polimorfismo Genético , Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Filogenia , Proteínas Virales/genética
9.
J Vis Exp ; (134)2018 04 09.
Artículo en Inglés | MEDLINE | ID: mdl-29683451

RESUMEN

Baculovirus has traditionally been used for the production of recombinant protein and vaccine. However, more recently, baculovirus is emerging as a promising vector for gene therapy application. Here, baculovirus is produced by transient transfection of the baculovirus plasmid DNA (bacmid) in an adherent culture of Sf9 cells. Baculovirus is subsequently expanded in Sf9 cells in a serum-free suspension culture until the desired volume is obtained. It is then purified from the culture supernatant using heparin affinity chromatography. Virus supernatant is loaded onto the heparin column which binds baculovirus particles in the supernatant due to the affinity of heparin for baculovirus envelop glycoprotein. The column is washed with a buffer to remove contaminants and baculovirus is eluted from the column with a high-salt buffer. The eluate is diluted to an isotonic salt concentration and baculovirus particles are further concentrated using ultracentrifugation. Using this method, baculovirus can be concentrated up to 500-fold with a 25% recovery of infectious particles. Although the protocol described here demonstrates the production and purification of the baculovirus from cultures up to 1 L, the method can be scaled-up in a closed-system suspension culture to produce a clinical-grade vector for gene therapy application.


Asunto(s)
Baculoviridae/aislamiento & purificación , Terapia Genética/métodos , Baculoviridae/genética , Baculoviridae/crecimiento & desarrollo , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Transfección
10.
Viruses ; 10(3)2018 03 16.
Artículo en Inglés | MEDLINE | ID: mdl-29547534

RESUMEN

In this report, we described the genome of a novel baculovirus isolated from the monocot insect pest Mocis latipes, the striped grass looper. The genome has 134,272 bp in length with a G + C content of 38.3%. Based on the concatenated sequence of the 38 baculovirus core genes, we found that the virus is a betabaculovirus closely related to the noctuid-infecting betabaculoviruses including Pseudaletia unipuncta granulovirus (PsunGV), Trichoplusia ni granulovirus (TnGV), Helicoverpa armigera granulovirus (HearGV), and Xestia c-nigrum granulovirus (XecnGV). The virus may constitute a new Betabaculovirus species tentatively named Mocis latipes granulovirus (MolaGV). After gene content analysis, five open reading frames (ORFs) were found to be unique to MolaGV and several auxiliary genes were found including iap-3, iap-5, bro-a, bro-b, and three enhancins. The virus genome lacked both chitinase and cathepsin. We then looked at the evolutionary history of the enhancin gene and found that betabaculovirus acquired this gene from an alphabaculovirus followed by several duplication events. Gene duplication also happened to an endonuclease-like gene. Genomic and gene content analyses revealed both a strict collinearity and gene expansion into the genome of the MolaGV-related species. We also characterized the granulin gene using a recombinant Autographa californica multiple nucleopolyhedrovirus (AcMNPV) and found that occlusion bodies were produced into the nucleus of infected cells and presented a polyhedral shape and no occluded virions within. Overall, betabaculovirus genome sequencing is of importance to the field as few genomes are publicly accessible. Mocislatipes is a secondary pest of maize, rice, and wheat crops in Brazil. Certainly, both the discovery and description of novel baculoviruses may lead to development of greener and safer pesticides in order to counteract and effectively control crop damage-causing insect populations.


Asunto(s)
Baculoviridae/genética , Baculoviridae/aislamiento & purificación , Evolución Molecular , Dosificación de Gen , Genes Virales , Lepidópteros/virología , Animales , Baculoviridae/clasificación , Composición de Base , Genoma Viral , Genómica , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ADN
11.
Virus Res ; 249: 76-84, 2018 04 02.
Artículo en Inglés | MEDLINE | ID: mdl-29571652

RESUMEN

Baculoviruses are insect viruses largely used as expression vectors and biopesticides. These viruses can efficiently infect the larval stage of several agricultural pests worldwide causing a lethal disease. In this work, we found a novel baculovirus isolated from the larval stage of Urbanus proteus (L.), the bean leafroller and characterized its complete genome. This is an important pest of several leguminous plants in Brazil and belongs to the butterfly family Hesperiidae, from where no baculovirus genome sequence has been described. This new virus was shown to have the smallest genome among all alphabaculoviruses sequenced to date, with 105,555 bp and 119 putative ORFs. We found ten unique genes, seven bro, and the 38 baculovirus core genes. UrprNPV was found to be related to the Adoxophyes-infecting baculoviruses AdorNPV and AdhoNPV with high genetic distance and a long branch length. Interestingly, few individual core gene-based phylogenies were found to support the relationship of UrprNPV to both AdorNPV and AdhoNPV. Importantly, the increase in number of completely sequenced baculovirus points to a very exciting way to understand baculovirus and its evolution and could potentially help the use of baculovirus as both biopesticides and expression vectors.


Asunto(s)
Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Genoma Viral , Lepidópteros/virología , Análisis de Secuencia de ADN , Secuenciación Completa del Genoma , Animales , Baculoviridae/genética , Brasil , Análisis por Conglomerados , Larva/virología , Sistemas de Lectura Abierta , Filogenia , Plantas/parasitología , Homología de Secuencia
12.
PLoS One ; 13(2): e0192279, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29390020

RESUMEN

Oxyplax ochracea (Moore) is a pest that causes severe damage to a wide range of crops, forests and fruit trees. The complete genome sequence of Oxyplax ochracea nucleopolyhedrovirus (OxocNPV) was determined using a Roche 454 pyrosequencing system. OxocNPV has a double-stranded DNA (dsDNA) genome of 113,971 bp with a G+C content of 31.1%. One hundred and twenty-four putative open reading frames (ORFs) encoding proteins of >50 amino acids in length and with minimal overlapping were predicted, which covered 92% of the whole genome. Six baculoviral typical homologous regions (hrs) were identified. Phylogenetic analysis and gene parity plot analysis showed that OxocNPV belongs to clade "a" of Group I alphabaculoviruses, and it seems to be close to the most recent common ancestor of Group I alphabaculoviruses. Three unique ORFs (with no homologs in the National Center for Biotechnology Information database) were identified. Interestingly, OxocNPV lacks three auxiliary genes (lef7, ie-2 and pcna) related to viral DNA replication and RNA transcription. In addition, OxocNPV has significantly different sequences for several genes (including ie1 and odv-e66) in comparison with those of other baculoviruses. However, three dimensional structure prediction showed that OxocNPV ODV-E66 contain the conserved catalytic residues, implying that it might possess polysaccharide lyase activity as AcMNPV ODV-E66. All these unique features suggest that OxocNPV represents a novel species of the Group I alphabaculovirus lineage.


Asunto(s)
Baculoviridae/genética , Genoma Viral , Lepidópteros/virología , Animales , Baculoviridae/aislamiento & purificación , Secuencia de Bases , Replicación del ADN , Sistemas de Lectura Abierta , ARN Viral/genética , Homología de Secuencia de Ácido Nucleico , Transcripción Genética
13.
Chem Commun (Camb) ; 54(10): 1189-1192, 2018 Jan 31.
Artículo en Inglés | MEDLINE | ID: mdl-29334085

RESUMEN

A non-invasive labelling strategy is proposed to label baculovirus via genetic insertion of a SpyTag into the viral glycoprotein, followed by specific conjugation with the SpyCatcher protein on modified quantum dots (QDs) through an isopeptide bond. The labelling method is convenient and efficient and shows little attenuation of viral infectivity. Therefore, it is a biologically compatible technique for tracking viral infection.


Asunto(s)
Baculoviridae/aislamiento & purificación , Péptidos/química , Puntos Cuánticos , Coloración y Etiquetado , Virosis/diagnóstico , Virosis/virología , Animales , Supervivencia Celular , Células Sf9 , Spodoptera , Proteínas del Envoltorio Viral/química
14.
Int J Mol Sci ; 19(1)2017 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-29283392

RESUMEN

Baculoviruses have been used as biopesticides for decades. Recently, due to the excessive use of chemical pesticides there is a need for finding new agents that may be useful in biological protection. Sometimes few isolates or species are discovered in one host. In the past few years, many new baculovirus species have been isolated from environmental samples, thoroughly characterized and thanks to next generation sequencing methods their genomes are being deposited in the GenBank database. Next generation sequencing (NGS) methodology is the most certain way of detection, but it has many disadvantages. During our studies, we have developed a method based on Polymerase chain reaction (PCR) followed by Multitemperature Single Stranded Conformational Polymorphism (MSSCP) which allows for distinguishing new granulovirus isolates in only a few hours and at low-cost. On the basis of phylogenetic analysis of betabaculoviruses, representative species have been chosen. The alignment of highly conserved genes-granulin and late expression factor-9, was performed and the degenerate primers were designed to amplify the most variable, short DNA fragments flanked with the most conserved sequences. Afterwards, products of PCR reaction were analysed by MSSCP technique. In our opinion, the proposed method may be used for screening of new isolates derived from environmental samples.


Asunto(s)
Baculoviridae/genética , Bioensayo , ADN Viral/genética , Genoma Viral , Péptidos y Proteínas de Señalización Intercelular/genética , Proteínas Virales/genética , Animales , Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Secuencia de Bases , ADN Viral/metabolismo , Secuenciación de Nucleótidos de Alto Rendimiento , Péptidos y Proteínas de Señalización Intercelular/metabolismo , Lepidópteros/virología , Filogenia , Polimorfismo Conformacional Retorcido-Simple , Progranulinas , Alineación de Secuencia , Homología de Secuencia de Ácido Nucleico , Proteínas Virales/metabolismo
15.
Biotechniques ; 63(4): 161-168, 2017 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-29048267

RESUMEN

Measurement of virus concentration is essential for effective virus-based transfection technologies. Here, we describe a user-friendly, image-based cell-size estimation (ICSE) assay for baculovirus quantification that relies on automated determination of cell diameters from bright-field microscopy images. In the ICSE assay, microplate-based imaging systems and our custom ICSE-Tools software enable measurement of cell morphological parameters over time. Results from the ICSE assay were in agreement with virus concentration measurements obtained using the traditional plaque assay as well as the Coulter principle-based cell-size measurement assay. ICSE-Tools is designed for data organization and image analysis from microplate-based imaging systems, and is freely available at www.gpcr.ut.ee/software.html.


Asunto(s)
Baculoviridae/aislamiento & purificación , Tamaño de la Célula , Procesamiento de Imagen Asistido por Computador/métodos , Reconocimiento de Normas Patrones Automatizadas/métodos , Animales , Baculoviridae/genética , Vectores Genéticos/genética , Microscopía , Imagen Óptica , Células Sf9 , Programas Informáticos , Spodoptera/citología , Spodoptera/genética , Transfección
16.
Arch Virol ; 162(12): 3705-3715, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28856619

RESUMEN

The complete genome of a Trichoplusia ni granulovirus (TnGV) is described and analyzed. The genome contains 175,360 bp (KU752557), becoming the third largest genome within the genus Betabaculovirus, smaller only than the Xestia c-nigrum GV (XecnGV) (178,733 pb) and the Pseudaletia unipuncta GV (PsunGV) (176,677 pb) genomes. The TnGV genome has a 39.81% C+G content and a total of 180 ORFs were identified, 96 of them in the granulin gene direction and 84 in the opposite direction. A total of 94.38% of the ORFs showed high identity with those of ClanGV, HaGV, and SlGV. Eight homologous regions (hrs) were identified as well as one apoptosis inhibitor (IAP-3). Interestingly, three viral enhancing factors (VEFs) were located in TnGV genome: VEF-1 (orf153), VEF-3 (orf155), and VEF-4 (orf164), additional to another metalloprotease (orf37). Two ORFs were unique to TnGV (orf100 and orf101) and another one was shared by only TnGV and AgseGV (orf2). Eleven of the deduced proteins showed high identity with proteins from nucleopolyhedroviruses, three with proteins from ascoviruses, and one with an entomopoxvirus protein. The largest deduced protein contains 1,213 amino acids (orf43) and the smallest deduced protein contains only 50 amino acids (orf143). Sequence identity and phylogenetic analyses showed that the closest related genomes to TnGV are, to date, those of PsunGV and XecnGV. This genome analysis may contribute to functional research on TnGV, and may form the bases for the utilization of this betabaculovirus as a pest control agent.


Asunto(s)
Baculoviridae/clasificación , Baculoviridae/genética , Genoma Viral , Genómica , Lepidópteros/virología , Animales , Baculoviridae/aislamiento & purificación , Composición de Base , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ADN , Homología de Secuencia , Sintenía , Proteínas Virales/genética , Factores de Virulencia/genética
17.
Dis Aquat Organ ; 125(3): 199-206, 2017 08 09.
Artículo en Inglés | MEDLINE | ID: mdl-28792418

RESUMEN

The farming of the black tiger shrimp Penaeus monodon in the Philippines relies on wild broodstock. PCR was thus used to determine the prevalence of white spot syndrome virus (WSSV), monodon baculovirus (MBV) and Penaeus stylirostris densovirus (PstDV) in a total of 178 shrimp from 6 geographically disparate locations where broodstock are captured for use in hatcheries. PCR amplicons were also sequenced to identify phylogenetic relationships of the virus haplotypes detected. Shrimp from southeastern Luzon (Camarines Norte) had the highest prevalence of each of the 3 viruses and were frequently co-infected with 2 or more viruses. No viruses were detected in shrimp from northwestern Luzon (Pangasinan). MBV was most prevalent and PstDV strains displayed the most genetic diversity. WSSV was detected at 3 sites, and a VP28 gene sequence examined was invariant and consistent with strains found in many countries, including Thailand, China, Japan, Korea, Indonesia, Iran, Brazil and Mexico. WSSV open reading frame 94 gene sequence analysis identified location-specific repeat types. MBV sequences were dissimilar to haplotypes detected in India. PstDV sequences were diverse and included 2 lineages detected either in Australia or in the United States, Ecuador, Taiwan, China and Vietnam. The PCR data confirmed that WSSV, MBV and PstDV are endemic in P. monodon in the Philippines but that populations at some locations might remain free of infection.


Asunto(s)
Animales Salvajes , Baculoviridae/genética , Densovirus/genética , Variación Genética , Penaeidae/virología , Virus del Síndrome de la Mancha Blanca 1/genética , Animales , Baculoviridae/aislamiento & purificación , Densovirus/aislamiento & purificación , Genoma Viral , Interacciones Huésped-Patógeno , Filipinas , Filogenia , Virus del Síndrome de la Mancha Blanca 1/aislamiento & purificación
18.
J Nanobiotechnology ; 15(1): 37, 2017 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-28477617

RESUMEN

BACKGROUND: Quantum dot (QD)-based single virus tracking has become a powerful tool for dissecting virus infection mechanism. However, only virus behaviors at the early stage of retrograde trafficking have been dynamically tracked so far. Monitoring of comprehensive virus retrograde transportation remains a challenge. RESULTS: Based on the superior fluorescence properties of QDs and their labeling of virus internal component, the dynamic interactions between baculoviruses and all key transportation-related cellular structures, including vesicles, acidic endosomes, actins, nuclear pores and nuclei, were visualized at the single-virus level. Detailed scenarios and dynamic information were provided for these critical interaction processes. CONCLUSIONS: A comprehensive model of baculovirus retrograde trafficking involving virus endocytosis, fusion with acidic endosome, translocation to nuclear periphery, internalization into nucleus, and arriving at the destination in nucleus was proposed. Thus the whole retrograde transportation of baculovirus in live host cells was elucidated at the single-virus level for the first time.


Asunto(s)
Baculoviridae/aislamiento & purificación , Baculoviridae/fisiología , Endosomas/virología , Colorantes Fluorescentes/análisis , Insectos/virología , Imagen Óptica , Puntos Cuánticos/análisis , Animales , Transporte Biológico , Línea Celular , Endocitosis , Fluorescencia , Microscopía Fluorescente , Internalización del Virus
19.
BMC Genomics ; 17: 94, 2016 Feb 04.
Artículo en Inglés | MEDLINE | ID: mdl-26847652

RESUMEN

BACKGROUND: A betabaculovirus (DisaGV) was isolated from Diatraea saccharalis (Lepidoptera: Crambidae), one of the most important insect pests of the sugarcane and other monocot cultures in Brazil. RESULTS: The complete genome sequence of DisaGV was determined using the 454-pyrosequencing method. The genome was 98,392 bp long, which makes it the smallest lepidopteran-infecting baculovirus sequenced to date. It had a G + C content of 29.7% encoding 125 putative open reading frames (ORF). All the 37 baculovirus core genes and a set of 19 betabaculovirus-specific genes were found. A group of 13 putative genes was not found in any other baculovirus genome sequenced so far. A phylogenetic analysis indicated that DisaGV is a member of Betabaculovirus genus and that it is a sister group to a cluster formed by ChocGV, ErelGV, PiraGV isolates, ClanGV, CaLGV, CpGV, CrleGV, AdorGV, PhopGV and EpapGV. Surprisingly, we found in the DisaGV genome a G protein-coupled receptor related to lepidopteran and other insect virus genes and a gp64 homolog, which is likely a product of horizontal gene transfer from Group 1 alphabaculoviruses. CONCLUSION: DisaGV represents a distinct lineage of the genus Betabaculovirus. It is closely related to the CpGV-related group and presents the smallest genome in size so far. Remarkably, we found a homolog of gp64, which was reported solely in group 1 alphabaculovirus genomes so far.


Asunto(s)
Baculoviridae/genética , Proteínas del Envoltorio Viral/genética , Baculoviridae/clasificación , Baculoviridae/aislamiento & purificación , Baculoviridae/ultraestructura , Composición de Base , Secuencia de Bases , Brasil , Orden Génico , Genoma Viral , Genómica , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Filogenia , Saccharum/virología , Proteínas del Envoltorio Viral/química , Proteínas Virales/genética
20.
Methods Mol Biol ; 1350: 95-116, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26820855

RESUMEN

BacMams are modified baculoviruses that contain mammalian expression cassettes for gene delivery and expression in mammalian cells. BacMams have become an integral part of the recombinant mammalian gene expression toolbox in research labs worldwide. Construction of transfer vectors is straightforward using basic molecular biology protocols. Virus generation is based on common methods used with the baculovirus insect cell expression system. BacMam transduction of mammalian cells requires minimal modifications to familiar cell culture methods. This chapter highlights the BacMam transfer vector pHTBV.


Asunto(s)
Baculoviridae/genética , Ingeniería Genética/métodos , Animales , Baculoviridae/aislamiento & purificación , Células CHO , Clonación Molecular , Cricetinae , Cricetulus , Enzimas de Restricción del ADN/genética , ADN Complementario/genética , Expresión Génica , Vectores Genéticos/genética , Células HEK293 , Humanos , Técnicas de Amplificación de Ácido Nucleico , Células Sf9 , Spodoptera , Transformación Genética
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