Molecular identification of whales remains from the Keller Peninsula, Admiralty Bay, King George Island, Antarctica.

At the beginning of the 20th century, intense whaling activity took place in the South Shetland Islands, which is represented today in the form of ruins and numerous whale bones scattered along several Antarctic beaches. Despite being exposed to a harsh environment throughout the last decades, the present manuscript tried to answer if these bone remains still have viable DNA to allow species' identification using molecular methods. Several individuals were collected from the shores of Keller Peninsula, Admiralty Bay, Antarctica, and submitted to DNA extraction, amplification and Sanger sequencing. The challenging identification of these bone fragments proved to be still feasible. Mitochondrial DNA was successfully extracted, amplified and sequenced. A database with 43 sequences including previously published and newly determined sequences were built and enabled the precise identification to species level for some of the collected samples, therefore shedding light on the whales species that inhabited the region and how their overexploitation seems to have affected modern day presence of these species within the study area.

A heavyweight early whale pushes the boundaries of vertebrate morphology.

The fossil record of cetaceans documents how terrestrial animals acquired extreme adaptations and transitioned to a fully aquatic lifestyle1,2. In whales, this is associated with a substantial increase in maximum body size. Although an elongate body was acquired early in cetacean evolution3, the maximum body mass of baleen whales reflects a recent diversification that culminated in the blue whale4. More generally, hitherto known gigantism among aquatic tetrapods evolved within pelagic, active swimmers. Here we describe Perucetus colossus-a basilosaurid whale from the middle Eocene epoch of Peru. It displays, to our knowledge, the highest degree of bone mass increase known to date, an adaptation associated with shallow diving5. The estimated skeletal mass of P. colossus exceeds that of any known mammal or aquatic vertebrate. We show that the bone structure specializations of aquatic mammals are reflected in the scaling of skeletal fraction (skeletal mass versus whole-body mass) across the entire disparity of amniotes. We use the skeletal fraction to estimate the body mass of P. colossus, which proves to be a contender for the title of heaviest animal on record. Cetacean peak body mass had already been reached around 30 million years before previously assumed, in a coastal context in which primary productivity was particularly high.

Diversity and Distribution Patterns of Cetaceans in the Subtropical Southwestern Atlantic Outer Continental Shelf and Slope.

Temporal and spatial patterns of cetacean diversity and distribution were investigated through eight ship-based surveys carried out during spring and autumn between 2009 and 2014 on the outer continental shelf (~150m) and slope (1500m) off southeastern and southern Brazil (~23°S to ~34°S). The survey area was divided into southeast and south areas according to their oceanographic characteristics. Twenty-one species were observed in 503 sightings. The overall number of species was similar between the two areas, though it was higher in the spring in the south area. Five species were dominant and diversity varied more seasonally than spatially. ANOVA and kernel analyses showed that overall cetacean densities were higher in spring compared to autumn. Physeter macrocephalus, the most frequent species, concentrated throughout the south area at depths over 1000m in both seasons. Despite the overlapped occurrence at a broader scale, small delphinids presented latitudinal and in-offshore gradients as well as seasonal variation in distribution patterns, which could indicate habitat partitioning between some species. Delphinus delphis was only recorded in the south and its density decreased in areas where the presence of Stenella frontalis increased, mainly beyond the 250m isobath. Densities of S. longirostris and S. attenuata increased in lower latitudes and beyond the shelf break. The large delphinids Tursiops truncatus and Globicephala melas formed mixed groups in many occasions and were observed along the study area around depths of 500m. Grampus griseus was twice as frequent in the south area and densities increased in waters deeper than 600m. As expected, densities of both small and large migratory whales were higher during spring, over the continental slope, in the southeast area. The results presented here provided strong evidence on the importance of the outer continental shelf and slope to a diverse community of cetaceans occurring in the subtropical Southwestern Atlantic.

Stranding Events of Kogia Whales along the Brazilian Coast.

The genus Kogia, which comprises only two extant species, Kogia sima and Kogia breviceps, represents one of the least known groups of cetaceans in the global ocean. In some coastal regions, however, stranding events of these species have been relatively common over the last decades. Stranding provides the opportunity to investigate the biology of these cetaceans and to explore the epidemiological aspects associated with the mortality of the organisms found on the beach. A number of disturbances (including pelagic fisheries, chemical pollution, boat strikes, and noise pollution) have been confirmed to pose a particular threat to the Kogia species. However, no study has yet investigated potential relationships between environmental conditions and stranding events. Here we analyse how a collection of environmental, physical, and biological variables, such as wind, sea surface temperature (SST), water depth, and chlorophyll-a, correlate to Kogia stranding events along the Brazilian coast. The results of our statistical analyses suggest that K. sima is more likely found in warm tropical waters, which provide an explanation for the high frequency of stranding in northeastern Brazilian coast. In contrast, K. breviceps appears to have a preference for temperate and productive waters. Wind speed results to be also an important factor for predicting Kogia strandings in Brazilian coast. Additionally, literature information in combination with our own data and analyses of stomach contents confirms that oceanic cephalopods constitute the primary nutritional source of both Kogia species. By using the available information as a qualitative proxy for habitat preference and feeding ecology, our study provides a novel and comprehensive assessment of Kogia stranding data in relation to environmental conditions along the Brazilian coast.

Occurrence and distribution patterns of several marine vertebrates in Golfo Dulce, Costa Rica / Patrones de presencia y distribución de vertebrados marinos en el Golfo Dulce

Abstract Within the months of January-February 2010 and July-August 2011, 55 daily sighting surveys were conducted in Golfo Dulce, a tropical fiord-like embayment in the South Pacific region of Costa Rica. The research objective was to collect baseline data on several marine vertebrates that enter or reside in the Gulf and determine spatial distribution during the study periods. Sighting surveys mainly focused on whales, dolphins, sea turtles and sea snakes. A total of 458 recorded sightings, representing at least 30 marine species, were acquired during 423.7 observation hours across all areas of the embayment. These data, along with information garnered from 82 interviews with local fishermen and tour boat guides, confirmed a wide array of marine species utilizing the inlet for the purposes of foraging, mating, resting and socializing. GIS analyses allowed comparisons of spatial distribution and revealed high-density areas for marine fauna within Golfo Dulce. Rev. Biol. Trop. 63 (Suppl. 1): 261-272. Epub 2015 April 01.

Resumen Durante los meses de enero-febrero del 2010 y julio-agosto del 2011, se realizaron 55 muestreos de avistamientos diarios en el Golfo Dulce, una ensenada considerada un fiordo tropical en la región del Pacífico Sur de Costa Rica. El objetivo de la investigación fue recolectar datos de línea base en relación con las especies marinas que entran o residen en el Golfo, incluida la distribución espacial durante los períodos de estudio. El enfoque principal del estudio fue en especies de ballenas, delfines, tortugas marinas y serpientes marinas; sin embargo, se registraron observaciones de otras especies. Se documentaron un total de 458 avistamientos, que representan por lo menos 30 especies marinas, durante 423.7h de observación en todas las áreas del Golfo. Estos datos, junto con la información obtenida a partir de 82 entrevistas a pescadores locales y guías de barcos turísticos, sugieren que una gran variedad de vertebrados marinos utilizan el Golfo con el propósito de buscar alimento, aparearse, descansar y socializar. El análisis de los datos mediante SIG permite la comparación de la distribución espacial, la cual reveló áreas de alta densidad de fauna marina en el Golfo Dulce.

Whales from space: counting southern right whales by satellite.

We describe a method of identifying and counting whales using very high resolution satellite imagery through the example of southern right whales breeding in part of the Golfo Nuevo, Península Valdés in Argentina. Southern right whales have been extensively hunted over the last 300 years and although numbers have recovered from near extinction in the early 20(th) century, current populations are fragmented and are estimated at only a small fraction of pre-hunting total. Recent extreme right whale calf mortality events at Península Valdés, which constitutes the largest single population, have raised fresh concern for the future of the species. The WorldView2 satellite has a maximum 50 cm resolution and a water penetrating coastal band in the far-blue part of the spectrum that allows it to see deeper into the water column. Using an image covering 113 km², we identified 55 probable whales and 23 other features that are possibly whales, with a further 13 objects that are only detected by the coastal band. Comparison of a number of classification techniques, to automatically detect whale-like objects, showed that a simple thresholding technique of the panchromatic and coastal band delivered the best results. This is the first successful study using satellite imagery to count whales; a pragmatic, transferable method using this rapidly advancing technology that has major implications for future surveys of cetacean populations.

Accelerated evolutionary rate of the myoglobin gene in long-diving whales.

Cetaceans, early in their evolutionary history, had developed many physiological adaptations to secondarily return to the sea. Among these adaptations, changes in molecules that transport oxygen and that ultimately support large periods of acute tissue hypoxia probably represent one big step toward the conquest of aquatic environments. Myoglobin contributes to intracellular oxygen storage and transcellular diffusion of oxygen in muscle, and plays an important role in supplying oxygen in hypoxic or ischemic conditions. Here we looked for evidence of adaptive molecular evolution of myoglobin in the cetacean lineage, relative to their terrestrial counterparts. We performed a comparative analysis to examine the variation of the parameter ω (d N/d S) and infer past period of adaptive evolution during the cetacean transition from the terrestrial to the aquatic environment. We also analyzed the changes in amino acid properties. At the nucleotide level, the results showed significant differences in selective pressure between cetacean and non-cetacean myoglobin (ω value three times higher in cetaceans when compared to terrestrial mammals), and also among cetacean lineages according to their diving capacities. Interestingly, both families with long duration diving cetaceans present two parallel substitutions (on sites 4 and 12). Regarding the amino acid properties, our analysis identified four significant physicochemical amino acid changes among residues in myoglobin protein under positive destabilizing selection.

[Inshore cetaceans from the North and South Pacific coast of Costa Rica]. / Cetáceos de las aguas costeras del Pacífico norte y sur de Costa Rica.

Twenty nine cetacean species occur in Costa Rican waters but extensive research has been conducted only for three species. The latter shows there is a lack of general and local information about these mammals, even when the country, has shown a remarkable growth in whale watching activities. The increasing use of marine resources in coastal areas has also developed the need to determine the occurrence of cetaceans in areas showing high tourist presence, in order to propose sound conservation measures. In this study, environmental variables were determined and subsequently related to the presence of the species recorded, out of 166 sightings, between 2005 and 2006. The species with highest proportion of sightings were Stenella attenuata (68%), followed by Megaptera novaeangliae (13%) and Tursiops truncatus (10%). The presence of spotted dolphins is related to changes in salinity and water transparency, while that of the humpback whale was related to wave height (Beaufort scale) and water temperature. The presence of seven species of cetaceans was confirmed in two coastal areas of the Pacific coast of Costa Rica, from which three are present throughout the year. Environmental variables were found related to the presence of at least two species.

Cetáceos de las aguas costeras del Pacífico norte y sur de Costa Rica

Inshore cetaceans from the North and South Pacific coast of Costa Rica. Twenty nine cetacean species occur in Costa Rican waters but extensive research has been conducted only for three species. The latter shows there is a lack of general and local information about these mammals, even when the country, has shown a remarkable growth in whale watching activities. The increasing use of marine resources in coastal areas has also developed the need to determine the occurrence of cetaceans in areas showing high tourist presence, in order to propose sound conservation measures. In this study, environmental variables were determined and subsequently related to the presence of the species recorded, out of 166 sightings, between 2005 and 2006. The species with highest proportion of sightings were Stenella attenuata (68%), followed by Megaptera novaeangliae (13%) and Tursiops truncatus (10%). The presence of spotted dolphins is related to changes in salinity and water transparency, while that of the humpback whale was related to wave height (Beaufort scale) and water temperature. The presence of seven species of cetaceans was confirmed in two coastal areas of the Pacific coast of Costa Rica, from which three are present throughout the year. Environmental variables were found related to the presence of at least two species. Rev. Biol. Trop. 59 (1): 283-290. Epub 2011 March 01.

De las 29 especies de cetáceos presentes en Costa Rica, se han realizado investigaciones exhaustivas solamente para tres especies. Lo anterior evidencia la poca información general existente sobre cetáceos, a pesar de que Costa Rica posee un notable crecimiento de actividades de avistamiento. Debido al uso que se está generando en las zonas costeras, cada vez se hace más necesario determinar la ocurrencia de cetáceos en zonas de alta actividad turística, con el fin de proponer medidas de conservación. En el presente estudio, se determinaron variables ambientales que estaban relacionadas con la presencia de especies registradas, a partir de 166 avistamientos entre el 2005 y 2006. Las especies con mayor proporción de avistamientos fueron Stenella attenuata (68%), seguida por Megaptera novaeangliae (13%) y Tursiops truncatus (10%). La presencia del delfín manchado se relaciona con cambios de salinidad y trasparencia del agua, mientras que la de la ballena jorobada estuvo relacionada con el oleaje y la temperatura superficial del agua. Se confirma la presencia de 7 especies de cetáceos en dos zonas costeras del Pacífico de Costa Rica, de las cuales tres están presentes a lo largo del año. Se encontraron variables ambientales relacionadas con la presencia de al menos dos especies.

Whales, dolphins or fishes? The ethnotaxonomy of cetaceans in São Sebastião, Brazil.

The local knowledge of human populations about the natural world has been addressed through ethnobiological studies, especially concerning resources uses and their management. Several criteria, such as morphology, ecology, behavior, utility and salience, have been used by local communities to classify plants and animals. Studies regarding fishers' knowledge on cetaceans in the world, especially in Brazil, began in the last decade. Our objective is to investigate the folk classification by fishers concerning cetaceans, and the contribution of fishers' local knowledge to the conservation of that group. In particular, we aim to record fishers' knowledge in relation to cetaceans, with emphasis on folk taxonomy. The studied area is São Sebastião, located in the southeastern coast of Brazil, where 70 fishers from 14 communities were selected according to their fishing experience and interviewed through questionnaires about classification, nomenclature and ecological aspects of local cetaceans' species. Our results indicated that most fishers classified cetaceans as belonging to the life-form 'fish'. Fishers' citations for the nomenclature of the 11 biological species (10 biological genera), resulted in 14 folk species (3 generic names). Fishers' taxonomy was influenced mostly by the phenotypic and cultural salience of the studied cetaceans. Cultural transmission, vertical and horizontal, was intimately linked to fishers' classification process. The most salient species, therefore well recognized and named, were those most often caught by gillnets, in addition to the biggest ones and those most exposed by media, through TV programs, which were watched and mentioned by fishers. Our results showed that fishers' ecological knowledge could be a valuable contribution to cetaceans' conservation, helping to determine areas and periods for their protection, indicating priority topics for research and participating in alternative management related to the gillnet fisheries.

Patterns of cetacean sighting distribution in the Pacific Exclusive Economic Zone of Costa Rica based on data collected from 1979-2001

Nineteen species of cetaceans (families Balaenopteridae, Kogiidae, Physeteridae, Ziphiidae and Delphinidae) occur in the Costa Rican Pacific Exclusive Economic Zone (EEZ). Based on data recorded from the EEZ by the Southwest Fisheries Service Center, Cascadia Research Collective, and CIMAR between 1979- 2001, we mapped the distribution of 18 cetacean species. Our results suggest that the majority of the cetacean species use primarily oceanic waters, particularly those species within the families Balaenopteridae, Kogiidae, Physeteridae and Ziphiidae. Members of the family Delphinidae showed a wide variety of distribution patterns: seven species are widespread throughout the EEZ, four appear to be exclusively pelagic, and two are primarily coastal. Overall, three cetacean species appear to have populations concentrated in coastal waters: Stenella attenuata graffmani, Tursiops truncatus, and Megaptera novaeangliae. These three may be more susceptible to human activities due to the overlap of their ranges with fishery areas (tuna and artisanal fisheries), and an uncontrolled increase of touristic whale watching activities in several parts of their range. The distribution maps represent the first comprehensive representation of cetacean species that inhabit Costa Rican Pacific waters. They provide essential base-line information that may be used to initiate conservation and management efforts of the habitats where these animals reproduce and forage

Diecinueve especies de cetáceos distribuídos en cinco familias (Balaenopteridae, Kogiidae, Physeteridae, Ziphiidae and Delphinidae) habitan en la Zona Económica Exclusiva del Pacífico de Costa Rica (ZEEP). Con base a datos tomados en esta zona por el Southwest Fisheries Service Center, Cascadia Research Collective y CIMAR entre 1979 y 2001 construímos mapas de distribución de avistamientos para 18 especies. Nuestros resultados sugieren que la mayoría de las especies de cetáceos habitan en aguas oceánicas, particularmente miembros de las familias Balaenopteridae, Kogiidae, Physeteridae y Ziphiidae. Miembros de la familia Delphinidae mostraron una variedad de patrones de distribución, siete mostraron una distribución amplia en el ZEEP, cuatro parecen ser exclusivamente oceánicas y dos principalmente costeras. Adicionalmente, tres especies de cetáceos tienen poblaciones concentradas en la costa: Stenella attenuata graffmani, Tursiops truncatus y Megaptera novaeangliae. Estas tres especies son por lo tanto más suceptibles debido a que su hábitat traslapa considerablemnte con áreas importantes para la pesca artesanal y atunera, y áreas de observación de ballenas (las cuales a incrementado considerablemente en los últimos años). Los mapas de distribución de avistamientos de cetáceos presentados en este trabajo son los primeros en su tipo para Costa Rica. Estos aportan información esencial y básica para iniciativas de conservación y manejo de estos animals y los habitats donde estos se reproducen y alimentan

Patterns of cetacean sighting distribution in the Pacific exclusive economic zone of Costa Rica based on data collected from 1979-2001.

Nineteen species of cetaceans (families Balaenopteridae, Kogiidae, Physeteridae, Ziphiidae and Delphinidae) occur in the Costa Rican Pacific Exclusive Economic Zone (EEZ). Based on data recorded from the EEZ by the Southwest Fisheries Service Center, Cascadia Research Collective, and CIMAR between 1979-2001, we mapped the distribution of 18 cetacean species. Our results suggest that the majority of the cetacean species use primarily oceanic waters, particularly those species within the families Balaenopteridae, Kogiidae. Physeteridae and Ziphiidae. Members of the family Delphinidae showed a wide variety of distribution patterns: seven species are widespread throughout the EEZ, four appear to be exclusively pelagic, and two are primarily coastal. Overall, three cetacean species appear to have populations concentrated in coastal waters: Stenella attenuata graffmani. Tursiops truncatus, and Megaptera novaeangliae. These three may be more susceptible to human activities due to the overlap of their ranges with fishery areas (tuna and artisanal fisheries), and an uncontrolled increase of touristic whale watching activities in several parts of their range. The distribution maps represent the first comprehensive representation of cetacean species that inhabit Costa Rican Pacific waters. They provide essential base-line information that may be used to initiate conservation and management efforts of the habitats where these animals reproduce and forage.