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1.
Viruses ; 13(2)2021 02 20.
Artículo en Inglés | MEDLINE | ID: mdl-33672786

RESUMEN

Human bocavirus 1 (HBoV1) has gained attention as a gene delivery vector with its ability to infect polarized human airway epithelia and 5.5 kb genome packaging capacity. Gorilla bocavirus 1 (GBoV1) VP3 shares 86% amino acid sequence identity with HBoV1 but has better transduction efficiency in several human cell types. Here, we report the capsid structure of GBoV1 determined to 2.76 Å resolution using cryo-electron microscopy (cryo-EM) and its interaction with mouse monoclonal antibodies (mAbs) and human sera. GBoV1 shares capsid surface morphologies with other parvoviruses, with a channel at the 5-fold symmetry axis, protrusions surrounding the 3-fold axis and a depression at the 2-fold axis. A 2/5-fold wall separates the 2-fold and 5-fold axes. Compared to HBoV1, differences are localized to the 3-fold protrusions. Consistently, native dot immunoblots and cryo-EM showed cross-reactivity and binding, respectively, by a 5-fold targeted HBoV1 mAb, 15C6. Surprisingly, recognition was observed for one out of three 3-fold targeted mAbs, 12C1, indicating some structural similarity at this region. In addition, GBoV1, tested against 40 human sera, showed the similar rates of seropositivity as HBoV1. Immunogenic reactivity against parvoviral vectors is a significant barrier to efficient gene delivery. This study is a step towards optimizing bocaparvovirus vectors with antibody escape properties.


Asunto(s)
Anticuerpos Antivirales/inmunología , Bocavirus/ultraestructura , Cápside/ultraestructura , Gorilla gorilla/virología , Animales , Anticuerpos Monoclonales/inmunología , Bocavirus/clasificación , Bocavirus/genética , Bocavirus/inmunología , Cápside/inmunología , Reacciones Cruzadas , Microscopía por Crioelectrón , Bocavirus Humano/inmunología , Humanos
2.
Mol Cell Probes ; 53: 101647, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32777447

RESUMEN

Feline bocavirus-1 (FBoV-1) was first discovered in Hong Kong in 2012, and studies have indicated that the virus may cause feline hemorrhagic enteritis. Currently, there is a lack of an effective and quantitative method for FBoV-1 detection. In this study, a TaqMan-based quantitative real-time PCR (qPCR) for FBoV-1 detection was established. Primers and probes were designed to target the conserved region of the FBoV-1 NS1 gene. The sensitivity analysis indicated that the minimum detection limit was 4.57 × 101 copies/µL. The specificity test revealed no cross-reaction with seven other common feline viruses, including the same species-FBoV-2 and FBoV-3. The sensitivity of this method was 100 times higher than that of conventional PCR (cPCR). The established method showed good repeatability, with the intra-assay and inter-assay coefficients of variation of 0.18%-1.00% and 0.27%-0.45%, respectively. Furthermore, the analysis of feline feces revealed that the detection rate by qPCR was 7.0% (9/128), whereas that by cPCR was 4.7% (6/128). In conclusion, the established qPCR assay can quantitatively detect FBoV-1 with a high sensitivity, high specificity, and good reproducibility, making it a promising technique for the clinical detection of and basic and epidemiological research on FBoV-1.


Asunto(s)
Bocavirus/aislamiento & purificación , Enfermedades de los Gatos/virología , Infecciones por Parvoviridae/diagnóstico , Proteínas no Estructurales Virales/genética , Animales , Bocavirus/clasificación , Bocavirus/genética , Gatos , Enteritis/virología , Heces/virología , Límite de Detección , Infecciones por Parvoviridae/veterinaria , Reacción en Cadena en Tiempo Real de la Polimerasa
3.
Infect Genet Evol ; 85: 104421, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32580027

RESUMEN

Crab-eating (Cerdocyon thous) and Pampas foxes (Lycalopex gymnocercus) are wild canids distributed in South America. Domestic dogs (Canis lupus familiaris) and wild canids may share viral pathogens, including rabies virus (RABV), canine distemper virus (CDV), and canine parvovirus 2 (CPV-2). To characterize the virome of these wild canid species, the present work evaluated the spleen and mesenteric lymph node virome of 17 crab-eating and five Pampas foxes using high-throughput sequencing (HTS). Organ samples were pooled and sequenced using an Illumina MiSeq platform. Additional PCR analyses were performed to identify the frequencies and host origin for each virus detected by HTS. Sequences more closely related to the Paramyxoviridae, Parvoviridae and Anelloviridae families were detected, as well as circular Rep-encoding single-stranded (CRESS) DNA viruses. CDV was found only in crab-eating foxes, whereas CPV-2 was found in both canid species; both viruses were closely related to sequences reported in domestic dogs from southern Brazil. Moreover, the present work reported the detection of canine bocavirus (CBoV) strains that were genetically divergent from CBoV-1 and 2 lineages. Finally, we also characterized CRESS DNA viruses and anelloviruses with marked diversity. The results of this study contribute to the body of knowledge regarding wild canid viruses that can potentially be shared with domestic canids or other species.


Asunto(s)
Perros/virología , Zorros/virología , Viroma , Virus/clasificación , Virus/genética , Anelloviridae/clasificación , Anelloviridae/genética , Animales , Bocavirus/clasificación , Bocavirus/genética , Brasil , Virus ADN/clasificación , Virus ADN/genética , ADN Viral , Virus del Moquillo Canino/clasificación , Virus del Moquillo Canino/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Ganglios Linfáticos/virología , Metagenómica , Paramyxoviridae/clasificación , Paramyxoviridae/genética , Parvoviridae/clasificación , Parvoviridae/genética , Parvovirus Canino/clasificación , Parvovirus Canino/genética , Filogenia , ARN Viral , Bazo/virología , Uruguay , Virosis/veterinaria , Virosis/virología , Virus/aislamiento & purificación
4.
Viruses ; 12(5)2020 05 04.
Artículo en Inglés | MEDLINE | ID: mdl-32375386

RESUMEN

An unexplained outbreak of feline diarrhea and vomiting, negative for common enteric viral and bacterial pathogens, was subjected to viral metagenomics and PCR. We characterized from fecal samples the genome of a novel chapparvovirus we named fechavirus that was shed by 8/17 affected cats and identified three different feline bocaviruses shed by 9/17 cats. Also detected were nucleic acids from attenuated vaccine viruses, members of the normal feline virome, viruses found in only one or two cases, and viruses likely derived from ingested food products. Epidemiological investigation of disease signs, time of onset, and transfers of affected cats between three facilities support a possible role for this new chapparvovirus in a highly contagious feline diarrhea and vomiting disease.


Asunto(s)
Bocavirus/aislamiento & purificación , Enfermedades de los Gatos/virología , Diarrea/veterinaria , Parvovirinae/aislamiento & purificación , Viroma , Vómitos/veterinaria , Animales , Bocavirus/clasificación , Bocavirus/genética , Bocavirus/fisiología , Colombia Británica/epidemiología , Enfermedades de los Gatos/epidemiología , Gatos , Diarrea/epidemiología , Diarrea/virología , Brotes de Enfermedades , Heces/virología , Femenino , Genoma Viral , Masculino , Parvovirinae/clasificación , Parvovirinae/genética , Parvovirinae/fisiología , Filogenia , Vómitos/epidemiología , Vómitos/virología
5.
Arch Virol ; 165(6): 1469-1474, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-32388598

RESUMEN

In December 2017, a squirrel (Callosciurus phayrei) died 2 days after capture in Kunming, and its intestinal tract, heart, liver, spleen, lung, and kidney were subjected to metagenomics analysis. Reassembly and verification by reverse transcription PCR of contigs generated by next-generation sequencing yielded a 5176-nt sequence, which was designated "squirrel bocaparvovirus" (SQBOV). Phylogenetic trees based on the aa sequences of NS1, NP1, and VP1 showed that SQBOV formed an independent branch in the bocaparvovirus phylogenetic tree. The amino acid sequence identity of the NS1 of SQBOV to those of other bocaparvoviruses was below the threshold of 85% that is used to demarcate species within the genus, indicating that it should be considered a member of a new bocaparvovirus species. To our knowledge, this is the first report of a bocaparvovirus in squirrels. Our findings will enable further studies of viral diversity in rodents and of the genetic diversity and host range of bocaparvoviruses.


Asunto(s)
Bocavirus/clasificación , Bocavirus/aislamiento & purificación , Infecciones por Parvoviridae/veterinaria , Infecciones por Parvoviridae/virología , Sciuridae/virología , Secuencia de Aminoácidos , Animales , China , Genoma Viral , Secuenciación de Nucleótidos de Alto Rendimiento , Metagenómica , Filogenia , Reacción en Cadena de la Polimerasa , Análisis de Secuencia de ADN
6.
Virus Genes ; 56(3): 306-315, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-32020392

RESUMEN

Mink bocavirus 1 (MiBoV1), a novel virus detected from the feces of domestic minks in China in 2016, may be related to gastrointestinal diseases. However, its prevalence and genetic characteristics are poorly described. In this study, we examined 192 samples collected from minks in the major mink industry province from northern China. PCR results showed that 10 samples (5.2%) were positive for MiBoV1, and 60% of MiBoV1-positive samples were co-infected with Aleutian mink disease virus or mink circovirus. MiBoV1 was detected in six serum samples. Sequence analysis demonstrated that the VP2 gene of MiBoV1 was highly conserved and had low viral diversity over the VP2 region and unique nucleotide mutations. Phylogenetic analysis of the VP2 sequence demonstrated that MiBoV1 strains formed two clades and were grouped with California sea lion bocavirus, Canine bocavirus, and Feline bocavirus. Codon usage analysis revealed that most of the preferentially used codons in MiBoV1 were A- or U-ended codons, and no evident codon usage bias was found. This study provides evidence that MiBoV1 has a low prevalence in Jilin and Hebei provinces in China. Moreover, it contributes information regarding the expansion of the limited mink bocavirus sequence and determines the codon usage bias of the VP2 gene for the first time. Epidemiological surveillance is necessary to understand the importance and evolution of MiBoV1.


Asunto(s)
Bocavirus/genética , Proteínas de la Cápside/genética , Uso de Codones , Visón/virología , Sustitución de Aminoácidos , Enfermedades de los Animales/diagnóstico , Enfermedades de los Animales/virología , Animales , Bocavirus/clasificación , Codón , Mutación , Infecciones por Parvoviridae/veterinaria , Filogenia
7.
Virol Sin ; 35(1): 34-42, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31552610

RESUMEN

Primate bocaparvovirus (BOV) is a possible cause of respiratory disorders and gastroenteritis in humans. However, the diversity and evolution of these viruses remain largely unknown, despite the identification of a growing number of BOVs in non-human primates (NHPs). Here, we report the identification of a novel BOV (provisionally named Macaca mulatta bocaparvovirus [MmBOV]) in the feces of wild Macaca mulatta in China by viral metagenomic analysis. Seven of 400 fecal samples from Macaca mulatta were positive for MmBOV. An almost complete genome sequence of 4,831 nucleotides was obtained, which had genomic organization and protein motifs similar to human bocaviruses (HOBVs), and shared characteristically low G/C content and weak codon usage bias. Sequence analyses of NS1, NP1, and VP1 revealed that MmBOV was most closely related to HBOV4 of Primate bocaparvovirus 2 (approximately 68.4%/70.6%, 73.3%/67.6%, and 70.4%/73.1% nucleotide/amino acid identities, respectively). Additionally, phylogenetic analysis revealed that MmBOV formed an independent peripheral branch, but clustered closely with those of the Primate bocaparvovirus species in the BOV genus (particularly HBOV4). These data strongly suggest that HBOV4 originated from NHP bocaparvoviruses around 200-300 years ago, and that NHPs may act as HBOV reservoirs. Following the International Committee of Taxonomy for Viruses guidelines, we propose MmBOV as a new species (tentatively named Primate bocaparvovirus 3) in the genus Bocaparvovirus, which is the first report of a novel species of primate BOV. Our data facilitate future research on the genetic diversity and evolution of primate bocaparvoviruses and highlight the importance of bocaparvovirus surveys in wild NHPs.


Asunto(s)
Bocavirus/clasificación , Genoma Viral , Macaca mulatta/virología , Infecciones por Parvoviridae/veterinaria , Filogenia , Animales , Bocavirus/aislamiento & purificación , China/epidemiología , Heces/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Infecciones por Parvoviridae/epidemiología , Proteínas Virales/genética
8.
Sci Rep ; 9(1): 16367, 2019 11 08.
Artículo en Inglés | MEDLINE | ID: mdl-31705016

RESUMEN

Feline bocavirus-1 (FBoV-1) was identified in cats from different households with hemorrhagic enteritis during outbreaks of an unusual clinical presentation of feline panleukopenia virus (FPLV) in Thailand. Use of polymerase chain reaction revealed the presence of the FBoV-1 DNA in several tissues, suggesting hematogenous viremia, with the viral nucleic acid, detected by in situ hybridization (ISH), was localized in intestinal cells and vascular endothelium of intestinal mucosa and serosa, and in necrosis areas primarily in various lymph nodes while FPLV-immunohistochemical analysis revealed viral localization only in cryptal cells, neurons, and limited to leukocytes in the mesenteric lymph node. Full-length coding genome analysis of the Thai FBoV-1 strains isolated from moribund cats revealed three distinct strains with a high between-strain genetic diversity, while genetic recombination in one of the three FBoV-1 strains within the NS1 gene. This is the first report identifying natural genetic recombination of the FBoV-1 and describing the pathology and viral tropism of FBoV-1 infection in cats. Although the role of FBoV-1 associated with systemic infection of these cats remained undetermined, a contributory role of enteric infection of FBoV-1 is possible. Synergistic effects of dual infection with FPLV and FBoV-1 are hypothesized, suggesting more likely severe clinical presentations.


Asunto(s)
Bocavirus/aislamiento & purificación , Enfermedades de los Gatos/patología , Enteritis/veterinaria , Hemorragia Gastrointestinal/veterinaria , Infecciones por Parvoviridae/veterinaria , Recombinación Genética , Tropismo Viral , Animales , Bocavirus/clasificación , Bocavirus/genética , Enfermedades de los Gatos/epidemiología , Enfermedades de los Gatos/virología , Gatos , ADN Viral/análisis , Brotes de Enfermedades , Enteritis/epidemiología , Enteritis/virología , Hemorragia Gastrointestinal/epidemiología , Hemorragia Gastrointestinal/virología , Infecciones por Parvoviridae/epidemiología , Infecciones por Parvoviridae/virología , Filogenia , Tailandia/epidemiología
9.
Viruses ; 11(8)2019 07 31.
Artículo en Inglés | MEDLINE | ID: mdl-31370351

RESUMEN

Viruses belonging to the genus Bocaparvovirus(BoV) are a genetically diverse group of DNA viruses known to cause respiratory, enteric, and neurological diseases in animals, including humans. An intestinal sample from an alpaca (Vicugnapacos) herd with reoccurring diarrhea and respiratory disease was submitted for next-generation sequencing, revealing the presence of a BoV strain. The alpaca BoV strain (AlBoV) had a 58.58% whole genome nucleotide percent identity to a camel BoV from Dubai, belonging to a tentative ungulate BoV 8 species (UBoV8). Recombination events were lacking with other UBoV strains. The AlBoV genome was comprised of the NS1, NP1, and VP1 proteins. The NS1 protein had the highest amino acid percent identity range (57.89-67.85%) to the members of UBoV8, which was below the 85% cut-off set by the International Committee on Taxonomy of Viruses. The low NS1 amino acid identity suggests that AlBoV is a tentative new species. The whole genome, NS1, NP1, and VP1 phylogenetic trees illustrated distinct branching of AlBoV, sharing a common ancestor with UBoV8. Walker loop and Phospholipase A2 (PLA2) motifs that are vital for virus infectivity were identified in NS1 and VP1 proteins, respectively. Our study reports a novel BoV strain in an alpaca intestinal sample and highlights the need for additional BoV research.


Asunto(s)
Bocavirus/clasificación , Camélidos del Nuevo Mundo/virología , Genoma Viral , Filogenia , Animales , Bocavirus/aislamiento & purificación , Diarrea/virología , Heces/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Metagenómica , Infecciones por Parvoviridae/virología , Infecciones del Sistema Respiratorio/virología , Análisis de Secuencia de ADN , Estados Unidos
10.
Arch Virol ; 164(9): 2351-2354, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31222429

RESUMEN

Porcine bocavirus (PBoV), which belongs the genus Bocaparvovirus, has been identified throughout the world. However, serological methods for detecting anti-PBoV antibodies are presently limited. In the present study, an indirect enzyme-linked immunosorbent assay (PBoV-rNP1 ELISA) based on a recombinant form of nucleoprotein 1 (NP1) of PBoV was established for investigating the seroprevalence of PBoV in 2025 serum specimens collected in north-central China from 2016 to 2018, and 42.3% of the samples tested positive for anti-PBoV IgG antibodies, indicating that the seroprevalence of PBoV is high in pig populations in China.


Asunto(s)
Anticuerpos Antivirales/sangre , Bocavirus/aislamiento & purificación , Nucleoproteínas/inmunología , Infecciones por Parvoviridae/veterinaria , Enfermedades de los Porcinos/virología , Animales , Anticuerpos Antivirales/inmunología , Bocavirus/clasificación , Bocavirus/genética , China/epidemiología , Ensayo de Inmunoadsorción Enzimática , Nucleoproteínas/genética , Infecciones por Parvoviridae/sangre , Infecciones por Parvoviridae/epidemiología , Infecciones por Parvoviridae/virología , Filogenia , Estudios Seroepidemiológicos , Porcinos , Enfermedades de los Porcinos/sangre , Enfermedades de los Porcinos/diagnóstico , Enfermedades de los Porcinos/epidemiología
11.
Arch Virol ; 164(2): 601-605, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30488237

RESUMEN

In this study, we investigated the presence of canine bocaviruses (CBoVs) in fecal samples from 105 cats with diarrhea and 92 asymptomatic cats in northeast China. One fecal sample, 17CC0312, collected from an asymptomatic cat, was found to be positive for canine bocavirus 1 (CBoV1). The nearly complete genome of this virus was cloned and sequenced. The viral genome was 5,069 nucleotides (nt) in length and combined four open reading frames (ORFs) in the order 5'-NS1-ORF4-NP1-VP1/VP2-3'. The 17CC0312 virus shared more than 90.3% nucleotide sequence identity with CBoV1 reference sequences and was placed within the CBoV1 group in a phylogenetic tree based on complete genome sequences. Further phylogenetic analysis based on the deduced amino acid sequence of the VP2 gene showed that this feline CBoV1 strain belongs to CBoV1 lineage 3. These data provide the first molecular evidence of the presence of CBoV1 in a domestic cat and suggest that cats might be carriers of CBoV1.


Asunto(s)
Bocavirus/aislamiento & purificación , Enfermedades de los Gatos/virología , Genoma Viral , Infecciones por Parvoviridae/veterinaria , Animales , Secuencia de Bases , Bocavirus/clasificación , Bocavirus/genética , Gatos , China , Enfermedades de los Perros/virología , Perros , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Infecciones por Parvoviridae/virología , Filogenia
12.
Virol J ; 15(1): 125, 2018 08 08.
Artículo en Inglés | MEDLINE | ID: mdl-30089507

RESUMEN

BACKGROUND: Bocaviruses have been reported to cause respiratory tract infection and gastroenteritis in most animal species. In cats, different genotype bocaviruses have been identified in USA, Japan, Hong Kong and Portugal. However, the clear relationship between the clinical symptoms and FBoV infection is unknown, and the prevalence of FBoV and the distribution of FBoV genotypes in China are still unclear. RESULTS: In this study, 197 fecal samples from cats with diarrhea (n = 105) and normal cats (n = 92) were collected in different regions between January 2016 and November 2017 and investigated using PCR targeting different FBoV genotypes. Screening results showed that 51 of 197 samples (25.9%) were positive for FBoV, and a higher positive rate was observed in cats with diarrhea (33.3%, 35/105) than in normal cats (17.4%, 16/92). Of these FBoV-positive samples, 35 were identified as FBoV-1, 12 as FBoV-2 and 4 as coinfection of FBoV-1 and FBoV-2. A phylogenetic analysis based on partial NS1 gene indicated that 24 sequences from randomly selected FBoV-positive samples were divided into 2 different FBoV groups: FBoV-1 and FBoV-2. Furthermore, 6 strains were randomly selected, and the complete genome was sequenced and analyzed. These strains exhibited the typical genome organization of bocavirus and were closely related to FBoV. Two FBoV-2 identified strains shared high homologies with FBoV-2 reference strains based on the complete genome and entire encoding gene, but lower identities were exhibited in the NP1 and VP1 regions for the other 4 FBoV-1 identified strains compared with FBoV-1 reference strains. CONCLUSION: These findings demonstrate that genetically diverse FBoV-1 and FBoV-2 widely circulate in cats in Northeast China and that FBoV-1 is more prevalent. The high prevalence of FBoV in cats with diarrhea symptoms suggests that FBoV infection may be associated with diarrhea in cats.


Asunto(s)
Bocavirus/clasificación , Bocavirus/genética , Enfermedades de los Gatos/virología , Infecciones por Parvoviridae/veterinaria , Filogenia , Animales , Secuencia de Bases , Bocavirus/aislamiento & purificación , Enfermedades de los Gatos/epidemiología , Gatos , China , Análisis por Conglomerados , ADN Viral/genética , Diarrea/epidemiología , Diarrea/veterinaria , Diarrea/virología , Genes Virales/genética , Variación Genética , Genoma Viral , Genotipo , Infecciones por Parvoviridae/epidemiología , Infecciones por Parvoviridae/virología , Proteínas no Estructurales Virales/genética
13.
Arch Virol ; 163(11): 3099-3103, 2018 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30039316

RESUMEN

In this study, we detected and genetically characterized rat bocavirus (RBoV) carried in 496 murine rodents that were captured in four provinces in China between May 2015 and May 2017. RBoV-positive samples were found in all four provinces, with a total positive rate of 24.8% (123/496) in throat swabs and 58.1% (286/492) in fecal samples. Twelve nearly full-length genome sequences of RBoV were determined, and the average sequence identity was 96.2%. Phylogenetic analysis showed that RBoVs formed a distinct clade that was distinguishable from the bocaviruses discovered in humans and other animals.


Asunto(s)
Bocavirus/aislamiento & purificación , Heces/virología , Orofaringe/virología , Infecciones por Parvoviridae/veterinaria , Enfermedades de los Roedores/virología , Animales , Bocavirus/clasificación , Bocavirus/genética , Genoma Viral , Infecciones por Parvoviridae/virología , Filogenia , Ratas , Roedores
14.
Emerg Microbes Infect ; 7(1): 48, 2018 Mar 29.
Artículo en Inglés | MEDLINE | ID: mdl-29593218

RESUMEN

Members in the genus Bocaparvovirus are closely related to human health and have a wide host range. The diverse hosts raise the possibility of crossing species barrier, which is a feature of emerging viruses. Among the mammalian hosts, rodents are generally acknowledged to be important reservoirs of emerging viruses. Here, rodent samples collected from six provinces and autonomous regions of China (Liaoning, Inner Mongolia, Tibet, Xinjiang, Guangxi and Yunnan) were used to investigate the prevalence and distribution of bocaparvoviruses. By using next-generation sequencing first, a partial non-structural protein 1 (NS1) gene belonging to a possible novel bocaparvovirus was discovered. Following this, PCR-based screening of NS1 gene was conducted in 485 rodent samples, with 106 positive results found in seven rodent species (Rattus norvegicus, Mus musculus, Apodemus agrarius, Cricetulus barabensis, Rattus flavipectus, Rattus rattus and Rhombomys opimus). Finally, six nearly full-length genomes and three complete CDS were obtained and the newly identified bocaparvovirus was tentatively named rodent bocavirus (RoBoV). RoBoV has three ORFs: NS1, NP1, and VP, which are characteristics of bocaparvoviruses. Phylogenetic analyses revealed that porcine bocavirus isolate PBoV-KU14, a member of Ungulate bocaparvovirus 4, was the most related virus to RoBoV, with 92.1-92.9% amino acid identities in NS1 protein. Alignments of RoBoV-related sequences showed RoBoV isolates could be classified into two clades, demonstrating an inter-host genetic diversity. The results indicate a potential interspecies transmission of RoBoV between rodents and swine and expand our knowledge on bocaparvoviruses in rodent populations.


Asunto(s)
Bocavirus/genética , Bocavirus/aislamiento & purificación , Infecciones por Parvoviridae/virología , Roedores/virología , Animales , Bocavirus/clasificación , China/epidemiología , Reservorios de Enfermedades/virología , Variación Genética , Genoma Viral/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Ratones , Sistemas de Lectura Abierta , Infecciones por Parvoviridae/epidemiología , Infecciones por Parvoviridae/transmisión , Filogenia , Prevalencia , Ratas , Proteínas Virales/genética
15.
Vet Pathol ; 55(3): 434-441, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29421972

RESUMEN

Bocaviruses are small nonenveloped DNA viruses belonging to the Bocaparvovirus genus of the Parvoviridae family and have been linked to both respiratory and enteric disease in humans and animals. To date, 3 bocaviruses, canine bocaviruses 1 to 3 (CBoV-1-3), have been shown to affect dogs with different disease manifestations reported for infected animals. We used next-generation sequencing to identify a novel strain of canine CBoV-2 (CBoV TH-2016) in a litter of puppies that died in Thailand from acute dyspnea and hemoptysis, for which no causal pathogen could be identified in routine assays. Analysis of the complete coding sequences of CBoV TH-2016 showed that this virus was most closely related to a strain previously identified in South Korea (isolate 14D193), with evidence of genetic recombination in the VP2 gene with related strains from South Korea and Hong Kong. Use of quantitative polymerase chain reaction showed the presence of CBoV TH-2016 in several tissues, suggesting hematogenous virus spread, while only intestinal tissue was found to be positive by in situ hybridization and electron microscopy. Histologic small intestinal lesions associated with CBoV TH-2016 infection were eosinophilic intranuclear inclusion bodies within villous enterocytes without villous atrophy or fusion, similar to those previously considered pathognomonic for CBoV-1 infection. Therefore, this study provides novel insights in the pathogenicity of canine bocavirus infections and suggests that a novel recombinant CBoV-2 may result in atypical findings of CBoV infection. Although the specific cause of death of these puppies remained undetermined, a contributory role of enteric CBoV TH-2016 infection is possible.


Asunto(s)
Bocavirus/clasificación , Enfermedades de los Perros/patología , Infecciones por Parvoviridae/veterinaria , Animales , Enfermedades de los Perros/virología , Perros , Infecciones por Parvoviridae/patología , Infecciones por Parvoviridae/virología , Reacción en Cadena de la Polimerasa
16.
Arch Virol ; 163(3): 707-712, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29170830

RESUMEN

In this study, we obtained the whole genomes of three porcine bocaparvovirus (PBoV) strains (GD6, GD10, and GD23) by polymerase chain reaction. Sequence analysis showed that all three field strains belonged to PBoV group 3 (G3). The phylogenetic trees based on NS1, NP1, and VP1 differed to the extent that these PBoVs were potentially more closely related to bocaparvoviruses known to infect other animals than to other PBoVs. GD6, GD10, and GD23 all included the conserved sequences YLGPF and HDXXY, with known phospholipase A2 activity. Using recombination-detection software we identified a natural recombinant breakpoint in the NS1 region of PBoV G3. The results of this study will further the epidemiological characterization of PBoVs.


Asunto(s)
Bocavirus/genética , Genoma Viral , Infecciones por Parvoviridae/veterinaria , Fosfolipasas A2/genética , Filogenia , Enfermedades de los Porcinos/epidemiología , Proteínas Virales/genética , Secuencia de Aminoácidos , Animales , Bocavirus/clasificación , Bocavirus/aislamiento & purificación , China/epidemiología , Cartilla de ADN/química , Cartilla de ADN/metabolismo , ADN Viral/genética , Infecciones por Parvoviridae/epidemiología , Infecciones por Parvoviridae/virología , Reacción en Cadena de la Polimerasa , Recombinación Genética , Análisis de Secuencia de ADN , Porcinos/virología , Enfermedades de los Porcinos/virología
17.
Sci China Life Sci ; 60(12): 1348-1356, 2017 12.
Artículo en Inglés | MEDLINE | ID: mdl-29218438

RESUMEN

Bocaparvovirus (BOV) is a genetically diverse group of DNA viruses and a possible cause of respiratory, enteric, and neurological diseases in humans and animals. Here, two highly divergent BOVs (tentatively named as Himalayan marmot BOV, HMBOV1 and HMBOV2) were identified in the livers and feces of wild Himalayan marmots in China, by viral metagenomic analysis. Five of 300 liver samples from Himalayan marmots were positive for HMBOV1 and five of 99 fecal samples from these animals for HMBOV2. Their nearly complete genome sequences are 4,672 and 4,887 nucleotides long, respectively, with a standard genomic organization and containing protein-coding motifs typical for BOVs. Based on their NS1, NP1, and VP1, HMBOV1 and HMBOV2 are most closely related to porcine BOV SX/1-2 (approximately 77.0%/50.0%, 50.0%/53.0%, and 79.0%/54.0% amino acid identity, respectively). Phylogenetic analysis of these three proteins showed that HMBOV1 and HMBOV2 formed two distinctly independent branches in BOVs. According to these results, HMBOV1 and HMBOV2 are two different novel species in the Bocaparvovirus genus. Their identification expands our knowledge of the genetic diversity and evolution of BOVs. Further studies are needed to investigate their potential pathogenicity and their impact on Himalayan marmots and humans.


Asunto(s)
Bocavirus/fisiología , Marmota/virología , Infecciones por Parvoviridae/virología , Enfermedades de los Roedores/virología , Animales , Secuencia de Bases , Bocavirus/clasificación , Bocavirus/genética , China , Heces/virología , Genoma Viral/genética , Geografía , Hígado/virología , Metagenómica , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido
18.
J Gen Virol ; 98(6): 1349-1359, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28613145

RESUMEN

The recent emergence of Middle East respiratory syndrome (MERS) coronavirus and its discovery from dromedary camels has boosted interest in the search for novel viruses in dromedaries. While bocaparvoviruses are known to infect various animals, it was not known that they exist in dromedaries. In this study, we describe the discovery of two novel dromedary camel bocaparvoviruses (DBoVs), DBoV1 and DBoV2, from dromedary faecal samples in Dubai. Among 667 adult dromedaries and 72 dromedary calves, 13.9 % of adult dromedaries and 33.3 % of dromedary calves were positive for DBoV1, while 7.0 % of adult dromedaries and 25.0 % of dromedary calves were positive for DBoV2, as determined by PCR. Sequencing of 21 DBoV1 and 18 DBoV2 genomes and phylogenetic analysis showed that DBoV1 and DBoV2 formed two distinct clusters, with only 32.6-36.3 % amino acid identities between the DBoV1 and DBoV2 strains. Quasispecies were detected in both DBoVs. The amino acid sequences of the NS1 proteins of all the DBoV1 and DBoV2 strains showed <85 % identity to those of all the other bocaparvoviruses, indicating that DBoV1 and DBoV2 are two bocaparvovirus species according to the ICTV criteria. Although the typical genome structure of NS1-NP1-VP1/VP2 was observed in DBoV1 and DBoV2, no phospholipase A2 motif and associated calcium binding site were observed in the predicted VP1 sequences for any of the 18 sequenced DBoV2, and no start codons were found for their VP1. For all 18 DBoV2 genomes, an AT-rich region of variable length and composition was present downstream to NP1. Further studies will be crucial to understand the pathogenic potential of DBoVs in this unique group of animals.


Asunto(s)
Bocavirus/clasificación , Bocavirus/aislamiento & purificación , Camelus/virología , Heces/virología , Infecciones por Parvoviridae/veterinaria , Animales , Bocavirus/genética , Análisis por Conglomerados , Orden Génico , Genoma Viral , Infecciones por Parvoviridae/virología , Filogenia , Reacción en Cadena de la Polimerasa , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Emiratos Árabes Unidos
19.
Biologicals ; 46: 64-67, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28100412

RESUMEN

Using viral metagenomics we analyzed four bovine serum pools assembled from 715 calves in the United States. Two parvoviruses, bovine parvovirus 2 (BPV2) and a previously uncharacterized parvovirus designated as bosavirus (BosaV), were detected in 3 and 4 pools respectively and their complete coding sequences generated. Based on NS1 protein identity, bosavirus qualifies as a member of a new species in the copiparvovirus genus. Also detected were low number of reads matching ungulate tetraparvovirus 2, bovine hepacivirus, and several papillomaviruses. This study further characterizes the diversity of viruses in calf serum with the potential to infect fetuses and through fetal bovine serum contaminate cell cultures.


Asunto(s)
Bovinos/sangre , Bovinos/virología , Genoma Viral/genética , Metagenómica/métodos , Animales , Bocavirus/clasificación , Bocavirus/genética , Proteínas de la Cápside/clasificación , Proteínas de la Cápside/genética , Geografía , Infecciones por Parvoviridae/veterinaria , Infecciones por Parvoviridae/virología , Filogenia , Análisis de Secuencia de ADN , Suero/virología , Especificidad de la Especie , Estados Unidos , Proteínas no Estructurales Virales/clasificación , Proteínas no Estructurales Virales/genética
20.
J Gen Virol ; 97(12): 3345-3358, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27902362

RESUMEN

We report the discovery of a novel bocaparvovirus, bat bocaparvovirus (BtBoV), in one spleen, four respiratory and 61 alimentary samples from bats of six different species belonging to three families, Hipposideridae, Rhinolophidae and Vespertilionidae. BtBoV showed a higher detection rate in alimentary samples of Rhinolophus sinicus (5.7 %) than those of other bat species (0.43-1.59 %), supporting R. sinicus as the primary reservoir and virus spillover to accidental bat species. BtBoV peaked during the lactating season of R. sinicus, and it was more frequently detected among female than male adult bats (P<0.05), and among lactating than non-lactating female bats (P<0.0001). Positive BtBoV detection was associated with lower body weight in lactating bats (P<0.05). Ten nearly complete BtBoV genomes from three bat species revealed a unique large ORF1 spanning NS1 and NP1 in eight genomes and conserved splicing signals leading to multiple proteins, as well as a unique substitution in the conserved replication initiator motif within NS1. BtBoV was phylogenetically distantly related to known bocaparvoviruses with ≤57.3 % genome identities, supporting BtBoV as a novel species. Ms-BtBoV from Miniopterus schreibersii and Hp-BtBoV from Hipposideros pomona demonstrated 97.2-99.9 % genome identities with Rs-BtBoVs from R. sinicus, supporting infection of different bat species by a single BtBoV species. Rs-BtBoV_str15 represents the first bat parvovirus genome with non-coding regions sequenced, which suggested the presence of head-to-tail genomic concatamers or episomal forms of the genome. This study represents the first to describe interspecies transmission in BoVs. The high detection rates in lactating female and juvenile bats suggest possible vertical transmission of BtBoV.


Asunto(s)
Bocavirus/aislamiento & purificación , Quirópteros/virología , Infecciones por Parvoviridae/veterinaria , Animales , Secuencia de Bases , Bocavirus/clasificación , Bocavirus/genética , China , Quirópteros/clasificación , Femenino , Genoma Viral , Masculino , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Infecciones por Parvoviridae/transmisión , Infecciones por Parvoviridae/virología , Filogenia , Estaciones del Año , Proteínas Virales/genética , Proteínas Virales/metabolismo
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