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1.
Genes (Basel) ; 15(4)2024 Mar 26.
Artículo en Inglés | MEDLINE | ID: mdl-38674340

RESUMEN

Gene duplication is a key biological process in the evolutionary history of plants and an important driving force for the diversification of genomic and genetic systems. Interactions between the calcium sensor calcineurin B-like protein (CBL) and its target, CBL-interacting protein kinase (CIPK), play important roles in the plant's response to various environmental stresses. As a food crop with important economic and research value, turnip (Brassica rapa var. rapa) has been well adapted to the environment of the Tibetan Plateau and become a traditional crop in the region. The BrrCIPK9 gene in turnip has not been characterized. In this study, two duplicated genes, BrrCIPK9.1 and BrrCIPK9.2, were screened from the turnip genome. Based on the phylogenetic analysis, BrrCIPK9.1 and BrrCIPK9.2 were found located in different sub-branches on the phylogenetic tree. Real-time fluorescence quantitative PCR analyses revealed their differential expression levels between the leaves and roots and in response to various stress treatments. The differences in their interactions with BrrCBLs were also revealed by yeast two-hybrid analyses. The results indicate that BrrCIPK9.1 and BrrCIPK9.2 have undergone Asparagine-alanine-phenylalanine (NAF) site divergence during turnip evolution, which has resulted in functional differences between them. Furthermore, BrrCIPK9.1 responded to high-pH (pH 8.5) stress, while BrrCIPK9.2 retained its ancestral function (low K+), thus providing further evidence of their functional divergence. These functional divergence genes facilitate turnip's good adaptation to the extreme environment of the Tibetan Plateau. In summary, the results of this study reveal the characteristics of the duplicated BrrCIPK9 genes and provide a basis for further functional studies of BrrCBLs-BrrCIPKs in turnip.


Asunto(s)
Brassica rapa , Duplicación de Gen , Regulación de la Expresión Génica de las Plantas , Filogenia , Proteínas de Plantas , Brassica rapa/genética , Brassica rapa/crecimiento & desarrollo , Brassica rapa/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Genes Duplicados/genética , Estrés Fisiológico/genética
2.
BMC Plant Biol ; 21(1): 567, 2021 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-34861825

RESUMEN

BACKGROUND: Tipburn, also known as leaf tip necrosis, is a severe issue in Chinese cabbage production. One known cause is that plants are unable to provide adequate Ca2+ to rapidly expanding leaves. Bacterial infection is also a contributing factor. Different cultivars have varying degrees of tolerance to tipburn. Two inbred lines of Chinese cabbage were employed as resources in this research. RESULTS: We determined that the inbred line 'J39290' was the tipburn resistant material and the inbred line 'J95822' was the tipburn sensitive material based on the severity of tipburn, and the integrity of cell membrane structure. Ca2+ concentration measurements revealed no significant difference in Ca2+ concentration between the two materials inner leaves. Transcriptome sequencing technology was also used to find the differentially expressed genes (DEGs) of 'J95822' and 'J39290', and there was no significant difference in the previously reported Ca2+ uptake and transport related genes in the two materials. However, it is evident through DEG screening and classification that 23 genes are highly linked to plant-pathogen interactions, and they encode three different types of proteins: CaM/CML, Rboh, and CDPK. These 23 genes mainly function through Ca2+-CaM/CML-CDPK signal pathway based on KEGG pathway analysis, protein interaction prediction, and quantitative real-time PCR (qRT-PCR) of key genes. CONCLUSIONS: By analyzing the Ca2+ concentration in the above two materials, the transcription of previously reported genes related to Ca2+ uptake and transport, the functional annotation and KEGG pathway of DEGs, it was found that Ca2+ deficiency was not the main cause of tipburn in 'J95822', but was probably caused by bacterial infection. This study lays a theoretical foundation for exploring the molecular mechanism of resistance to tipburn in Chinese cabbage, and has important guiding significance for genetics and breeding.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Brassica rapa/genética , Calcio/metabolismo , Enfermedades de las Plantas/genética , Proteínas de Plantas/metabolismo , Regulación de la Expresión Génica de las Plantas/fisiología , Predisposición Genética a la Enfermedad , Magnesio/química , Hojas de la Planta/química , Hojas de la Planta/metabolismo , Proteínas de Plantas/genética , Raíces de Plantas/química , Raíces de Plantas/metabolismo , Potasio/química , Sodio/química
3.
Genes (Basel) ; 12(9)2021 09 10.
Artículo en Inglés | MEDLINE | ID: mdl-34573381

RESUMEN

The 2-oxoglutarate and Fe(II)-dependent dioxygenase (2OGD) superfamily is the second largest enzyme family in the plant genome, and its members are involved in various oxygenation and hydroxylation reactions. Due to their important biochemical significance in metabolism, a systematic analysis of the plant 2OGD genes family is necessary. Here, we identified 160, 179, and 337 putative 2OGDs from Brassica rapa, Brassica oleracea, and Brassica napus. According to their gene structure, domain, phylogenetic features, function, and previous studies, we also divided 676 2OGDs into three subfamilies: DOXA, DOXB, and DOXC. Additionally, homologous and phylogenetic comparisons of three subfamily genes provided valuable insight into the evolutionary characteristics of the 2OGD genes from Brassica plants. Expression profiles derived from the transcriptome and Genevestigator database exhibited distinct expression patterns of the At2OGD, Br2OGD, and Bo2OGD genes in different developmental stages, tissues, or anatomical parts. Some 2OGD genes showed high expression levels in various tissues, such as callus, seed, silique, and root tissues, while other 2OGD genes were expressed at very low levels in other tissues. Analysis of six Bo2OGD genes in different tissues by qRT-PCR indicated that these genes are involved in the metabolism of gibberellin, which in turn regulates plant growth and development. Our working system analysed 2OGD gene families of three Brassica plants and laid the foundation for further study of their functional characterization.


Asunto(s)
Brassica/genética , Dioxigenasas/genética , Proteínas de Arabidopsis/genética , Brassica/clasificación , Brassica/crecimiento & desarrollo , Brassica/metabolismo , Brassica napus/genética , Brassica napus/crecimiento & desarrollo , Brassica napus/metabolismo , Brassica rapa/genética , Brassica rapa/crecimiento & desarrollo , Brassica rapa/metabolismo , Evolución Molecular , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Giberelinas/metabolismo , Redes y Vías Metabólicas/genética , Familia de Multigenes , Filogenia , Desarrollo de la Planta/genética , Proteínas de Plantas/genética , Transcriptoma
4.
BMC Plant Biol ; 21(1): 373, 2021 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-34388969

RESUMEN

BACKGROUND: Flowering is an important inflection point in the transformation from vegetative to reproductive growth, and premature bolting severely decreases crop yield and quality. RESULTS: In this study, a stable early-bolting mutant, ebm3, was identified in an ethyl methanesulfonate (EMS)-mutagenized population of a Chinese cabbage doubled haploid (DH) line 'FT'. Compared with 'FT', ebm3 showed early bolting under natural cultivation in autumn, and curled leaves. Genetic analysis showed that the early-bolting phenotype was controlled by a single recessive nuclear gene. Modified MutMap sequencing, genotyping analyses and allelism test provide strong evidence that BrEBM3 (BraA04g017190.3 C), encoding the histone methyltransferase CURLY LEAF (CLF), was the strongly candidate gene of the emb3. A C to T base substitution in the 14th exon of BrEBM3 resulted in an amino acid change (S to F) and the early-bolting phenotype of emb3. The mutation occurred in the SET domain (Suppressor of protein-effect variegation 3-9, Enhancer-of-zeste, Trithorax), which catalyzes site- and state-specific lysine methylation in histones. Tissue-specific expression analysis showed that BrEBM3 was highly expressed in the flower and bud. Promoter activity assay confirmed that BrEBM3 promoter was active in inflorescences. Subcellular localization analysis revealed that BrEBM3 localized in the nucleus. Transcriptomic studies supported that BrEBM3 mutation might repress H3K27me3 deposition and activate expression of the AGAMOUS (AG) and AGAMOUS-like (AGL) loci, resulting in early flowering. CONCLUSIONS: Our study revealed that an EMS-induced early-bolting mutant ebm3 in Chinese cabbage was caused by a nonsynonymous mutation in BraA04g017190.3 C, encoding the histone methyltransferase CLF. These results improve our knowledge of the genetic and genomic resources of bolting and flowering, and may be beneficial to the genetic improvement of Chinese cabbage.


Asunto(s)
Sustitución de Aminoácidos , Brassica rapa/enzimología , Histona Metiltransferasas/metabolismo , Proteínas de Plantas/metabolismo , Aminoácidos/metabolismo , Brassica rapa/genética , Brassica rapa/crecimiento & desarrollo , Flores/enzimología , Flores/genética , Flores/crecimiento & desarrollo , Histona Metiltransferasas/química , Histona Metiltransferasas/genética , Mutación , Proteínas de Plantas/genética , Transcriptoma
5.
Int J Mol Sci ; 22(11)2021 Jun 02.
Artículo en Inglés | MEDLINE | ID: mdl-34199515

RESUMEN

Leaf senescence is a developmental process induced by various molecular and environmental stimuli that may affect crop yield. The dark-induced leaf senescence-91 (DLS-91) plants displayed rapid leaf senescence, dramatically decreased chlorophyll contents, low photochemical efficiencies, and upregulation of the senescence-associated marker gene BrSAG12-1. To understand DLS molecular mechanism, we examined transcriptomic changes in DLS-91 and control line DLS-42 following 0, 1, and 4 days of dark treatment (DDT) stages. We identified 501, 446, and 456 DEGs, of which 16.7%, 17.2%, and 14.4% encoded TFs, in samples from the three stages. qRT-PCR validation of 16 genes, namely, 7 MADS, 6 NAC, and 3 WRKY, suggested that BrAGL8-1, BrAGL15-1, and BrWRKY70-1 contribute to the rapid leaf senescence of DLS-91 before (0 DDT) and after (1 and 4 DDT) dark treatment, whereas BrNAC046-2, BrNAC029-2/BrNAP, and BrNAC092-1/ORE1 TFs may regulate this process at a later stage (4 DDT). In-silico analysis of cis-acting regulatory elements of BrAGL8-1, BrAGL42-1, BrNAC029-2, BrNAC092-1, and BrWRKY70-3 of B. rapa provides insight into the regulation of these genes. Our study has uncovered several AGL-MADS, WRKY, and NAC TFs potentially worthy of further study to understand the underlying mechanism of rapid DLS in DLS-91.


Asunto(s)
Envejecimiento/genética , Brassica rapa/genética , Factores de Transcripción/genética , Transcriptoma/genética , Brassica rapa/crecimiento & desarrollo , Clorofila/genética , Regulación de la Expresión Génica de las Plantas/genética , Proteínas de Dominio MADS/genética , Hojas de la Planta/genética , Proteínas de Plantas/genética
6.
Methods Mol Biol ; 2288: 145-162, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34270010

RESUMEN

Culture of isolated microspores is a widely used method to obtain haploid and doubled haploid plants for many crop species. This protocol describes the steps necessary to obtain a large number of microspore derived embryos for pakchoi (Brassica rapa L. ssp. chinensis) and zicaitai (Brassica rapa L. ssp. сhinensis Hanelt var. purpuraria Kitam).


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Brassica rapa/genética , Fitomejoramiento/métodos , Brassica rapa/ultraestructura , Cloroplastos/ultraestructura , Cromosomas de las Plantas/ultraestructura , Productos Agrícolas/genética , Productos Agrícolas/crecimiento & desarrollo , Medios de Cultivo/química , Diploidia , Germinación/genética , Haploidia , Homocigoto , Microscopía Fluorescente , Biología Molecular/métodos , Ploidias , Polen/genética , Polen/crecimiento & desarrollo , Técnicas de Cultivo de Tejidos
7.
Methods Mol Biol ; 2288: 181-199, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34270012

RESUMEN

The production of haploid and doubled haploid plants is a biotechnological tool that shortens the breeding process of new cultivars in many species. Doubled haploid plants are homozygous at every locus and they can be utilized as parents to produce F1 hybrids. In this chapter, we describe a protocol for the production of doubled haploid plants in Brassica rapa L. subsp. pekinensis using androgenesis induced by isolated microspore cultures.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Brassica rapa/genética , Fitomejoramiento/métodos , Aclimatación/genética , Brassica rapa/fisiología , Productos Agrícolas/genética , Productos Agrícolas/crecimiento & desarrollo , Productos Agrícolas/fisiología , Medios de Cultivo/química , ADN de Plantas/genética , Diploidia , Glucosa-6-Fosfato Isomerasa/genética , Haploidia , Homocigoto , Biología Molecular/métodos , Polen/genética , Polen/crecimiento & desarrollo , Reacción en Cadena de la Polimerasa , Regeneración/genética , Técnicas de Cultivo de Tejidos
8.
PLoS One ; 16(6): e0252899, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34086824

RESUMEN

Brassica rapa is an important leafy vegetable that can potentially accumulate high concentrations of cadmium (Cd), posing a risk to human health. The aim of the present study was to identify cadmium detoxifying molecular mechanisms in B. rapa using a functional cloning strategy. A cDNA library constructed from roots of B. rapa plants treated with Cd was transformed into the Cd sensitive yeast mutant strain DTY167 that lacks the yeast cadmium factor (YCF1), and resistant yeast clones were selected on Cd containing media. Two hundred genes potentially conferring cadmium resistance were rescued from the surviving yeast clones and sequenced. Sequencing analysis revealed that genes encoding for metallothionein (MT)1, MT2a, MT2b and MT3, and phytochelatin synthase (PCS)1 and PCS2 accounted for 35.5%, 28.5%, 4%, 11.3%, 18.7% and 2%, respectively of the genes identified. MTs and PCSs expressing DTY167 cells showed resistance to Cd as well as to Zn. PCS1 expressing yeast cells were also more resistant to Pb compared to those expressing MTs or PCS2. RT-PCR results showed that Cd treatment strongly induced the expression levels of MTs in the root and shoot. Furthermore, the different MTs and PCSs exhibited tissue specific expression. The results indicate that MTs and PCS genes potentially play a central role in detoxifying Cd and other toxic metals in B. rapa.


Asunto(s)
Aminoaciltransferasas/metabolismo , Brassica rapa/metabolismo , Cadmio/toxicidad , Tolerancia a Medicamentos/genética , Metalotioneína/metabolismo , Proteínas de Plantas/metabolismo , Raíces de Plantas/metabolismo , Aminoaciltransferasas/genética , Brassica rapa/efectos de los fármacos , Brassica rapa/genética , Brassica rapa/crecimiento & desarrollo , Regulación de la Expresión Génica de las Plantas , Metalotioneína/genética , Fitoquelatinas/metabolismo , Proteínas de Plantas/genética , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo
9.
Plant Sci ; 309: 110934, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-34134841

RESUMEN

With the discovery of essential genes regulating tillering, such as MONOCULM 1 (MOC1) in rice and LATERAL SUPPRESSOR (LAS in Arabidopsis, LS in tomato), research on tillering mechanisms has made great progress; however, the study of tillering in non-heading Chinese cabbage (NHCC) is rare. Here, we report that BcLAS, as a member of the GRAS family, plays an important role in the tillering of NHCC during its vegetative growth. BcLAS was almost not expressed in other examed parts except leaf axils throughout life. When the expression of BcLAS was silenced utilizing virus-induced gene silencing (VIGS) technology, we found that the tiller number of 'Maertou' decreased sharply. In 'Suzhouqing', overexpression of BcLAS significantly promoted tillering. BcCCS52, the orthologue to CELL CYCLE SEITCH 52 (CCS52), interacts with BcLAS. Downregulation of the expression of BcCCS52 promoted tillering of 'Suzhouqing'; therefore, we conclude that BcCCS52 plays a negative role in tillering regulation. Our findings reveal the tillering regulation mechanism of NHCCs at the vegetative stage and report an orthologue of CCS52 regulating tillering in NHCC.


Asunto(s)
Brassica rapa/genética , Proteínas de Ciclo Celular/metabolismo , Regulación de la Expresión Génica de las Plantas , Proteínas de Plantas/metabolismo , Secuencias de Aminoácidos , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Brassica rapa/crecimiento & desarrollo , Brassica rapa/fisiología , Ciclo Celular , Proteínas de Ciclo Celular/genética , Expresión Génica , Silenciador del Gen , Filogenia , Hojas de la Planta/genética , Hojas de la Planta/crecimiento & desarrollo , Hojas de la Planta/fisiología , Proteínas de Plantas/genética , Dominios Proteicos
11.
Plant Signal Behav ; 16(6): 1913309, 2021 06 03.
Artículo en Inglés | MEDLINE | ID: mdl-33955825

RESUMEN

Nitrogen (N) deficiency is a main environmental factor that induces early senescence. Cotyledons provide an important N source during germination and early seedling development. In this study, we observed that N deficient condition enhanced gene expression involved in purine catabolism in cotyledons of Chinese cabbage (Brassica rapa ssp. Pekinensis). Seedlings grown with added allopurinol, an inhibitor of xanthine dehydrogenase, in the growth medium showed reduced chlorophyll degradation in cotyledons and lower fresh weight, compared with seedlings grown on normal medium. On the basis of these results, we speculated that xanthine-derived metabolites might affect both seedling growth and early senescence in cotyledons. To confirm this, seedlings were grown with exogenous xanthine to analyze the role of xanthine-derived metabolites under N deficient condition. Seedlings with xanthine as the sole N-source grew faster, and more cotyledon chlorophyll was broken down, compared with seedlings grown without xanthine. The expression levels of senescence- and purine metabolism-related genes in cotyledons were higher than those in seedlings grown without xanthine. These results indicate the possibility that xanthine plays a role as an activator in both purine catabolism and chlorophyll degradation in cotyledons under N deficient condition.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Brassica rapa/genética , Brassica rapa/metabolismo , Clorofila/metabolismo , Cotiledón/metabolismo , Nitrógeno/deficiencia , Plantones/metabolismo , Xantina/metabolismo , Clorofila/genética , Cotiledón/genética , Productos Agrícolas/genética , Productos Agrícolas/crecimiento & desarrollo , Productos Agrícolas/metabolismo , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Plantones/genética , Plantones/crecimiento & desarrollo
12.
Plant Sci ; 307: 110900, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33902859

RESUMEN

The hybrid production of winter rapeseed is limited by the difficult vernalization processes. Thus, floral regulation of winter rapeseed parental lines cannot be executed through selection of sowing time during hybrid production. Therefore, in this study, strong winter rapeseed was used as the material to analyse the floral transition mechanism of germinating seed vernalization. Results demonstrated that germinating seeds could sense low temperatures and complete vernalization following a low temperature treatment for 56.5 d with a 100 % vernalization rate. The regression equation between vernalization rate (y) and vernalization treatment days (x) was determined as y = 0.019x - 0.0765 (R² = 0.8529). When the vernalization treatment time was prolonged, the vernalization rate and fruiting ability increased rapidly, and variations were observed in the membrane lipid oxidation and physiological characteristics. Furthermore, at the prolonged treatment time of 10-50 d, the salicylic acid (SA) content continued to decrease, with values significantly lower than those of the control. SA content is significantly positively correlated with the level of BrFLC transcription and a significantly negatively correlated with the vernalization rate of germinating seeds. Moreover, the expressions of genes associated with SA biosynthesis, SA signal transduction, the flowering key negative regulators were suppressed and that of positive regulators were promoted during vernalization. These results suggest that SA as a floral repressor is involved in the regulation of the vernalization process of winter rapeseed germination seeds. In addition, SA may be related to the counting dosage of vernalization.


Asunto(s)
Adaptación Fisiológica , Brassica rapa/crecimiento & desarrollo , Frío , Flores/crecimiento & desarrollo , Germinación/fisiología
13.
PLoS One ; 16(2): e0246857, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33630837

RESUMEN

Decision making is constantly present in agriculture. Choosing the wrong variety carries the risk that the investment in terms of sowing does not pay off at all. Therefore, it is necessary to choose the variety that gives the best results. In order to achieve this, it is necessary to apply multi-criteria decision-making of available varieties, which is, in this paper, done on the example of hybrid varieties of rapeseed that were created by selection at the Institute of Field and Vegetable Crops in Novi Sad. By applying fuzzy logic, a novel integrated Multi-Criteria Decision-Making (MCDM) model is developed and rapeseed varieties were evaluated. For determining four main and 20 subcriteria, fuzzy PIPRECIA (PIvot Pairwise RElative Criteria Importance Assessment) method has been applied based on fuzzy Bonferroni operator, while for ranking alternatives fuzzy MABAC (Multi-Attributive Border Approximation area Comparison) method has been used. The results obtained using the novel integrated fuzzy MCDM model showed that the variety A2 - Zorica has the best results, followed by A1 - NS Ras, while the worst results were seen by the variety A5 - Zlatna. These results were confirmed using other five fuzzy MCDM methods. Sensitivity analysis-changing criteria weights showed the worst results in the variety A6 - Jovana, which took last place in the application of 18 scenarios. The presented model and the results of this research will help farmers to solve this decision problem.


Asunto(s)
Brassica napus/crecimiento & desarrollo , Brassica rapa/crecimiento & desarrollo , Productos Agrícolas/crecimiento & desarrollo , Modelos Biológicos , Lógica Difusa
14.
Plant Cell Environ ; 44(1): 339-345, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-32996612

RESUMEN

Volatiles play major roles in mediating ecological interactions between soil (micro)organisms and plants. It is well-established that microbial volatiles can increase root biomass and lateral root formation. To date, however, it is unknown whether microbial volatiles can affect directional root growth. Here, we present a novel method to study belowground volatile-mediated interactions. As proof-of-concept, we designed a root Y-tube olfactometer, and tested the effects of volatiles from four different soil-borne fungi on directional growth of Brassica rapa roots in soil. Subsequently, we compared the fungal volatile organic compounds (VOCs) previously profiled with Gas Chromatography-Mass Spectrometry (GC-MS). Using our newly designed setup, we show that directional root growth in soil is differentially affected by fungal volatiles. Roots grew more frequently toward volatiles from the root pathogen Rhizoctonia solani, whereas volatiles from the other three saprophytic fungi did not impact directional root growth. GC-MS profiling showed that six VOCs were exclusively emitted by R. solani. These findings verify that this novel method is suitable to unravel the intriguing chemical cross-talk between roots and soil-borne fungi and its impact on root growth.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Raíces de Plantas/crecimiento & desarrollo , Microbiología del Suelo , Compuestos Orgánicos Volátiles/metabolismo , Brassica rapa/metabolismo , Cromatografía de Gases y Espectrometría de Masas , Raíces de Plantas/metabolismo
15.
Theor Appl Genet ; 134(2): 473-487, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33084931

RESUMEN

KEY MESSAGE: Genome wide association studies enabled prediction of many candidate genes for flowering, maturity and plant height under differing day-length conditions. Some genes were envisaged only from derived B. rapa. Flowering and plant height are the key life history traits. These are crucial for adaptation and productivity. Current investigations aimed to examine genotypic differences governing days to flowering, maturity and plant height under contrasting day-length conditions; and identify genomic regions governing the observed phenotypic variations. An association panel comprising 195 inbred lines, representing natural (NR) and derived (DR) forms of Brassica rapa (AA; 2n = 20), was evaluated at two sowing dates and two locations, representing different day-length regimes. Derived B. rapa is a unique pre-breeding material extracted from B. juncea (AABB; 2n = 36). Population structure analysis, using DArT genotypes established derived B. rapa as a genetic resource distinct from natural B. rapa. Genome wide association studies facilitated detection of many trait associated SNPs. Chromosomes A03, A05 and A09 harboured majority of these. Functional annotation of the associated SNPs and surrounding genome space(s) helped to predict 43 candidate genes. Many of these were predicted under specific day-length conditions. Important among these were the genes encoding floral meristem identity (SPL3, SPL15, AP3, BAM2), photoperiodic responses (COL2, AGL18, SPT, NF-YC4), gibberellic acid biosynthesis (GA1) and regulation of flowering (EBS). Some of the predicted genes were detected for DR subpanel alone. Genes controlling hormones, auxins and gibberellins appeared important for the regulation of plant height. Many of the significant SNPs were located on chromosomes harbouring previously reported QTLs and candidate genes. The identified loci may be used for marker-assisted selection after due validation.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Flores/crecimiento & desarrollo , Fitomejoramiento , Plantas Modificadas Genéticamente/crecimiento & desarrollo , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo , Brassica rapa/anatomía & histología , Brassica rapa/genética , Mapeo Cromosómico , Flores/anatomía & histología , Flores/genética , Genómica , Fenotipo , Plantas Modificadas Genéticamente/anatomía & histología , Plantas Modificadas Genéticamente/genética
16.
Food Chem ; 340: 128167, 2021 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-33007694

RESUMEN

Glucosinolates (GLs), found in Brassicaceae family, are precursor metabolites with anti-cancer properties. Increased GLs have been studied under various environmental growth conditions. Pak choi (Brassica rapa subsp. chinensis) is a GL-rich vegetable. We hypothesize that long exposure to light and drought will increase the biomass of, and GL production in, pak choi. The experiment was conducted for 6 weeks. Long light exposure (20 h/day) increased, whilst drought exposure (12 h/week) decreased the plant growth. The plants exposed to a combination of drought and long light conditions showed similar growth pattern as control plants. GL production increased at week 6 in plants exposed to long light, while drought exposure had no impact on GL production, with the exception of glucoraphanin. Significant positive correlations were observed between plant growth and GL yield with accumulated light exposure time. Our findings suggest that long exposure to light can be used to increase both the biomass and GL production in pak choi.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Brassica rapa/metabolismo , Sequías , Glucosinolatos/biosíntesis , Luz , Estrés Fisiológico , Brassica rapa/fisiología , Brassica rapa/efectos de la radiación
17.
J Sci Food Agric ; 101(8): 3202-3207, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33215704

RESUMEN

BACKGROUND: Insufficient intake of zinc is associated with various diseases worldwide. To overcome this problem, we aimed to establish a method for cultivating leafy vegetables with high zinc content in hydroponics without inhibiting their growth. Furthermore, we evaluated the effectiveness of the cultivated leafy vegetables with high zinc content in zinc-deficient mice. RESULTS: By adjusting the zinc concentration in the hydroponic solution to 5 mg L-1 starting from 7 days before harvesting, the zinc content in leaf lettuce increased eight times of that in the control, without any inhibition of the growth. Furthermore, when oxidized glutathione (GSSG) was added simultaneously with zinc to the hydroponic solution, the zinc content further doubled (16 times of that in the control). Similar results were obtained with komatsuna and red leaf lettuce, although there was a difference in the effect of GSSG treatment. The effectiveness of leafy vegetables with high zinc content in ameliorating zinc deficiency was evaluated by feeding lettuce with high zinc content to zinc-deficient mice. High zinc content lettuce significantly increased the zinc content in the liver, kidneys, gastrocnemius, and tibia of these mice. CONCLUSION: We established a cultivation method for lettuce and komatsuna with high zinc content without inhibiting growth by adjusting the zinc concentration in the hydroponic solution at an appropriate concentration for an appropriate period. The result of feeding test indicates that the intake of leafy vegetables with high zinc content can ameliorate zinc deficiency and might be useful in protection from several diseases associated with this deficiency. © 2020 Society of Chemical Industry.


Asunto(s)
Brassica rapa/crecimiento & desarrollo , Hidroponía/métodos , Lactuca/crecimiento & desarrollo , Zinc/deficiencia , Animales , Brassica rapa/química , Brassica rapa/metabolismo , Glutatión/metabolismo , Humanos , Lactuca/química , Lactuca/metabolismo , Masculino , Ratones , Verduras , Zinc/análisis , Zinc/metabolismo
18.
BMC Plant Biol ; 20(1): 538, 2020 Nov 30.
Artículo en Inglés | MEDLINE | ID: mdl-33256588

RESUMEN

BACKGROUND: Pistil development is a complicated process in plants, and female sterile mutants are ideal material for screening and cloning pistil development-related genes. Using the female sterile mutant (fsm1), BraA04g009730.3C was previously predicted as a candidate mutant gene encoding the STERILE APETALA (SAP) transcriptional regulator. In the current study, a parallel female sterile mutant (fsm2) was derived from EMS mutagenesis of a Chinese cabbage DH line 'FT' seeds. RESULTS: Both fsm2 and fsm1 mutant phenotypes exhibited pistil abortion and smaller floral organs. Genetic analysis indicated that the phenotype of mutant fsm2 was also controlled by a single recessive nuclear gene. Allelism testing showed that the mutated fsm1 and fsm2 genes were allelic. A single-nucleotide mutation (G-to-A) in the first exon of BraA04g009730.3C caused a missense mutation from GAA (glutamic acid) to GGA (glycine) in mutant fsm2 plants. Both allelic mutations of BraA04g009730.3C in fsm1 and fsm2 conferred the similar pistil abortion phenotype, which verified the SAP function in pistil development. To probe the mechanism of SAP-induced pistil abortion, we compared the mutant fsm1 and wild-type 'FT' pistil transcriptomes. Among the 3855 differentially expressed genes obtained, 29 were related to ovule development and 16 were related to organ size. CONCLUSION: Our study clarified the function of BraA04g009730.3C and revealed that it was responsible for ovule development and organ size. These results lay a foundation to elucidate the molecular mechanism of pistil development in Chinese cabbage.


Asunto(s)
Brassica rapa/genética , Flores/crecimiento & desarrollo , Genes de Plantas , Factores de Transcripción/genética , Alelos , Brassica rapa/crecimiento & desarrollo , Flores/genética , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genes Recesivos , Mutación , Desarrollo de la Planta/genética , RNA-Seq , Factores de Transcripción/metabolismo , Transcriptoma
19.
Ecotoxicol Environ Saf ; 206: 111409, 2020 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-33011510

RESUMEN

To improve the effect of coal fly ash on the remediation of heavy metal polluted soils, the active silicate material (ASM) was prepared by coal fly ash and the remediation of lead polluted soils by ASM was investigated in this study. To study the reaction mechanism between ASM and Pb(II) in soil, the Pb(II) adsorption by ASM was investigated by a series of batch experiments. The result shows that the maximum adsorption capacity of ASM was 300.62 mg g-1 according to the Langmuir isotherm model. The average adsorption energy obtained from the D-K model revealed that the adsorption process of ASM is the ion-exchange process. To apply the ASM to the remediation of lead polluted soils, the soil stabilization experiment and pot experiment were carried out. The results reveal that ASM can reduce the mobility and bioavailability of lead in the soils by transforming the lead from exchangeable fraction, carbonate fraction and reducible fraction to oxidizable fraction and residual fraction. Moreover, ASM can improve the growth of pakchoi by promoting the production of chlorophyll. Furthermore, ASM can reduce the Pb accumulation of pakchoi by inhibiting the absorption of lead in the roots. It is anticipated that this study can provide a novel active silicate material for the application of coal fly ash in heavy metal pollution treatment.


Asunto(s)
Ceniza del Carbón/química , Restauración y Remediación Ambiental/métodos , Plomo/análisis , Silicatos/química , Contaminantes del Suelo/análisis , Suelo/química , Adsorción , Disponibilidad Biológica , Brassica rapa/crecimiento & desarrollo
20.
Mol Biol Rep ; 47(9): 6887-6897, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-32914263

RESUMEN

The objective of the present work was the selection of cultivar, suitable medium and explant type for callus, root production, ascorbic acid, total ascorbic acid, dehydroascorbic and total protein of non-heading Chinese cabbage in two cultivars 'Caixin' and 'Suzhouqing'. We compared 10 types of MS media supplemented with 0.0, 1.0, 2.0 and 3.0 mg/l TDZ; 0.0, 0.25, 0.50 and 1.0 mg/l NAA and 0.0, 5.0, 7.5 and 9.0 mg/l AgNO3 and 5 kinds of explants as embryo, leaf, root, cotyledon and hypocotyl. Maximum frequency of callus fresh weight was recorded with hypocotyl explant, which were cultured on MS + 2.0 mg/l TDZ + 1.0 mg/l NAA + 9.0 mg/l AgNO3 in 'Suzhouqing', optimum callus dry weight was obtained on the same media. The highest result for root fresh and dry weight recorded with 'Caixin' with MS + 3.0 mg/l TDZ + 1.0 mg/l NAA + 9.0 mg/l AgNO3 when we used embryo as explant. The highest ascorbic acid content was found with callus cultured on MS + 1.0 mg/l TDZ + 0.25 mg/l NAA + 5.0 mg/l AgNO3, when used leaf explant in 'Caixin' or root in 'Suzhouqing', and there were no significant difference between them. While the highest value of total AsA content was registered with callus cultured on MS + 2.0 mg/l TDZ + 0.25 mg/l NAA + 5.0 mg/l AgNO3 extracted from cotyledon in 'Caixin'. The highest content of DHA was registered with MS + 2.0 mg/l TDZ + 0.25 mg/l NAA + 5.0 mg/l AgNO3 with cotyledon in 'Caixin'. Also, in 'Caixin' MS + 3.0 mg/l TDZ + 0.25 mg/l NAA + 5.0 mg/l AgNO3 recorded the highest value of total protein content with embryo explant.


Asunto(s)
Ácido Ascórbico/análisis , Callo Óseo/efectos de los fármacos , Brassica rapa/metabolismo , Técnicas de Cultivo de Célula/métodos , Reguladores del Crecimiento de las Plantas/farmacología , Raíces de Plantas/efectos de los fármacos , Proteínas/análisis , Ácido Ascórbico/análogos & derivados , Ácido Ascórbico/metabolismo , Callo Óseo/crecimiento & desarrollo , Callo Óseo/metabolismo , Brassica rapa/crecimiento & desarrollo , Células Cultivadas , Naftalenos/farmacología , Compuestos de Fenilurea/farmacología , Células Vegetales/efectos de los fármacos , Células Vegetales/metabolismo , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/metabolismo , Nitrato de Plata/farmacología , Tiadiazoles/farmacología
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