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1.
Cancer Lett ; 500: 119-131, 2021 03 01.
Artículo en Inglés | MEDLINE | ID: mdl-33338532

RESUMEN

Nav1.5, encoded by SCN5A, has been associated with metastasis in colorectal cancer (CRC). Here, we investigated the mechanism by which Nav1.5 regulates tumor progression and whether Nav1.5 influences chemosensitivity to 5-fluorouracil (5-FU) in CRCs. CRC cases were evaluated for Nav1.5 expression. Elevated Nav1.5 expression was associated with poor prognosis in CRCs, whereas stage II/III patients with upregulated SCN5A expression could have better survival after receiving 5-FU-based adjuvant chemotherapy. In CRC cells, SCN5A knockdown reduced the proliferation, migration and invasion. According to RNA sequencing, SCN5A knockdown inhibited both the cell cycle and epithelial-mesenchymal transition. In addition, Nav1.5 stabilized the KRas-calmodulin complex to modulate Ras signaling, promoting Ca2+ influx through the Na+-Ca2+ exchanger and Ca2+ release-activated calcium channel. Meanwhile, SCN5A knockdown increased the 50% inhibitory concentration to 5-FU by upregulating 5-FU-stimulated apoptosis in CRCs. In conclusion, Nav1.5 could progress to proliferation and metastasis through Ca2+/calmodulin-dependent Ras signaling in CRC, and it could also enhance 5-FU-stimulated apoptosis. Clinically, patients with stage II/III CRCs with elevated SCN5A expression demonstrated poor prognosis, yet those patients could benefit more from 5-FU-based chemotherapy than patients with lower SCN5A expression.


Asunto(s)
Calmodulina/genética , Neoplasias Colorrectales/tratamiento farmacológico , Fluorouracilo/farmacología , Canal de Sodio Activado por Voltaje NAV1.5/genética , Proteínas Proto-Oncogénicas p21(ras)/genética , Apoptosis/efectos de los fármacos , Calmodulina/ultraestructura , Línea Celular Tumoral , Movimiento Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Quimioterapia Adyuvante/efectos adversos , Neoplasias Colorrectales/genética , Neoplasias Colorrectales/patología , Progresión de la Enfermedad , Resistencia a Antineoplásicos/efectos de los fármacos , Resistencia a Antineoplásicos/genética , Transición Epitelial-Mesenquimal/efectos de los fármacos , Fluorouracilo/efectos adversos , Regulación Neoplásica de la Expresión Génica/efectos de los fármacos , Humanos , Complejos Multiproteicos/genética , Complejos Multiproteicos/ultraestructura , Invasividad Neoplásica/genética , Invasividad Neoplásica/patología , Proteínas Proto-Oncogénicas p21(ras)/ultraestructura
2.
Biomolecules ; 10(10)2020 10 17.
Artículo en Inglés | MEDLINE | ID: mdl-33080786

RESUMEN

The autosomal-dominant pleiotropic disorder called oculodentodigital dysplasia (ODDD) is caused by mutations in the gap junction protein Cx43. Of the 73 mutations identified to date, over one-third are localized in the cytoplasmic loop (Cx43CL) domain. Here, we determined the mechanism by which three ODDD mutations (M147T, R148Q, and T154A), all of which localize within the predicted 1-5-10 calmodulin-binding motif of the Cx43CL, manifest the disease. Nuclear magnetic resonance (NMR) and circular dichroism revealed that the three ODDD mutations had little-to-no effect on the ability of the Cx43CL to form α-helical structure as well as bind calmodulin. Combination of microscopy and a dye-transfer assay uncovered these mutations increased the intracellular level of Cx43 and those that trafficked to the plasma membrane did not form functional channels. NMR also identify that CaM can directly interact with the Cx43CT domain. The Cx43CT residues involved in the CaM interaction overlap with tyrosines phosphorylated by Pyk2 and Src. In vitro and in cyto data provide evidence that the importance of the CaM interaction with the Cx43CT may lie in restricting Pyk2 and Src phosphorylation, and their subsequent downstream effects.


Asunto(s)
Calmodulina/genética , Conexina 43/genética , Anomalías Craneofaciales/genética , Anomalías del Ojo/genética , Deformidades Congénitas del Pie/genética , Sindactilia/genética , Anomalías Dentarias/genética , Calmodulina/ultraestructura , Movimiento Celular/genética , Conexina 43/ultraestructura , Anomalías Craneofaciales/patología , Citoplasma/genética , Anomalías del Ojo/patología , Quinasa 2 de Adhesión Focal/genética , Deformidades Congénitas del Pie/patología , Uniones Comunicantes/genética , Células HeLa , Humanos , Mutación con Pérdida de Función/genética , Unión Proteica , Conformación Proteica en Hélice alfa , Transporte de Proteínas/genética , Sindactilia/patología , Anomalías Dentarias/patología
3.
FEBS J ; 287(11): 2256-2280, 2020 06.
Artículo en Inglés | MEDLINE | ID: mdl-31763755

RESUMEN

The Ca2+ -sensing protein calmodulin (CaM) inhibits cardiac ryanodine receptor (RyR2)-mediated Ca2+ release. CaM mutations associated with arrhythmias and sudden cardiac death have been shown to diminish CaM-dependent inhibition of RyR2, but the underlying mechanisms are not well understood. Nearly all arrhythmogenic CaM mutations identified are located in the C-domain of CaM and exert marked effects on Ca2+ binding to CaM and on the CaM C-domain interaction with the CaM-binding domain 2 (CaMBD2) in RyR2. Interestingly, the arrhythmogenic N-domain mutation CaM-N54I has little or no effect on Ca2+ binding to CaM or the CaM C-domain-RyR2 CaMBD2 interaction, unlike all CaM C-domain mutations. This suggests that CaM-N54I may diminish CaM-dependent RyR2 inhibition by affecting CaM N-domain interactions with RyR2 CaMBDs other than CaMBD2. To explore this possibility, we assessed the effects of deleting each of the four known CaMBDs in RyR2 (CaMBD1a, -1b, -2, or -3) on the CaM-dependent inhibition of RyR2-mediated Ca2+ release in HEK293 cells. We found that removing CaMBD1a, CaMBD1b, or CaMBD3 did not alter the effects of CaM-N54I or CaM-WT on RyR2 inhibition. On the other hand, deleting RyR2-CaMBD2 abolished the effects of both CaM-N54I and CaM-WT. Our results support that CaM-N54I causes aberrant RyR2 regulation via an uncharacterized CaMBD or less likely CaMBD2, and that RyR2 CaMBD2 is required for the actions of both N- and C-domain CaM mutations. Moreover, our results show that CaMBD1a is central to RyR2 regulation, but CaMBD1a, CaMBD1b, and CaMBD3 are not required for CaM-dependent inhibition of RyR2 in HEK293 cells.


Asunto(s)
Arritmias Cardíacas/genética , Señalización del Calcio/genética , Calmodulina/ultraestructura , Canal Liberador de Calcio Receptor de Rianodina/ultraestructura , Animales , Arritmias Cardíacas/patología , Calcio/metabolismo , Calmodulina/química , Calmodulina/genética , Células HEK293 , Humanos , Mutación/genética , Unión Proteica/genética , Conformación Proteica , Dominios Proteicos/genética , Canal Liberador de Calcio Receptor de Rianodina/química , Canal Liberador de Calcio Receptor de Rianodina/genética
4.
Science ; 360(6388): 508-513, 2018 05 04.
Artículo en Inglés | MEDLINE | ID: mdl-29724949

RESUMEN

Small-conductance Ca2+-activated K+ (SK) channels mediate neuron excitability and are associated with synaptic transmission and plasticity. They also regulate immune responses and the size of blood cells. Activation of SK channels requires calmodulin (CaM), but how CaM binds and opens SK channels has been unclear. Here we report cryo-electron microscopy (cryo-EM) structures of a human SK4-CaM channel complex in closed and activated states at 3.4- and 3.5-angstrom resolution, respectively. Four CaM molecules bind to one channel tetramer. Each lobe of CaM serves a distinct function: The C-lobe binds to the channel constitutively, whereas the N-lobe interacts with the S4-S5 linker in a Ca2+-dependent manner. The S4-S5 linker, which contains two distinct helices, undergoes conformational changes upon CaM binding to open the channel pore. These structures reveal the gating mechanism of SK channels and provide a basis for understanding SK channel pharmacology.


Asunto(s)
Calmodulina/química , Canales de Potasio de Conductancia Intermedia Activados por el Calcio/química , Acetamidas/química , Calmodulina/agonistas , Calmodulina/ultraestructura , Microscopía por Crioelectrón , Humanos , Canales de Potasio de Conductancia Intermedia Activados por el Calcio/agonistas , Canales de Potasio de Conductancia Intermedia Activados por el Calcio/ultraestructura , Bloqueadores de los Canales de Potasio/química , Dominios Proteicos , Tiazinas/química , Compuestos de Tritilo/química
5.
Biochem Biophys Res Commun ; 486(4): 992-997, 2017 05 13.
Artículo en Inglés | MEDLINE | ID: mdl-28363865

RESUMEN

Amyloid ß-peptides (Aß) are a major hallmark of Alzheimer's disease (AD) and their neurotoxicity develop with cytosolic calcium dysregulation. On the other hand, calmodulin (CaM), a protein which plays a major multifunctional role in neuronal calcium signaling, has been shown to be involved in the regulation of non-amyloidogenic processing of amyloid ß precursor protein (APP). Using fluorescent 6-bromoacetyl-2-dimethylaminonaphthalene derivatives of CaM, Badan-CaM, and human amyloid ß(1-42) HiLyte™-Fluor555, we show in this work that Aß binds with high affinity to CaM through the neurotoxic Aß25-35 domain. In addition, the affinity of Aß for calcium-saturated CaM conformation is approximately 20-fold higher than for CaM conformation in the absence of calcium (apo-CaM). Moreover, the value of Kd of 0.98 ± 0.11 nM obtained for Aß1-42 dissociation from CaM saturated by calcium points out that CaM is one of the cellular targets with highest affinity for neurotoxic Aß peptides. A major functional consequence of Aß-CaM interaction is that it slowdowns Aß fibrillation. The novel and high affinity interaction between calmodulin and Aß shown in this work opens a yet-unexplored gateway to further understand the neurotoxic effect of Aß in different neural cells and also to address the potential of calmodulin and calmodulin-derived peptides as therapeutic agents in AD.


Asunto(s)
Péptidos beta-Amiloides/química , Péptidos beta-Amiloides/ultraestructura , Calcio/química , Calmodulina/química , Calmodulina/ultraestructura , Simulación del Acoplamiento Molecular/métodos , Sitios de Unión , Modelos Químicos , Unión Proteica , Conformación Proteica , Dominios Proteicos , Relación Estructura-Actividad
6.
Nanoscale ; 6(24): 15037-47, 2014 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-25367003

RESUMEN

Nanoparticles are increasingly used in biomedical applications and are especially attractive as biocompatible and biodegradable protein delivery systems. Herein, the interaction between biocompatible 25 nm CaF2 nanoparticles and the ubiquitous calcium sensor calmodulin has been investigated in order to assess the potential of these particles to serve as suitable surface protein carriers. Calmodulin is a multifunctional messenger protein that activates a wide variety of signaling pathways in eukaryotic cells by changing its conformation in a calcium-dependent manner. Isothermal titration calorimetry and circular dichroism studies have shown that the interaction between calmodulin and CaF2 nanoparticles occurs with physiologically relevant affinity and that the binding process is fully reversible, occurring without significant alterations in protein secondary and tertiary structures. Experiments performed with a mutant form of calmodulin having an impaired Ca(2+)-binding ability in the C-terminal lobe suggest that the EF-hand Ca(2+)-binding motifs are directly involved in the binding of calmodulin to the CaF2 matrix. The residual capability of nanoparticle-bound calmodulin to function as a calcium sensor protein, binding to and altering the activity of a target protein, was successfully probed by biochemical assays. Even if efficiently carried by CaF2 nanoparticles, calmodulin may dissociate, thus retaining the ability to bind the peptide encompassing the putative C-terminal calmodulin-binding domain of glutamate decarboxylase and activate the enzyme. We conclude that the high flexibility and structural plasticity of calmodulin are responsible for the preservation of its function when bound in high amounts to a nanoparticle surface.


Asunto(s)
Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/ultraestructura , Fluoruro de Calcio/química , Calmodulina/química , Calmodulina/ultraestructura , Materiales Biocompatibles Revestidos/síntesis química , Nanocápsulas/química , Nanocápsulas/ultraestructura , Adsorción , Sitios de Unión , Calcio/química , Módulo de Elasticidad , Tamaño de la Partícula , Unión Proteica , Propiedades de Superficie
8.
BMC Syst Biol ; 2: 48, 2008 Jun 02.
Artículo en Inglés | MEDLINE | ID: mdl-18518982

RESUMEN

BACKGROUND: Calmodulin is an important multifunctional molecule that regulates the activities of a large number of proteins in the cell. Calcium binding induces conformational transitions in calmodulin that make it specifically active to particular target proteins. The precise mechanisms underlying calcium binding to calmodulin are still, however, quite poorly understood. RESULTS: In this study, we adopt a structural systems biology approach and develop a mathematical model to investigate various types of cooperative calcium-calmodulin interactions. We compare the predictions of our analysis with physiological dose-response curves taken from the literature, in order to provide a quantitative comparison of the effects of different mechanisms of cooperativity on calcium-calmodulin interactions. The results of our analysis reduce the gap between current understanding of intracellular calmodulin function at the structural level and physiological calcium-dependent calmodulin target activation experiments. CONCLUSION: Our model predicts that the specificity and selectivity of CaM target regulation is likely to be due to the following factors: variations in the target-specific Ca2+ dissociation and cooperatively effected dissociation constants, and variations in the number of Ca2+ ions required to bind CaM for target activation.


Asunto(s)
Calcio/química , Calmodulina/química , Calmodulina/ultraestructura , Modelos Químicos , Modelos Moleculares , Biología de Sistemas/métodos , Sitios de Unión , Simulación por Computador , Unión Proteica
9.
Biophys J ; 94(12): 4847-66, 2008 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-18326633

RESUMEN

The 18.5 kDa isoform of myelin basic protein (MBP) is the predominant form in adult human central nervous system myelin. It is an intrinsically disordered protein that functions both in membrane adhesion, and as a linker connecting the oligodendrocyte membrane to the underlying cytoskeleton; its specific interactions with calmodulin and SH3-domain containing proteins suggest further multifunctionality in signaling. Here, we have used multidimensional heteronuclear nuclear magnetic resonance spectroscopy to study the conformational dependence on environment of the protein in aqueous solution (100 mM KCl) and in a membrane-mimetic solvent (30% TFE-d(2)), particularly to analyze its secondary structure using chemical shift indexing, and to investigate its backbone dynamics using (15)N spin relaxation measurements. Collectively, the data revealed three major segments of the protein with a propensity toward alpha-helicity that was stabilized by membrane-mimetic conditions: T33-D46, V83-T92, and T142-L154 (murine 18.5 kDa sequence numbering). All of these regions corresponded with bioinformatics predictions of ordered secondary structure. The V83-T92 region comprises a primary immunodominant epitope that had previously been shown by site-directed spin labeling and electron paramagnetic resonance spectroscopy to be alpha-helical in membrane-reconstituted systems. The T142-L154 segment overlapped with a predicted calmodulin-binding site. Chemical shift perturbation experiments using labeled MBP and unlabeled calmodulin demonstrated a dramatic conformational change in MBP upon association of the two proteins, and were consistent with the C-terminal segment of MBP being the primary binding site for calmodulin.


Asunto(s)
Calmodulina/química , Calmodulina/ultraestructura , Modelos Químicos , Modelos Moleculares , Vaina de Mielina/química , Vaina de Mielina/ultraestructura , Sitios de Unión , Simulación por Computador , Unión Proteica , Isoformas de Proteínas/química , Isoformas de Proteínas/ultraestructura
10.
Biochem Biophys Res Commun ; 360(1): 70-5, 2007 Aug 17.
Artículo en Inglés | MEDLINE | ID: mdl-17592724

RESUMEN

Patients with acute vitiligo have low epidermal catalase expression/activities and accumulate 10(-3) M H(2)O(2). One consequence of this severe oxidative stress is an altered calcium homeostasis in epidermal keratinocytes and melanocytes. Here, we show decreased epidermal calmodulin expression in acute vitiligo. Since 10(-3)M H(2)O(2) oxidises methionine and tryptophan residues in proteins, we examined calcium binding to calmodulin in the presence and absence of H(2)O(2) utilising (45)calcium. The results showed that all four calcium atoms exchanged per molecule of calmodulin. Since oxidised calmodulin looses its ability to activate calcium ATPase, enzyme activities were followed in full skin biopsies from lesional skin of patients with acute vitiligo (n=6) and healthy controls (n=6). The results yielded a 4-fold decrease of ATPase activities in the patients. Computer simulation of native and oxidised calmodulin confirmed the loss of all four calcium ions from their specific EF-hand domains. Taken together H(2)O(2)-mediated oxidation affects calcium binding in calmodulin leading to perturbed calcium homeostasis and perturbed l-phenylalanine-uptake in the epidermis of acute vitiligo.


Asunto(s)
Calcio/metabolismo , Calmodulina/metabolismo , Peróxido de Hidrógeno/administración & dosificación , Estrés Oxidativo/efectos de los fármacos , Piel/metabolismo , Vitíligo/metabolismo , Calcio/química , Calmodulina/química , Calmodulina/ultraestructura , Células Cultivadas , Simulación por Computador , Relación Dosis-Respuesta a Droga , Humanos , Modelos Químicos , Modelos Moleculares , Unión Proteica/efectos de los fármacos , Piel/efectos de los fármacos
11.
Biochem Biophys Res Commun ; 358(4): 1102-7, 2007 Jul 13.
Artículo en Inglés | MEDLINE | ID: mdl-17521610

RESUMEN

Calmodulin (CaM) plays a crucial role in metabolism and physiology of eukaryotes by regulating biological activities. Multiple lines of evidences indicate that the phosphorylated flavonoids possess relatively stronger affinities for proteins by forming non-covalent complexes with them, and that the cellular functions are often triggered by this kind of interactions. Chrysin is one of the phosphorylated flavonoids that exist ubiquitously in plants and have remarkably beneficial pharmacological effects. In this study, the molecular docking tools were utilized to investigate the interactions of CaM with chrysin. Two different favorable binding modes have been observed. To complement the results obtained by the molecular docking study, an in-depth investigation into the binding modes was conducted with the molecular dynamics (MD) simulation to explore the binding profile and energy landscape. Based on the results thus obtained, a clear definition of the binding pocket for each of the two binding modes has been revealed. These findings may shed light upon the binding interactions of CaM with chrysin, providing a solid molecular basis for subset analysis of its pharmacological benefits.


Asunto(s)
Calmodulina/química , Calmodulina/ultraestructura , Flavonoides/química , Modelos Químicos , Modelos Moleculares , Sitios de Unión , Simulación por Computador , Enlace de Hidrógeno , Unión Proteica , Conformación Proteica , Mapeo de Interacción de Proteínas
12.
Eur Biophys J ; 36(3): 225-37, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17285296

RESUMEN

The paper reports the results of numerical calculations of the pKa's of the ionizable groups and the electrostatic interactions between calmodulin lobes in three different states of calmodulin: calcium-free, peptide-free; calcium-loaded, peptide-free; and calcium-loaded, peptide-bound. NMR and X-ray studies revealed that in these states the overall structure of calmodulin adopts various conformations referred as: disordered semi-compact, extended and compact conformations, respectively. In addition, a new X-ray structure was recently reported (Structure, 2003, 11, 1303) showing that calcium-loaded, peptide-free calmodulin can also adopt a compact conformation in addition to the well known extended conformation. The calculated energy changes of calcium-loaded, peptide-free calmodulin along the pathway connecting these two conformations provide a possible explanation for this structural plasticity. The effect of pH and organic compounds in the solution phase on the preference of calmodulin to adopt compact or extended conformations may be thus rationalized. Analysis of the contribution of the ionization changes to the energy of association of calmodulin lobes suggested that the formation of the compact forms requires protonation of several acidic residues. However, two different protonation scenarios are revealed: a protonation due to internal lobe organization and thus independent of the lobes association, and a protonation induced by the lobes association resulting to a proton uptake. In addition, the role of the individual residues on the energy of association of calmodulin lobes is calculated in two compact conformations (peptide-free and peptide-bound) and is shown that a set of residues always plays a dominant role in inter-domain interactions.


Asunto(s)
Calmodulina/química , Calmodulina/ultraestructura , Modelos Químicos , Modelos Moleculares , Electricidad Estática , Calmodulina/efectos de la radiación , Simulación por Computador , Conformación Proteica/efectos de la radiación
13.
J Biol Chem ; 280(39): 33289-97, 2005 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-16055436

RESUMEN

Microautophagy is the uptake of cytosolic compounds by direct invagination of the vacuolar/lysosomal membrane. In Saccharomyces cerevisiae microautophagic uptake of soluble cytosolic proteins occurs via an autophagic tube, a highly specialized vacuolar membrane invagination. Autophagic tubes are topologically equivalent to the invaginations at multivesicular endosomes. At the tip of an autophagic tube, vesicles (autophagic bodies) pinch off into the vacuolar lumen for degradation. In this study we have identified calmodulin (Cmd1p) as necessary for microautophagy. Temperature-sensitive mutants for Cmd1p displayed reduced frequencies of vacuolar tube formation and/or abnormal tube morphologies. Microautophagic vacuole invagination was sensitive to Cmd1p antagonists as well as to antibodies to Cmd1p. cmd1 mutants with substitutions in the Ca2+-binding domains showed full invagination activity, and vacuolar membrane invagination was independent of the free Ca2+ concentration. Thus, rather than acting as a calcium-triggered switch, Cmd1p has a constitutive Ca2+-independent role in the formation of autophagic tubes. Kinetic analysis indicates that calmodulin is required for autophagic tube formation rather than for the final scission of vesicles from the tip of the tube.


Asunto(s)
Autofagia , Calcio/metabolismo , Calmodulina/metabolismo , Saccharomyces cerevisiae/citología , Saccharomyces cerevisiae/metabolismo , Vacuolas/metabolismo , Sustitución de Aminoácidos , Autofagia/efectos de los fármacos , Calmodulina/química , Calmodulina/genética , Calmodulina/aislamiento & purificación , Calmodulina/ultraestructura , Quelantes/farmacología , Citosol/metabolismo , Ácido Egtácico/análogos & derivados , Ácido Egtácico/farmacología , Endosomas/efectos de los fármacos , Endosomas/metabolismo , Escherichia coli/genética , Cinética , Microscopía Fluorescente , Modelos Biológicos , Estructura Terciaria de Proteína , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crecimiento & desarrollo , Saccharomyces cerevisiae/ultraestructura , Vacuolas/efectos de los fármacos , Vacuolas/ultraestructura
14.
Biophys J ; 89(2): 1214-26, 2005 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-15894636

RESUMEN

Calmodulin (CaM) interacts specifically as a dimer with some dimeric basic-Helix-Loop-Helix (bHLH) transcription factors via a novel high affinity binding mode. Here we report a study of the backbone dynamics by (15)N-spin relaxation on the CaM dimer in complex with a dimeric peptide that mimics the CaM binding region of the bHLH transcription factor SEF2-1. The relaxation data were measured at multiple magnetic fields, and analyzed in a model-free manner using in-house written software designed to detect nanosecond internal motion. Besides picosecond motions, all residues also experience internal motion with an effective correlation time of approximately 2.5 ns with squared order parameter (S(2)) of approximately 0.75. Hydrodynamic calculations suggest that this can be attributed to motions of the N- and C-terminal domains of the CaM dimer in the complex. Moreover, residues with significant exchange broadening are found. They are clustered in the CaM:SEF2-1mp binding interface, the CaM:CaM dimer interface, and in the flexible helix connecting the CaM N- and C-terminal domains, and have similar exchange times (approximately 50 micros), suggesting a cooperative mechanism probably caused by protein:protein interactions. The dynamic features presented here support the conclusion that the conformationally heterogeneous bHLH mimicking peptide trapped inside the CaM dimer exchanges between different binding sites on both nanosecond and microsecond timescales. Nature has thus found a way to specifically recognize a relatively ill-fitting target. This novel mode of target-specific binding, which neither belongs to lock-and-key nor induced-fit binding, is characterized by dimerization and continuous exchange between multiple flexible binding alternatives.


Asunto(s)
Calmodulina/química , Calmodulina/ultraestructura , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/ultraestructura , Modelos Químicos , Modelos Moleculares , Factores de Transcripción/química , Factores de Transcripción/ultraestructura , Sitios de Unión , Calmodulina/análisis , Simulación por Computador , Proteínas de Unión al ADN/análisis , Dimerización , Cinética , Movimiento (Física) , Complejos Multiproteicos/análisis , Complejos Multiproteicos/química , Complejos Multiproteicos/ultraestructura , Unión Proteica , Estructura Terciaria de Proteína , Factores de Transcripción TCF , Proteína 2 Similar al Factor de Transcripción 7 , Factores de Transcripción/análisis
15.
J R Soc Interface ; 2(5): 465-76, 2005 Dec 22.
Artículo en Inglés | MEDLINE | ID: mdl-16849206

RESUMEN

Calmodulin (CaM) is an acidic ubiquitous calcium binding protein, involved in many intracellular processes, which often involve the formation of complexes with a variety of protein and peptide targets. One such system, activated by Ca2+ loaded CaM, is regulation of the nitric oxide synthase (NOS) enzymes, which in turn control the production of the signalling molecule and cytotoxin NO. A recent crystallographic study mapped the interaction of CaM with endothelial NOS (eNOS) using a 20 residue peptide comprising the binding site within eNOS. Here the interaction of CaM to the FMN domain of neuronal nitric oxide synthase (nNOS) has been investigated using electrospray ionization mass spectrometry (ESI-MS). The 46 kDa complex formed by CaM-nNOS has been retained in the gas-phase, and is shown to be exclusively selective for CaM.4Ca2+. Further characterization of this important biological system has been afforded by examining a complex of CaM with a 22 residue synthetic peptide, which represents the linker region between the reductase and oxygenase domains of nNOS. This nNOS linker peptide, which is found to be random coil in aqueous solution by both circular dichroism and molecular modelling, also exhibits great discrimination for the form of CaM loaded with 4[Ca2+]. The peptide binding loop is presumed to be configured to an alpha-helix on binding to CaM as was found for the related eNOS binding peptide. Our postulate is supported by gas-phase molecular dynamics calculations performed on the isolated nNOS peptide. Collision induced dissociation was employed to probe the strength of binding of the nNOS binding peptide to CaM.4Ca2+. The methodology taken here is a new approach in understanding the CaM-nNOS binding site, which could be employed in future to inform the specificity of CaM binding to other NOS enzymes.


Asunto(s)
Calmodulina/química , Calmodulina/ultraestructura , Modelos Químicos , Modelos Moleculares , Óxido Nítrico Sintasa de Tipo I/química , Óxido Nítrico Sintasa de Tipo I/ultraestructura , Espectrometría de Masa por Ionización de Electrospray/métodos , Sitios de Unión , Simulación por Computador , Activación Enzimática , Complejos Multiproteicos/química , Complejos Multiproteicos/ultraestructura , Unión Proteica , Conformación Proteica
16.
J Microsc ; 216(Pt 3): 199-205, 2004 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-15566490

RESUMEN

ReAsH is a red-emitting dye that binds to the unique sequence Cys-Cys-Xaa-Xaa-Cys-Cys (where Xaa is a noncysteine amino acid) in the protein. We attached a single ReAsH to a calmodulin with an inserted tetracysteine motif and immobilized individual calmodulins to a glass surface at low density. Total internal reflection fluorescence microscopy was used to image individual ReAsH molecules. We determined the centre of the distribution of photons in the image of a single molecule in order to determine the position of the dye within 5 nm precision and with an image integration time of 0.5 s. The photostability of ReAsH was also characterized and observation times ranging from several seconds to over a minute were observed. We found that 2-mercaptoethanesulphonic acid increased the number of collected photons from ReAsH molecules by a factor of two. Individual ReAsH molecules were then moved via a nanometric stage in 25 or 40 nm steps, either at a constant rate or at a Poisson-distributed rate. Individual steps were clearly seen, indicating that the observation of translational motion on this scale, which is relevant for many biomolecular motors, is possible with ReAsH.


Asunto(s)
Calmodulina/ultraestructura , Secuencia de Aminoácidos , Calmodulina/química , Microscopía Fluorescente/métodos , Datos de Secuencia Molecular , Fotones
17.
J Struct Biol ; 135(3): 231-8, 2001 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-11722163

RESUMEN

Calmodulin is a tightly bound, intrinsic subunit (delta) of the hexadecameric phosphorylase-b kinase holoenzyme, (alphabetagammadelta)4. To introduce specifically labeled calmodulin into the phosphorylase-b kinase complex for its eventual visualization by electron microscopy, we have developed a method for rapidly exchanging exogenous calmodulin for the intrinsic delta subunit. This method exploits previous findings that low concentrations of urea in the absence of Ca(2+) ions cause the specific dissociation of only the delta subunit from the holoenzyme [Paudel, H. K., and Carlson, G. M. (1990) Biochem. J. 268, 393-399]. In the current study, phosphorylase-b kinase was incubated with excess exogenous calmodulin and a threshold concentration of urea to promote exchange of its delta subunit with the exogenous calmodulin. Size exclusion HPLC was then used to remove the excess calmodulin from the holoenzyme containing exchanged delta subunits. Using metabolically labeled [35S]calmodulin to allow quantification and optimization of exchange conditions, we achieved exchange of approximately 10% of all delta subunits within 1 h, with the exchanged holoenzyme retaining full catalytic activity. Calmodulins derivatized with Nanogold for visualization by scanning transmission electron microscopy were then exchanged for delta, which for the first time allowed localization of the delta subunit within the bridged, bilobal phosphorylase b kinase holoenzyme complex. The delta subunits were determined to be near the edge of the lobes, just distal to the interlobal bridges and proximal to a previously identified region of the enzyme's catalytic gamma subunit.


Asunto(s)
Calmodulina/química , Calmodulina/ultraestructura , Fosforilasa Quinasa/química , Fosforilasa Quinasa/ultraestructura , Animales , Calmodulina/aislamiento & purificación , Cromatografía Líquida de Alta Presión , Oro , Holoenzimas/química , Holoenzimas/ultraestructura , Microscopía Electrónica , Microscopía Electrónica de Transmisión de Rastreo , Modelos Moleculares , Músculo Esquelético/enzimología , Fosforilasa Quinasa/aislamiento & purificación , Estructura Cuaternaria de Proteína , Subunidades de Proteína , Conejos , Radioisótopos de Azufre
18.
J Mol Biol ; 294(1): 139-49, 1999 Nov 19.
Artículo en Inglés | MEDLINE | ID: mdl-10556034

RESUMEN

Limulus sperm contains a dynamic macromolecular structure that rapidly extends a 50 microm process called the true discharge. The core of this structure is a bundle of ordered filaments composed of a complex of actin, scruin and calmodulin. We determined its structure by electron crystallographic reconstruction. The three-dimensional map reveals an actin-scruin helix that is azimuthally modulated by the influence of the interactions of a filament with its neighbors. There are a variety of density connections with neighboring filaments involving scruin. Scruin commonly contacts one neighbor, but we observe up to three interfilament connections involving both domains of the 28 scruin molecules in the unit cell. Our structure indicates that promiscuous scruin-scruin contacts are the major determinants of bundle stability in the true discharge. It also suggests that rearrangements would be permitted, which can facilitate the transition from the coiled to the true discharge form.


Asunto(s)
Acrosoma/ultraestructura , Actinas/ultraestructura , Calmodulina/ultraestructura , Cangrejos Herradura/fisiología , Animales , Microscopía por Crioelectrón , Cristalografía , Procesamiento de Imagen Asistido por Computador , Masculino , Modelos Moleculares , Modelos Estructurales
19.
Proc Natl Acad Sci U S A ; 95(9): 4847-52, 1998 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-9560191

RESUMEN

Troponin (Tn), the complex of three subunits (TnC, TnI, and TnT), plays a key role in Ca2+-dependent regulation of muscle contraction. To elucidate the interactions between the Tn subunits and the conformation of TnC in the Tn complex, we have determined the crystal structure of TnC (two Ca2+ bound state) in complex with the N-terminal fragment of TnI (TnI1-47). The structure was solved by the single isomorphous replacement method in combination with multiple wavelength anomalous dispersion data. The refinement converged to a crystallographic R factor of 22.2% (Rfree = 32.6%). The central, connecting alpha-helix observed in the structure of uncomplexed TnC (TnCfree) is unwound at the center (residues Ala-87, Lys-88, Gly-89, Lys-90, and Ser-91) and bent by 90 degrees. As a result, TnC in the complex has a compact globular shape with direct interactions between the N- and C-terminal lobes, in contrast to the elongated dumb-bell shaped molecule of uncomplexed TnC. The 31-residue long TnI1-47 alpha-helix stretches on the surface of TnC and stabilizes its compact conformation by multiple contacts with both TnC lobes. The amphiphilic C-end of the TnI1-47 alpha-helix is bound in the hydrophobic pocket of the TnC C-lobe through 38 van der Waals interactions. The results indicate the major difference between Ca2+ receptors integrated with the other proteins (TnC in Tn) and isolated in the cytosol (calmodulin). The TnC/TnI1-47 structure implies a mechanism of how Tn regulates the muscle contraction and suggests a unique alpha-helical regulatory TnI segment, which binds to the N-lobe of TnC in its Ca2+ bound conformation.


Asunto(s)
Troponina C/ultraestructura , Troponina I/ultraestructura , Secuencia de Aminoácidos , Calmodulina/ultraestructura , Cristalografía por Rayos X , Modelos Moleculares , Datos de Secuencia Molecular , Contracción Muscular , Resonancia Magnética Nuclear Biomolecular , Unión Proteica , Conformación Proteica , Proteínas Recombinantes
20.
Neuroscience ; 79(4): 1207-18, 1997 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-9219979

RESUMEN

Calmodulin and de-phosphorylated B-50/growth-associated protein-43 (GAP-43) have been shown to bind in vitro in a molecular complex, but evidence for an in situ association in the nervous system does not exist. Previously, we have reported that, in the model of the regenerating rat sciatic nerve, the B-50/GAP-43 immunoreactivity is increased and concentrated at the axolemma of unmyelinated axons located proximal to the site of injury and axon outgrowth. To explore a putative function of B-50/GAP-43, namely, the capacity of binding calmodulin to the plasma membrane, we examined the ultrastructural distribution of calmodulin in the proximal unmyelinated axon shafts of this model, using double immunolabelling and detection by fluorescent or gold probes conjugated to second antibodies. Immunofluorescence showed that seven days post-sciatic nerve crush the calmodulin immunoreactivity, similar to B-50/GAP-43 immunoreactivity, was intense in unmyelinated axon shafts located proximal to the site of injury of the regenerating nerve. Ultrastructurally, calmodulin was located at the axolemma of these regenerating unmyelinated axon shafts and inside the axoplasm, where it was associated with vesicles and microtubules. The plasma membrane labelling (approximately 69%) was significantly higher than the axoplasmic labelling. Over 60% of the plasma membrane-associated calmodulin co-localized with B-50/GAP-43 in a non-random distribution. Since normally calmodulin is largely present in the cytoplasm, these data suggest that calmodulin has been concentrated at the plasma membrane of unmyelinated axons, most probably by B-50/GAP-43. If the concentrating effect is due to B-50/GAP-43, then there is a possibility that these proteins may be present as a molecular complex in situ. The physiological significance could be that this association regulates the local availability of both B-50/GAP-43 and calmodulin for other interactions.


Asunto(s)
Axones/ultraestructura , Calmodulina/ultraestructura , Membrana Celular/ultraestructura , Glicoproteínas de Membrana/ultraestructura , Regeneración Nerviosa/fisiología , Proteínas del Tejido Nervioso/ultraestructura , Nervio Ciático/ultraestructura , Animales , Membrana Celular/metabolismo , Modelos Animales de Enfermedad , Proteína GAP-43 , Inmunohistoquímica , Masculino , Microscopía Electrónica , Ratas , Ratas Wistar , Nervio Ciático/fisiología
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