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1.
Environ Sci Pollut Res Int ; 28(20): 25349-25367, 2021 May.
Artículo en Inglés | MEDLINE | ID: mdl-33454827

RESUMEN

Pergularia tomentosa L. (P. tomentosa) has been largely used in Tunisian folk medicine as remedies against skin diseases, asthma, and bronchitis. The main objectives of this study were to identify phytochemical compounds that have antioxidant and antimicrobial properties from the stem, leaves, and fruit crude methanolic extracts of P. tomentosa, and to search for tyrosyl-tRNA synthetase (TyrRS), topoisomerase type IIA, and Candidapepsin-1 (SAP1) enzyme inhibitors through molecular docking study. Phytochemical quantification revealed that fruit and leaves extracts displayed the highest total flavonoids (582 mg QE/g Ex; 219 mg QE/g Ex) and tannins content (375 mg TAE/g Ex; 216 mg TAE/g Ex), also exhibiting significant scavenging activity to decrease free radicals for ABTS, DPPH, ß-carotene, and FRAP assay with IC50 values (> 1 mg/mL). Additionally, promising antimicrobial activities towards different organs have been observed against several bacteria and Candida strains. From the liquid chromatography-mass spectrometry (LC-MS) analysis, five polyphenolic compounds, namely digitoxigenin, digitonin glycoside and calactina in the leaves, kaempferol in the fruit, and calotropagenin in the stems, were identified. They were also analyzed for their drug likeliness, based on computational methods. Molecular docking study affirmed that the binding affinity of calactin and actodigin to the active site of TyrRS, topoisomerase type IIA, and SAP1 target virulence proteins was the highest among the examined dominant compounds. Therefore, this study indicated that P. tomentosa methanolic extracts displayed great potential to become a potent antimicrobial agent and might be a promising source for therapeutic and nutritional functions. These phytocompounds could be further promoted as a candidate for drug discovery and development.


Asunto(s)
Antiinfecciosos , Caryophyllaceae/clasificación , Tirosina-ARNt Ligasa , Antiinfecciosos/farmacología , Antioxidantes/farmacología , Bacterias/efectos de los fármacos , Candida/efectos de los fármacos , Frutas , Simulación del Acoplamiento Molecular , Fitoquímicos/farmacología , Extractos Vegetales/farmacología , Hojas de la Planta , Virulencia , Factores de Virulencia
2.
PLoS One ; 15(8): e0237527, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32810170

RESUMEN

Endemic and restricted-range species are considered to be particularly vulnerable to the effects of environmental change, which makes assessing likely climate change effects on geographic distributions of such species important to the development of integrated conservation strategies. Here, we determined distributional patterns for an endemic species of Dianthus (Dianthus polylepis) in the Irano-Turanian region using a maximum-entropy algorithm. In total, 70 occurrence points and 19 climatic variables were used to estimate the potential distributional area under current conditions and two future representative concentration pathway (RCP2.6 and RCP8.5) scenarios under seven general circulation models for 2050. Mean diurnal range, iso-thermality, minimum temperature of coldest quarter, and annual precipitation were major factors that appeared to structure the distribution of the species. Most current potential suitable areas were located in montane regions. Model transfers to future-climate scenarios displayed upward shifts in elevation and northward shifts geographically for the species. Our results can be used to define high-priority areas in the Irano-Turanian region for conservation management plans for this species and can offer a template for analyses of other endangered and threatened species in the region.


Asunto(s)
Cambio Climático , Dianthus/fisiología , Altitud , Caryophyllaceae/clasificación , Caryophyllaceae/fisiología , Conservación de los Recursos Naturales , Demografía , Dianthus/clasificación , Ecosistema , Especies en Peligro de Extinción , Geografía , Irán , Análisis Espacial , Turkmenistán
3.
Sci Rep ; 10(1): 11522, 2020 07 13.
Artículo en Inglés | MEDLINE | ID: mdl-32661280

RESUMEN

The complete plastome sequences of six species were sequenced to better understand the evolutionary relationships and mutation patterns in the chloroplast genome of the genus Colobanthus. The length of the chloroplast genome sequences of C. acicularis, C. affinis, C. lycopodioides, C. nivicola, C. pulvinatus and C. subulatus ranged from 151,050 to 151,462 bp. The quadripartite circular structure of these genome sequences has the same overall organization and gene content with 73 protein-coding genes, 30 tRNA genes, four rRNA genes and five conserved chloroplast open reading frames. A total of 153 repeat sequences were revealed. Forward repeats were dominant, whereas complementary repeats were found only in C. pulvinatus. The mononucleotide SSRs composed of A/T units were most common, and hexanucleotide SSRs were detected least often. Eleven highly variable regions which could be utilized as potential markers for phylogeny reconstruction, species identification or phylogeography were identified within Colobanthus chloroplast genomes. Seventy-three protein-coding genes were used in phylogenetic analyses. Reconstructed phylogeny was consistent with the systematic position of the studied species, and the representatives of the same genus were grouped in one clade. All studied Colobanthus species formed a single group and C. lycopodioides was least similar to the remaining species.


Asunto(s)
Caryophyllaceae/genética , Cloroplastos/genética , Evolución Molecular , Genoma del Cloroplasto/genética , Caryophyllaceae/clasificación , Tamaño del Genoma/genética , Anotación de Secuencia Molecular , Sistemas de Lectura Abierta/genética , Filogeografía
4.
Microsc Res Tech ; 83(5): 481-489, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-31919947

RESUMEN

Using light and scanning electron microscopy, we studied the pollen morphology of six species (one of which are endemic) of Chinese Pseudostellaria. All species were studied for the first time. Results of this study indicated that pollen grains of Pseudostellaria are spheroidal or spheroidal-polyhedral in shape and small or medium in size and pantoporate. Each pollen grain has 12-16 round pores. These pores are apart from each other by 5.77-7.73 µm and each has 7-13 granules in the operculum region. These features have important taxonomic significance. In addition, their pollen grains have thin exine with microechinate-punctate-perforate surface ornamentation. Pollen features do not support the traditional infrageneric classification of Pseudostellaria into two sections, but support that Pseudostellaria is closely related to other species of the Odontostemma clade.


Asunto(s)
Caryophyllaceae/clasificación , Polen/ultraestructura , Microscopía Electrónica de Rastreo , Especificidad de la Especie
5.
Microsc Res Tech ; 82(3): 250-259, 2019 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-30597704

RESUMEN

Seed micromorphology of 13 species, belonging to four genera of subfamily Alsinoideae (Caryophyllaceae) were investigated with scanning electron microscopy (SEM), in order to assess their diagnostic significance at generic level and provide additional evidence on species delimitation, as well as correct identification and phylogenetic position. Genera and species of subfamily Alsinoideae exhibit great variation in ultrastructure and a high diversity of novel micromorphological characters were observed. Variation in seed shape, color, hilum, anticlinal wall, epidermal cell, cell surface, margins, and quantitative characters as length and width were studied in detail, compared, illustrated, and their taxonomic significant were discussed. Seed shapes of the species were classified as reniform, round, angular, subcircular, subreniform, and elliptical pyriform, with sub-central, central, basal, and nearly basal hilum. Wavy, irregular, tetragonal, and elongated epidermal cells structure has been observed as an exomorphological character. The present findings show that the micromorphology of subfamily Alsinoideae provides taxonomic information and is helpful to distinguish different species. The results also explained that SEM morphology of seeds provide important data about affinity among taxa and give potential characters in delimitation of members of subfamily Alsinoideae at generic and species level. A principal component analysis allowed to highlight the most outsiders among seed micromorphology with a possible explanation. Taxonomic keys were developed based on micromorphological characters to delimit the species and useful for their quick identification within subfamily Alsinoideae.


Asunto(s)
Caryophyllaceae/anatomía & histología , Caryophyllaceae/clasificación , Semillas/ultraestructura , Microscopía Electrónica de Rastreo , Filogenia , Análisis de Componente Principal , Semillas/anatomía & histología
6.
Microsc Res Tech ; 82(4): 352-360, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30575183

RESUMEN

In this study, comparative morphology, foliar anatomy and palynology of Spergula fallax and Spergula arvensis (Caryophyllaceae) were studied using multiple microscopic techniques. Genus Spergula includes worldwide five species, while in Flora of Pakistan the genus has two species. In this research, the comparative morphological, anatomical, and palynological characters of the two Pakistani Spergula species were studied. We examined some distinguishing morphological features, in both species, such as plant size, habitat, leaf morphological characters, inflorescences, flowers outer whorls, sepals and petals, and flowers number. These characters species were studied analyzing their comparative systematic significant. The foliar anatomical features also provided distinctive characters as the epidermal cell shape, the wall of the epidermal cell, lobes per cell. The differences in quantitative characters were also examined. The palynological characters showed difference in echini arrangement, echini density, and numbers of pore. Quantitative characters were variations in size of polar, equatorial, exine thickness, pore length, and width and P/E ratio. The multiple microscopic techniques provided sufficient evidence about the systematics of the genus Spergula. Based on morphological, anatomical, and palynological characters, analytical keys were developed for the identification and distinction of the species S. fallax and S. arvensis.


Asunto(s)
Caryophyllaceae/anatomía & histología , Flores/anatomía & histología , Epidermis de la Planta/ultraestructura , Hojas de la Planta/anatomía & histología , Polen/ultraestructura , Caryophyllaceae/clasificación , Microscopía Electrónica de Rastreo , Pakistán
7.
Microsc Res Tech ; 81(7): 704-715, 2018 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-29582513

RESUMEN

The Pollen morphology of subfamily Caryophylloideae (Caryophyllaceae) from different phytogeographical region of Pakistan has been evaluated. In this research, 16 species belong to 6 genera of subfamily Caryophylloideae have been studied using light (LM) and scanning electron microscopy (SEM) for both qualitative and quantitative characters. Different palyno-morphological features were observed including; pollen ornamentation, pore ornamentation, echini arrangement, echinidensity, number of pori, size of polar and equatorial diameter, P/E ratio, exine thickness, and size of pore were studied. The palyno-morphological characters of subfamily Caryophylloideae have taxonomically significant in identification and delimitation of species. Two pollen types, i.e., subspheroidal (15 species) and prolate (one species Vaccaria hispanica) were observed. Microechinate-punctate and microechinate-perforate pollen ornamentation were examined. Two pollen types of pori, i.e., prominent (5 species) and sunken (11 species) ornamentation have been reported. Three types of echini arrangement have been reported irregular, regular and rather regular, while three type of echinidensity (i.e., medium, dense and sparse) were observed. Pori numbers were found different in different species range from 5 in Silene apetala to 19-35 in Silene vulgaris. Based on different palyno-morphological characters, taxonomic key was develop for quick and accurate identification. The quantitative data were processed using SPSS software for average, minimum, maximum, and standard error.


Asunto(s)
Caryophyllaceae/clasificación , Polen/ultraestructura , Microscopía Electrónica de Rastreo , Pakistán , Programas Informáticos
8.
PLoS One ; 13(1): e0190536, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29338010

RESUMEN

Gypsophila bermejoi G. López is an allopolyploid species derived from the parental G. struthium L. subsp. struthium and G. tomentosa L. All these plants are gypsophytes endemic to the Iberian Peninsula of particular ecological, evolutionary and biochemical interest. In this study, we present evidence of a possible repression on the process of G. bermejoi speciation by climatic factors. We modelled the ecological niches of the three taxa considered here using a maximum entropy approach and employing a series of bioclimatic variables. Subsequently, we projected these models onto the geographical space of the Iberian Peninsula in the present age and at two past ages: the Last Glacial Maximum and the mid-Holocene period. Furthermore, we compared these niches using the statistical method devised by Warren to calculate their degree of overlap. We also evaluated the evolution of the bioclimatic habitat suitability at those sites were the soil favors the growth of these species. Both the maximum entropy model and the degree of overlap indicated that the ecological behavior of the hybrid differs notably from that of the parental species. During the Last Glacial Maximum, the two parental species appear to take refuge in the western coastal strip of the Peninsula, a region in which there are virtually no sites where G. bermejoi could potentially be found. However, in the mid-Holocene period the suitability of G. bermejoi to sites with favorable soils shifts from almost null to a strong adaptation, a clear change in this tendency. These results suggest that the ecological niches of hybrid allopolyploids can be considerably different to those of their parental species, which may have evolutionary and ecologically relevant consequences. The data obtained indicate that certain bioclimatic variables may possibly repress the processes by which new species are formed. The difference in the ecological niche of G. bermejoi with respect to its parental species prevented it from prospering during the Last Glacial Maximum. However, the climatic change in the mid-Holocene period released this block and as such, it permitted the new species to establish itself. Accordingly, we favor a recent origin of the current populations of G. bermejoi.


Asunto(s)
Caryophyllaceae/clasificación , Clima , Evolución Biológica , Ecosistema , Modelos Biológicos , Suelo , Especificidad de la Especie
9.
Mol Phylogenet Evol ; 112: 23-35, 2017 07.
Artículo en Inglés | MEDLINE | ID: mdl-28433621

RESUMEN

Understanding the relative importance of different mechanisms of speciation in a given lineage requires fully resolved interspecific relationships. Using Facchinia, a genus of seven species centred in the European Alps, we explore whether the polytomy found by Sanger sequencing analyses of standard nuclear (ITS) and plastid markers (trnQ-rps16) is a hard or soft polytomy by substantially increasing the amount of DNA sequence data, generated by genotyping-by-sequencing. In comparison to 142 phylogenetically informative sites in the Sanger sequences the GBS sequences yielded 3363 phylogenetically informative sites after exclusion of apparently oversaturated SNPs. Maximum parsimony, maximum likelihood, NeighborNet, SVDquartets and Astral-II analyses all resulted in phylogenetic trees (and networks) in which interspecific relationships were largely unresolved. After excluding incomplete lineage sorting, hybridisation and oversaturation of characters as possible causes for lack of phylogenetic resolution, we conclude that the polytomy obtained most likely represents a hard polytomy. We hypothesize that diversification of Facchinia is best interpreted as the result of multiple simultaneous vicariance in response to climatic changes during the Early Quaternary.


Asunto(s)
Caryophyllaceae/genética , ADN de Plantas , Especiación Genética , Caryophyllaceae/clasificación , Evolución Molecular , Genotipo , Hibridación Genética , Filogenia , Plastidios/genética , Análisis de Secuencia de ADN
10.
Mol Ecol ; 25(8): 1697-713, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26818626

RESUMEN

Epigenetic modifications are expected to occur at a much faster rate than genetic mutations, potentially causing isolated populations to stochastically drift apart, or if they are subjected to different selective regimes, to directionally diverge. A high level of genome-wide epigenetic divergence between individuals occupying distinct habitats is therefore predicted. Here, we introduce bisulfite-converted restriction site associated DNA sequencing (bsRADseq), an approach to quantify the level of DNA methylation differentiation across multiple individuals. This reduced representation method is flexible in the extent of DNA sequence interrogated. We showcase its applicability in three natural systems, each comprising individuals adapted to divergent environments: a diploid plant (Heliosperma, Caryophyllaceae), a tetraploid plant (Dactylorhiza, Orchidaceae) and an animal (Gasterosteusaculeatus, Gasterosteidae). We present a robust bioinformatic pipeline, combining tools for RAD locus assembly, SNP calling, bisulfite-converted read mapping and DNA methylation calling to analyse bsRADseq data with or without a reference genome. Importantly, our approach accurately distinguishes between SNPs and methylation polymorphism (SMPs). Although DNA methylation frequency between different positions of a genome varies widely, we find a surprisingly high consistency in the methylation profile between individuals thriving in divergent ecological conditions, particularly in Heliosperma. This constitutive stability points to significant molecular or developmental constraints acting on DNA methylation variation. Altogether, by combining the flexibility of RADseq with the accuracy of bisulfite sequencing in quantifying DNA methylation, the bsRADseq methodology and our bioinformatic pipeline open up the opportunity for genome-wide epigenetic investigations of evolutionary and ecological relevance in non-model species, independent of their genomic features.


Asunto(s)
Caryophyllaceae/genética , Metilación de ADN , Epigénesis Genética , Genética de Población , Orchidaceae/genética , Smegmamorpha/genética , Animales , Caryophyllaceae/clasificación , Biología Computacional , Genoma , Orchidaceae/clasificación , Polimorfismo de Nucleótido Simple , Análisis de Secuencia de ADN
11.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(6): 4677-4678, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-26607817

RESUMEN

We determined the complete chloroplast DNA sequence of an extremophile plant, Colobanthus quitensis (Antarctic pearlwort), by de novo assembly based on the sequencing results from Illumina MiSeq platform (Illumina Inc., San Diego, CA). The chloroplast genome of C. quitensis (NCBI accession no. KT737383) is a sequence of 151 276 bp long with a typical quadripartite structure composed of a large single copy region, a small single copy region and a pair of inverted repeats. The overall GC content of C. quitensis genome is 36.7% and it has 66 simple sequence repeats. It contains a total 112 genes including 78 protein coding genes, 30 tRNA genes, and four rRNA genes.


Asunto(s)
Caryophyllaceae/genética , Genes de Plantas , Genoma del Cloroplasto , Composición de Base , Caryophyllaceae/clasificación , Evolución Molecular , Repeticiones de Microsatélite , Filogenia , Análisis de Secuencia de ADN
12.
Int J Phytoremediation ; 18(6): 567-74, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26375321

RESUMEN

The objective of this work is to study the response of Silene vulgaris to a range of environmentally relevant concentrations of Cr(VI) in order to evaluate its potential use in the phytomanagement of Cr polluted sites. Cuttings of six homogenous genotypes from Madrid (Spain) have been used as plant material. The eco-physiological response of S. vulgaris to Cr(VI) changed with the genotype. The yield dose-response curve was characterized by stimulation at low doses of Cr(VI). The effects of metal concentration were quantified on root dry weight, water content and chlorophyll content, determined by SPAD index. The response was not homogeneous for all studied genotypes. At high doses of Cr(VI), plants increased micronutrient concentration in dry tissues which suggested that nutrient balance could be implicated in the alleviation of Cr toxicity. This work highlights the importance of studying the eco-physiological response of metallophytes under a range of pollutant concentrations to determine the most favorable traits to be employed in the phytomanagement process.


Asunto(s)
Caryophyllaceae/metabolismo , Cromo/metabolismo , Contaminantes del Suelo/metabolismo , Biodegradación Ambiental , Caryophyllaceae/química , Caryophyllaceae/clasificación , Caryophyllaceae/genética , Clorofila/análisis , Clorofila/metabolismo , Cromo/análisis , Genotipo , Raíces de Plantas/química , Raíces de Plantas/genética , Raíces de Plantas/metabolismo , Contaminantes del Suelo/análisis
13.
Mol Biol Evol ; 32(8): 2001-14, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-25837578

RESUMEN

Many phylogenomic studies based on transcriptomes have been limited to "single-copy" genes due to methodological challenges in homology and orthology inferences. Only a relatively small number of studies have explored analyses beyond reconstructing species relationships. We sampled 69 transcriptomes in the hyperdiverse plant clade Caryophyllales and 27 outgroups from annotated genomes across eudicots. Using a combined similarity- and phylogenetic tree-based approach, we recovered 10,960 homolog groups, where each was represented by at least eight ingroup taxa. By decomposing these homolog trees, and taking gene duplications into account, we obtained 17,273 ortholog groups, where each was represented by at least ten ingroup taxa. We reconstructed the species phylogeny using a 1,122-gene data set with a gene occupancy of 92.1%. From the homolog trees, we found that both synonymous and nonsynonymous substitution rates in herbaceous lineages are up to three times as fast as in their woody relatives. This is the first time such a pattern has been shown across thousands of nuclear genes with dense taxon sampling. We also pinpointed regions of the Caryophyllales tree that were characterized by relatively high frequencies of gene duplication, including three previously unrecognized whole-genome duplications. By further combining information from homolog tree topology and synonymous distance between paralog pairs, phylogenetic locations for 13 putative genome duplication events were identified. Genes that experienced the greatest gene family expansion were concentrated among those involved in signal transduction and oxidoreduction, including a cytochrome P450 gene that encodes a key enzyme in the betalain synthesis pathway. Our approach demonstrates a new approach for functional phylogenomic analysis in nonmodel species that is based on homolog groups in addition to inferred ortholog groups.


Asunto(s)
Caryophyllaceae/genética , Evolución Molecular , Duplicación de Gen/fisiología , Genoma de Planta/fisiología , Filogenia , Transcriptoma/fisiología , Caryophyllaceae/clasificación , Secuenciación de Nucleótidos de Alto Rendimiento
14.
PLoS One ; 10(2): e0117974, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25710481

RESUMEN

The core Caryophyllales consist of approximately 30 families (12,000 species) distributed worldwide. Many members evolved one-seeded or conjoined fruits, but their origin and structural diversity have not been investigated. A comparative anatomical investigation of the one-seeded fruits within the core Caryophyllales was conducted. The origin of the one-seeded fruits and the evolutionary reconstructions of some carpological characters were traced using a tree based on rbcl and matK data in order to understand the ancestral characters and their changes. The one-seeded fruit type is inferred to be an ancestral character state in core Caryophyllales, with a subsequent increase in the seed number seen in all major clades. Most representatives of the 'Earlier Diverging' clade are distinguished in various carpological traits. The organization of the pericarp is diverse in many groups, although fruits with a dry, many-layered pericarp, consisting of sclerenchyma as outer layers and a thin-walled parenchyma below, with seeds occupying a vertical embryo position, are likely ancestral character states in the core Caryophyllales clade. Several carpological peculiarities in fruit and seed structure were discovered in obligate one-seeded Achatocarpaceae, Chenopodiaceae, Nyctaginaceae, Seguieriaceae and Sarcobataceae. The horizontal embryo evolved in only certain groups of Chenopodiaceae. The bar-thickening of endotegmen cells appears to be an additional character typical of core Caryophyllales. The syncarpy-to-lysicarpy paradigm in Caryophyllaceae needs to be reinterpreted.


Asunto(s)
Caryophyllaceae/genética , Teorema de Bayes , Evolución Biológica , Caryophyllaceae/clasificación , Frutas/genética , Funciones de Verosimilitud , Filogenia , Semillas/anatomía & histología
15.
J Plant Res ; 128(2): 223-38, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25617022

RESUMEN

Petrocoptis is a small genus of chasmophytic plants endemic to the Iberian Peninsula, with some localized populations in the French Pyrenees. Within the genus, a dozen species have been recognized based on morphological diversity, most of them with limited distribution area, in small populations and frequently with potential threats to their survival. To date, however, a molecular evaluation of the current systematic treatments has not been carried out. The aim of the present study is to infer phylogenetic relationships among its subordinate taxa by using plastidial rps16 intron and nuclear internal transcribed spacer (ITS) DNA sequences; and evaluate the phylogenetic placement of the genus Petrocoptis within the family Caryophyllaceae. The monophyly of Petrocoptis is supported by both ITS and rps16 intron sequence analyses. Furthermore, time estimates using BEAST analyses indicate a Middle to Late Miocene diversification (10.59 Myr, 6.44-15.26 Myr highest posterior densities [HPD], for ITS; 14.30 Myr, 8.61-21.00 Myr HPD, for rps16 intron).


Asunto(s)
Caryophyllaceae/clasificación , Caryophyllaceae/genética , Evolución Molecular , Filogenia , Caryophyllaceae/metabolismo , Núcleo Celular/genética , Núcleo Celular/metabolismo , ADN Intergénico/genética , ADN Intergénico/metabolismo , ADN Ribosómico/genética , ADN Ribosómico/metabolismo , Intrones , Datos de Secuencia Molecular , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Plastidios/genética , Plastidios/metabolismo , Análisis de Secuencia de ADN , España
16.
Sensors (Basel) ; 14(12): 22971-81, 2014 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-25479327

RESUMEN

A label-free split G-quadruplex and graphene oxide (GO)-based fluorescence platform has been designed to distinguish Pseudostellaria heterophylla (PH) from its adulterants based on the differences in their nrDNA ITS sequences. Herein, GO has been first introduced to capture G-rich probes with 2:2 split mode and then decrease the background signal. As T-DNA exists, the probes leave the GO surface to form double-stranded structures followed by the formation of the overhanging G-rich sequence into a G-quadruplex structure, which combines quinaldine red specifically to produce a strong fluorescence signal. In addition, this strategy allows detection of T-DNA in a wide range of concentrations from 1.0 × 10(-8) to 2.0 × 10(-6) mol·L(-1) with a detection limit of 7.8 × 10(-9) mol·L(-1). We hope that the split G-quadruplex/GO platform can be utilized to further develop gene identification sensors in Traditional Chinese Medicine or other analysis areas.


Asunto(s)
Caryophyllaceae/clasificación , Caryophyllaceae/genética , ADN de Plantas/genética , Grafito/química , Hibridación Fluorescente in Situ/instrumentación , ADN de Plantas/análisis , Diseño de Equipo , Análisis de Falla de Equipo , G-Cuádruplex , Óxidos/química
17.
Mol Phylogenet Evol ; 78: 365-74, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24857887

RESUMEN

The Balkans are a major European biodiversity hotspot, however, almost nothing is known about processes of intraspecific diversification of the region's high-altitude biota and their reaction to the predicted global warming. To fill this gap, genome size measurements, AFLP fingerprints, plastid and nuclear sequences were employed to explore the phylogeography of Cerastium dinaricum. Range size changes under future climatic conditions were predicted by niche-based modeling. Likely the most cold-adapted plant endemic to the Dinaric Mountains in the western Balkan Peninsula, the species has conservation priority in the European Union as its highly fragmented distribution range includes only few small populations. A deep phylogeographic split paralleled by divergent genome size separates the populations into two vicariant groups. Substructure is pronounced within the southeastern group, corresponding to the area's higher geographic complexity. Cerastium dinaricum likely responded to past climatic oscillations with altitudinal range shifts, which, coupled with high topographic complexity of the region and warmer climate in the Holocene, sculptured its present fragmented distribution. Field observations revealed that the species is rarer than previously assumed and, as shown by modeling, severely endangered by global warming as viable habitat was predicted to be reduced by more than 70% by the year 2080.


Asunto(s)
Caryophyllaceae/clasificación , Altitud , Análisis del Polimorfismo de Longitud de Fragmentos Amplificados , Peninsula Balcánica , Caryophyllaceae/genética , Clima , Ecosistema , Variación Genética , Tamaño del Genoma , Genoma de Planta , Calentamiento Global , Filogenia , Filogeografía
18.
Pak J Biol Sci ; 17(4): 482-9, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25911834

RESUMEN

There are 4 species belong to Ankyropetalum Fenzl (Caryophyllaceae) genus and three of them (A. reuteri Boiss. and Hausskn, A. arsusianum Kotschy ex Boiss. and A. gypsophiloides Fenzl) are distributed in Turkey. There are doubts about taxonomical studies depending on only morphological characteristics. This study has been made to put forth that palinological studies also contribute taxonomical studies. Pollen morphology of the three species belong to Ankyropetalum Fenzl (Caryophyllaceae) genus distributed in Turkey examined with ray microscope and electron microscope in this study. Results evaluated according to Duncan's multiple range test using SPSS statistic program. Pollen's polar and ecvatoral seeming photographs were taken in preparates. Morphology of pollens examined with 50 repetition for each taxon and morphological assessments were made. The common trait of pollens can be summarized as they are circular, oblate and prolate spheroidal, periporate (pore numbers ranged between 20-33), operculum is granulated, annulus is distinct, the form of pollens are tectat. Definition of pollens are given for each taxon, diagnostic specifications recognized as important are used for making diagnosis key. The difference between species are as below: A. arsusianum's pollen shape is oblate-spheroidal, type of pollen is periporate, pore numbers are between 23-33, form of pollen is tectat, ornamentation is perforate. A. reuteri's pollen shape is prolate-spheroidal, type of pollen is periporate, pore numbers are between 20-33, form of pollen is tectat, ornamentation is from perforate to eureticulate A. gypsophiloides pollen shape is oblate-spheroidal, type of pollen is periporate, pore numbers are between 21-30, form of pollen is tectat, ornamentation is perforate.


Asunto(s)
Caryophyllaceae/clasificación , Caryophyllaceae/ultraestructura , Filogenia , Polen/clasificación , Polen/ultraestructura , Microscopía Electrónica de Rastreo , Especificidad de la Especie , Turquía
19.
Zhongguo Zhong Yao Za Zhi ; 39(19): 3689-94, 2014 Oct.
Artículo en Chino | MEDLINE | ID: mdl-25612422

RESUMEN

To establish a convenient and rapid method for identification of Pseudostellariae Radix by molecular identification, the rDNA-ITS sequences of Pseudostella riaheterophylla and its adulterants had been aligned to find out specific fragment. The specific primers against the fragment were designed and the PCR amplification conditions were optimized. The fluorescence reaction of the PCR products colored by 100 x SYBR Green I was observed under UV. The concentration of reaction buffer included 5.5 µL DNA Taq polymerase premix, 10 pmol Tzs-2F and 10 pmol Tzs-2R, 20-80 ng template DNA, and plus double sterile distilled water to 25 µL. The PCR thermal profile was as follows: predenaturation at 95 degrees C for 1 min, followed by 30 cycles of denaturation at 95 degrees C for 5 seconds, primer annealing and extension at 56 degrees C for 15 seconds, then it was extension at 72 degrees C for 30 seconds. The fluorescence reaction of Pseudostellariae Radix showed green fluorescence, while adulterants had not. Extraction, amplification DNA and all steps of molecular identification could be completed successfully in 40 minutes. The approach could amplify DNA template of Pseudostellariae Radix specificity, and its product with 1 µL 100 x SYBR Green I could engender green fluorescence under UV. The method was simple and accurate, so it could be used for identification of Chinese traditional medicine.


Asunto(s)
Caryophyllaceae/genética , Reacción en Cadena de la Polimerasa/métodos , Caryophyllaceae/clasificación , Cartilla de ADN/genética , Contaminación de Medicamentos/prevención & control , Raíces de Plantas/clasificación , Raíces de Plantas/genética
20.
J Evol Biol ; 26(10): 2244-59, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24028472

RESUMEN

Floral nectar composition has been explained as an adaptation to factors that are either directly or indirectly related to pollinator attraction. However, it is often unclear whether the sugar composition is a direct adaptation to pollinator preferences. Firstly, the lower osmolality of sucrose solutions means that they evaporate more rapidly than hexose solutions, which might be one reason why sucrose-rich nectar is typically found in flowers with long tubes (adapted to long-tongued pollinators), where it is better protected from evaporation than in open or short-tubed flowers. Secondly, it can be assumed that temperature-dependent evaporation is generally lower during the night than during the day so that selection pressure to secrete nectar with high osmolality (i.e. hexose-rich solutions) is relaxed for night-active flowers pollinated at night. Thirdly, the breeding system may affect selection pressure on nectar traits; that is, for pollinator-independent, self-pollinated plants, a lower selective pressure on nectar traits can be assumed, leading to a higher variability of nectar sugar composition independent of pollinator preferences, nectar accessibility and nectar protection. To analyse the relations between flower tube length, day vs. night pollination and self-pollination, the nectar sugar composition was investigated in 78 European Caryophylloideae (Caryophyllaceae) with different pollination modes (diurnal, nocturnal, self-pollination) using high-performance liquid chromatography (HPLC). All Caryophylleae species (Dianthus and relatives) were found to have nectar with more than 50% sucrose, whereas the sugar composition of Sileneae species (Silene and relatives) ranged from 0% to 98.2%. In the genus Silene, a clear dichotomous distribution of sucrose- and hexose-dominant nectars is evident. We found a positive correlation between the flower tube length and sucrose content in Caryophylloideae, particularly in day-flowering species, using both conventional analyses and phylogenetically independent contrasts.


Asunto(s)
Caryophyllaceae/metabolismo , Néctar de las Plantas/química , Polinización , Caryophyllaceae/anatomía & histología , Caryophyllaceae/clasificación , Cromatografía Líquida de Alta Presión , Ritmo Circadiano , Flores/anatomía & histología , Flores/metabolismo , Fructosa/química , Fructosa/metabolismo , Glucosa/química , Glucosa/metabolismo , Filogenia , Néctar de las Plantas/metabolismo , Sacarosa/química , Sacarosa/metabolismo
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