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1.
Mar Drugs ; 18(10)2020 Oct 19.
Artículo en Inglés | MEDLINE | ID: mdl-33086600

RESUMEN

Polysaccharides extracted from marine algae have attracted much attention due to their biotechnological applications, including therapeutics, cosmetics, and mainly in agriculture and horticulture as biostimulants, biofertilizers, and stimulators of the natural defenses of plants. This study aimed to evaluate the ability of alginate isolated from Bifurcaria bifurcata from the Moroccan coast and oligoalginates derivatives to stimulate the natural defenses of tomato seedlings. Elicitation was carried out by the internodal injection of bioelicitor solutions. The elicitor capacities were evaluated by monitoring the activity of phenylalanine ammonia-lyase (PAL) as well as polyphenols content in the leaves located above the elicitation site for 5 days. Alginate and oligoalginates treatments triggered plant defense responses, which showed their capacity to significantly induce the PAL activity and phenolic compounds accumulation in the leaves of tomato seedlings. Elicitation by alginates and oligoalginates showed an intensive induction of PAL activity, increasing from 12 h of treatment and remaining at high levels throughout the period of treatment. The amount of polyphenols in the leaves was increased rapidly and strongly from 12 h of elicitation by both saccharide solutions, representing peaks value after 24 h of application. Oligoalginates exhibited an effective elicitor capacity in polyphenols accumulation compared to alginate polymers. The alginate and oligosaccharides derivatives revealed a similar elicitor capacity in PAL activity whereas the accumulation of phenolic compounds showed a differential effect. Polysaccharides extracted from the brown seaweed Bifurcaria bifurcate and oligosaccharides derivatives induced significantly the phenylpropanoid metabolism in tomato seedlings. These results contribute to the valorization of marine biomass as a potential bioresource for plant protection against phytopathogens in the context of eco-sustainable green technology.


Asunto(s)
Alginatos/farmacología , Oligosacáridos/farmacología , Phaeophyceae/química , Sustancias Protectoras/farmacología , Plantones/metabolismo , Solanum lycopersicum/química , Solanum lycopersicum/metabolismo , Alginatos/química , Alginatos/aislamiento & purificación , Marruecos , Oligosacáridos/química , Oligosacáridos/aislamiento & purificación , Fenilanina Amoníaco-Liasa/análisis , Fenilanina Amoníaco-Liasa/efectos de los fármacos , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Hojas de la Planta/química , Polifenoles/análisis , Polifenoles/aislamiento & purificación , Polifenoles/metabolismo , Sustancias Protectoras/química , Sustancias Protectoras/aislamiento & purificación , Metabolismo Secundario , Plantones/química
2.
J Microbiol Biotechnol ; 30(4): 622-632, 2020 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-31581382

RESUMEN

Phenylalanine ammonia-lyase (PAL) catalyzes the reversible deamination of phenylalanine to cinnamic acid and ammonia. Algae have been considered as biofactories for PAL production, however, biochemical characterization of PAL and its potency for myristicin biotransformation into MMDA (3-methoxy-4, 5-methylenedioxyamphetamine) has not been studied yet. Thus, PAL from Anabaena flos-aquae and Spirulina platensis has been purified, comparatively characterized and its affinity to transform myristicin was assessed. The specific activity of purified PAL from S. platensis (73.9 µmol/mg/min) and A. flos-aquae (30.5 µmol/mg/min) was increased by about 2.9 and 2.4 folds by gel-filtration comparing to their corresponding crude enzymes. Under denaturing-PAGE, a single proteineous band with a molecular mass of 64 kDa appeared for A. flos-aquae and S. platensis PAL. The biochemical properties of the purified PAL from both algal isolates were determined comparatively. The optimum temperature of S. platensis and A. flos-aquae PAL for forward or reverse activity was reported at 30°C, while the optimum pH for PAL enzyme isolated from A. flos-aquae was 8.9 for forward and reverse activities, and S. platensis PAL had maximum activities at pH 8.9 and 8 for forward and reverse reactions, respectively. Luckily, the purified PALs have the affinity to hydroaminate the myristicin to MMDA successfully in one step. Furthermore, a successful method for synthesis of MMDA from myristicin in two steps was also established. Gas chromatography-mass spectrometry (GC-MS) analysis was conducted to track the product formation.


Asunto(s)
Compuestos de Bencilo/metabolismo , Dioxolanos/metabolismo , Dolichospermum flos-aquae/enzimología , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo , Pirogalol/análogos & derivados , 3,4-Metilenodioxianfetamina/análogos & derivados , 3,4-Metilenodioxianfetamina/metabolismo , Derivados de Alilbenceno , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Biotransformación , Concentración de Iones de Hidrógeno , Estructura Molecular , Peso Molecular , Fenilanina Amoníaco-Liasa/química , Pirogalol/metabolismo , Spirulina/enzimología , Especificidad por Sustrato , Temperatura
3.
Molecules ; 24(22)2019 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-31731791

RESUMEN

This article overviews the numerous immobilization methods available for various biocatalysts such as whole-cells, cell fragments, lysates or enzymes which do not require preliminary enzyme purification and introduces an advanced approach avoiding the costly and time consuming downstream processes required by immobilization of purified enzyme-based biocatalysts (such as enzyme purification by chromatographic methods and dialysis). Our approach is based on silica shell coated magnetic nanoparticles as solid carriers decorated with mixed functions having either coordinative binding ability (a metal ion complexed by a chelator anchored to the surface) or covalent bond-forming ability (an epoxide attached to the surface via a proper linker) enabling a single operation enrichment and immobilization of a recombinant phenylalanine ammonia-lyase from parsley fused to a polyhistidine affinity tag.


Asunto(s)
Enzimas Inmovilizadas , Petroselinum/enzimología , Fenilanina Amoníaco-Liasa , Proteínas de Plantas , Enzimas Inmovilizadas/química , Enzimas Inmovilizadas/aislamiento & purificación , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Proteínas de Plantas/química , Proteínas de Plantas/aislamiento & purificación , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación
4.
PLoS One ; 12(3): e0173269, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28282402

RESUMEN

Phenylketonuria (PKU) is a genetic metabolic disease in which the decrease or loss of phenylalanine hydroxylase (PAH) activity results in elevated, neurotoxic levels of phenylalanine (Phe). Due to many obstacles, PAH enzyme replacement therapy is not currently an option. Treatment of PKU with an alternative enzyme, phenylalanine ammonia lyase (PAL), was first proposed in the 1970s. However, issues regarding immunogenicity, enzyme production and mode of delivery needed to be overcome. Through the evaluation of PAL enzymes from multiple species, three potential PAL enzymes from yeast and cyanobacteria were chosen for evaluation of their therapeutic potential. The addition of polyethylene glycol (PEG, MW = 20,000), at a particular ratio to modify the protein surface, attenuated immunogenicity in an animal model of PKU. All three PEGylated PAL candidates showed efficacy in a mouse model of PKU (BTBR Pahenu2) upon subcutaneous injection. However, only PEGylated Anabaena variabilis (Av) PAL-treated mice demonstrated sustained low Phe levels with weekly injection and was the only PAL evaluated that maintained full enzymatic activity upon PEGylation. A PEGylated recombinant double mutant version of AvPAL (Cys503Ser/Cys565Ser), rAvPAL-PEG, was selected for drug development based on its positive pharmacodynamic profile and favorable expression titers. PEGylation was shown to be critical for rAvPAL-PEG efficacy as under PEGylated rAvPAL had a lower pharmacodynamic effect. rAvPAL and rAvPAL-PEG had poor stability at 4°C. L-Phe and trans-cinnamate were identified as activity stabilizing excipients. rAvPAL-PEG is currently in Phase 3 clinical trials to assess efficacy in PKU patients.


Asunto(s)
Fenilanina Amoníaco-Liasa/uso terapéutico , Fenilcetonurias/tratamiento farmacológico , Polietilenglicoles/química , Anabaena/enzimología , Animales , Anticuerpos/sangre , Modelos Animales de Enfermedad , Composición de Medicamentos , Terapia de Reemplazo Enzimático , Ensayo de Inmunoadsorción Enzimática , Ratones , Nostoc/enzimología , Petroselinum/enzimología , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/inmunología , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilcetonurias/patología , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/uso terapéutico
5.
Molecules ; 20(9): 16833-51, 2015 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-26389875

RESUMEN

Phenylalanine ammonia-lyase (PAL) is the first enzyme involved in the phenylpropanoid pathway and plays important roles in the secondary metabolisms, development and defense of plants. To study the molecular function of PAL in anthocyanin synthesis of Coleus (Solenostemon scutellarioides (L.) Codd), a Coleus PAL gene designated as SsPAL1 was cloned and characterized using a degenerate oligonucleotide primer PCR and RACE method. The full-length SsPAL1 was 2450 bp in size and consisted of one intron and two exons encoding a polypeptide of 711 amino acids. The deduced SsPAL1 protein showed high identities and structural similarities with other functional plant PAL proteins. A series of putative cis-acting elements involved in transcriptional regulation, light and stress responsiveness were found in the upstream regulatory sequence of SsPAL1. Transcription pattern analysis indicated that SsPAL1 was constitutively expressed in all tissues examined and was enhanced by light and different abiotic factors. The recombinant SsPAL1 protein exhibited high PAL activity, at optimal conditions of 60 °C and pH 8.2. Although the levels of total PAL activity and total anthocyanin concentration have a similar variation trend in different Coleus cultivars, there was no significant correlation between them (r = 0.7529, p > 0.1), suggesting that PAL was not the rate-limiting enzyme for the downstream anthocyanin biosynthetic branch in Coleus. This study enables us to further understand the role of SsPAL1 in the phenylpropanoid (flavonoids, anthocyanins) biosynthesis in Coleus at the molecular level.


Asunto(s)
Coleus/enzimología , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo , Proteínas de Plantas/metabolismo , Proteínas Recombinantes/metabolismo , Secuencia de Aminoácidos , Secuencia de Bases , Clonación Molecular , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Modelos Moleculares , Datos de Secuencia Molecular , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/genética , Filogenia , Proteínas de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/aislamiento & purificación , Reacción en Cadena de la Polimerasa , Conformación Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Homología de Secuencia de Aminoácido
6.
Appl Biochem Biotechnol ; 176(3): 924-37, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25947617

RESUMEN

Phenylalanine ammonia-lyase (PAL) is one of the most extensively studied enzymes with its crucial role in secondary phenylpropanoid metabolism of plants. Recently, its demand has been increased for aromatic chemical production, but its applications in trans-cinnamic acid production were not much explored. In the present study, a putative PAL gene from Zea mays designated as ZmPAL2 was expressed and characterized in Escherichia coli BL21 (DE3). The recombinant ZmPAL2 exhibited a high PAL activity (7.14 U/mg) and a weak tyrosine ammonia-lyase activity. The optimal temperature of ZmPAL2 was 55 °C, and the thermal stability results showed that about 50 % of enzyme activity remained after a treatment at 60 °C for 6 h. The recombinant ZmPAL2 is a good candidate for the production of trans-cinnamic acid. The vitro conversion indicated that the recombinant ZmPAL2 could effectively catalyze the L-phenylalanine to trans-cinnamic acid, and the trans-cinnamic acid concentration can reach up to 5 g/l.


Asunto(s)
Cinamatos/metabolismo , Fenilanina Amoníaco-Liasa/metabolismo , Fenilalanina/metabolismo , Proteínas Recombinantes/metabolismo , Zea mays/enzimología , Zea mays/genética , Secuencia de Aminoácidos , Biocatálisis , Escherichia coli/genética , Datos de Secuencia Molecular , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/genética , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Análisis de Secuencia
7.
Appl Biochem Biotechnol ; 176(4): 999-1011, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25906687

RESUMEN

Phenylalanine ammonia lyase (PAL) from Rhodotorula glutinis was encapsulated within polyethyleneimine-mediated biomimetic silica. The main factors in the preparation of biomimetic silica were optimized by response surface methodology (RSM). Compared to free PAL (about 2 U), the encapsulated PAL retained more than 43 % of their initial activity after 1 h of incubation time at 60 °C, whereas free PAL lost most of activity in the same conditions. It was clearly indicated that the thermal stability of PAL was improved by encapsulation. Moreover, the encapsulated PAL exhibited the excellent stability of the enzyme against denaturants and storage stability, and pH stability was improved by encapsulation. Operational stability of 7 reaction cycles showed that the encapsulated PAL was stable. Nevertheless, the K m value of encapsulated PAL in biomimetic silica was higher than that of the free PAL due to lower total surface area and increased mass transfer resistance.


Asunto(s)
Proteínas Bacterianas/química , Materiales Biomiméticos/química , Fenilanina Amoníaco-Liasa/química , Polietileneimina/química , Rhodotorula/enzimología , Dióxido de Silicio/química , Proteínas Bacterianas/aislamiento & purificación , Medios de Cultivo/química , Composición de Medicamentos/métodos , Pruebas de Enzimas , Estabilidad de Enzimas , Equipo Reutilizado , Análisis Factorial , Calor , Concentración de Iones de Hidrógeno , Cinética , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Rhodotorula/química , Rhodotorula/crecimiento & desarrollo
8.
PLoS One ; 9(9): e108586, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25268937

RESUMEN

An efficient enzymatic process was developed to produce optically pure D-phenylalanine through asymmetric resolution of the racemic DL-phenylalanine using immobilized phenylalanine ammonia-lyase (RgPAL) from Rhodotorula glutinis JN-1. RgPAL was immobilized on a modified mesoporous silica support (MCM-41-NH-GA). The resulting MCM-41-NH-GA-RgPAL showed high activity and stability. The resolution efficiency using MCM-41-NH-GA-RgPAL in a recirculating packed-bed reactor (RPBR) was higher than that in a stirred-tank reactor. Under optimal operational conditions, the volumetric conversion rate of L-phenylalanine and the productivity of D-phenylalanine reached 96.7 mM h⁻¹ and 0.32 g L⁻¹ h⁻¹, respectively. The optical purity (eeD) of D-phenylalanine exceeded 99%. The RPBR ran continuously for 16 batches, the conversion ratio did not decrease. The reactor was scaled up 25-fold, and the productivity of D-phenylalanine (eeD>99%) in the scaled-up reactor reached 7.2 g L⁻¹ h⁻¹. These results suggest that the resolution process is an alternative method to produce highly pure D-phenylalanine.


Asunto(s)
Enzimas Inmovilizadas/química , Proteínas Fúngicas/química , Fenilanina Amoníaco-Liasa/química , Fenilalanina/química , Rhodotorula/química , Adsorción , Biocatálisis , Fraccionamiento Químico/métodos , Enzimas Inmovilizadas/aislamiento & purificación , Proteínas Fúngicas/aislamiento & purificación , Cinética , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Rhodotorula/enzimología , Dióxido de Silicio , Estereoisomerismo
9.
BMC Evol Biol ; 14: 100, 2014 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-24884360

RESUMEN

BACKGROUND: Phenylalanine ammonia-lyase (PAL; E.C.4.3.1.5) is a key enzyme of the phenylpropanoid pathway in plant development, and it catalyses the deamination of phenylalanine to trans-cinnamic acid, leading to the production of secondary metabolites. This enzyme has been identified in many organisms, ranging from prokaryotes to higher plants. Because Nelumbo nucifera is a basal dicot rich in many secondary metabolites, it is a suitable candidate for research on the phenylpropanoid pathway. RESULTS: Three PAL members, NnPAL1, NnPAL2 and NnPAL3, have been identified in N. nucifera using genome-wide analysis. NnPAL1 contains two introns; however, both NnPAL2 and NnPAL3 have only one intron. Molecular and evolutionary analysis of NnPAL1 confirms that it is an ancient PAL member of the angiosperms and may have a different origin. However, PAL clusters, except NnPAL1, are monophyletic after the split between dicots and monocots. These observations suggest that duplication events remain an important occurrence in the evolution of the PAL gene family. Molecular assays demonstrate that the mRNA of the NnPAL1 gene is 2343 bp in size and encodes a 717 amino acid polypeptide. The optimal pH and temperature of the recombinant NnPAL1 protein are 9.0 and 55°C, respectively. The NnPAL1 protein retains both PAL and weak TAL catalytic activities with Km values of 1.07 mM for L-phenylalanine and 3.43 mM for L-tyrosine, respectively. Cis-elements response to environmental stress are identified and confirmed using real-time PCR for treatments with abscisic acid (ABA), indoleacetic acid (IAA), ultraviolet light, Neurospora crassa (fungi) and drought. CONCLUSIONS: We conclude that the angiosperm PAL genes are not derived from a single gene in an ancestral angiosperm genome; therefore, there may be another ancestral duplication and vertical inheritance from the gymnosperms. The different evolutionary histories for PAL genes in angiosperms suggest different mechanisms of functional regulation. The expression patterns of NnPAL1 in response to stress may be necessary for the survival of N. nucifera since the Cretaceous Period. The discovery and characterisation of the ancient NnPAL1 help to elucidate PAL evolution in angiosperms.


Asunto(s)
Evolución Molecular , Nelumbo/genética , Fenilanina Amoníaco-Liasa/genética , Magnoliopsida/genética , Nelumbo/enzimología , Nelumbo/fisiología , Fenilalanina/metabolismo , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Filogenia , Conformación Proteica , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Estrés Fisiológico
10.
Crit Rev Biotechnol ; 34(3): 258-68, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23688066

RESUMEN

Phenylalanine ammonia lyase (PAL) catalyzes the nonoxidative deamination of l-phenylalanine to form trans-cinnamic acid and a free ammonium ion. It plays a major role in the catabolism of l-phenylalanine. The presence of PAL has been reported in diverse plants, some fungi, Streptomyces and few Cyanobacteria. In the past two decades, PAL has gained considerable significance in several clinical, industrial and biotechnological applications. Since its discovery, much knowledge has been gathered with reference to the enzyme's importance in phenyl propanoid pathway of plants. In contrast, there is little knowledge about microbial PAL. Furthermore, the commercial source of the enzyme has been mainly obtained from the fungi. This study focuses on the recent advances on the physiological role of microbial PAL and the improvements of PAL biotechnological production both from our laboratory and many others as well as the latest advances on the new applications of microbial PAL.


Asunto(s)
Fenilanina Amoníaco-Liasa , Bacterias/metabolismo , Hongos/metabolismo , Microbiología Industrial/métodos , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo
11.
Yao Xue Xue Bao ; 48(9): 1498-502, 2013 Sep.
Artículo en Chino | MEDLINE | ID: mdl-24358787

RESUMEN

The expression of phenylalnine ammonia lyase (LJPAL1) is closely related to the content of active compounds in Lonicera japonica. In this paper, a prokaryotic expression vector is constructed and LJPAL1 protein is expressed in E. coli. Three antigen sites were synthesized to peptide antigen and prepared polyclonal antibody of Anti-LJT-1, Anti-LJT-2 and Anti-LJT-3, separately. Antibody Anti-LJT-2 was screened using Western blotting. And indirect ELISA was built using Anti-LJT-2. The results of this study will be a base for honeysuckle chemical quality and evaluation kits.


Asunto(s)
Anticuerpos/inmunología , Lonicera/química , Fenilanina Amoníaco-Liasa/inmunología , Anticuerpos/metabolismo , Especificidad de Anticuerpos , Western Blotting , Ensayo de Inmunoadsorción Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Flores/química , Regulación de la Expresión Génica de las Plantas , Vectores Genéticos , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Plantas Medicinales/química , Plásmidos , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína
12.
Plant Physiol ; 162(1): 52-62, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23547102

RESUMEN

White campion (Silene latifolia) is a dioecious plant that emits 1,2-dimethoxybenzene (veratrole), a potent pollinator attractant to the nocturnal moth Hadena bicruris. Little is known about veratrole biosynthesis, although methylation of 2-methoxyphenol (guaiacol), another volatile emitted from white campion flowers, has been proposed. Here, we explore the biosynthetic route to veratrole. Feeding white campion flowers with [(13)C9]l-phenylalanine increased guaiacol and veratrole emission, and a significant portion of these volatile molecules contained the stable isotope. When white campion flowers were treated with the phenylalanine ammonia lyase inhibitor 2-aminoindan-2-phosphonic acid, guaiacol and veratrole levels were reduced by 50% and 63%, respectively. Feeding with benzoic acid (BA) or salicylic acid (SA) increased veratrole emission 2-fold, while [(2)H5]BA and [(2)H6]SA feeding indicated that the benzene ring of both guaiacol and veratrole is derived from BA via SA. We further report guaiacol O-methyltransferase (GOMT) activity in the flowers of white campion. The enzyme was purified to apparent homogeneity, and the peptide sequence matched that encoded by a recently identified complementary DNA (SlGOMT1) from a white campion flower expressed sequence tag database. Screening of a small population of North American white campion plants for floral volatile emission revealed that not all plants emitted veratrole or possessed GOMT activity, and SlGOMT1 expression was only observed in veratrole emitters. Collectively these data suggest that veratrole is derived by the methylation of guaiacol, which itself originates from phenylalanine via BA and SA, and therefore implies a novel branch point of the general phenylpropanoid pathway.


Asunto(s)
Anisoles/metabolismo , Flores/enzimología , Aceites de Plantas/metabolismo , Proteínas de Plantas/metabolismo , Silene/enzimología , Secuencia de Aminoácidos , Animales , Anisoles/química , Ácido Benzoico/farmacología , Vías Biosintéticas , Isótopos de Carbono/análisis , ADN Complementario/genética , Flores/química , Flores/efectos de los fármacos , Flores/genética , Guayacol/química , Guayacol/metabolismo , Indanos/farmacología , Metilación , Aceites Volátiles/metabolismo , Organofosfonatos/farmacología , Fenilalanina/metabolismo , Fenilanina Amoníaco-Liasa/antagonistas & inhibidores , Fenilanina Amoníaco-Liasa/genética , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo , Proteínas de Plantas/antagonistas & inhibidores , Proteínas de Plantas/genética , Proteínas de Plantas/aislamiento & purificación , Polinización , Ácido Salicílico/farmacología , Análisis de Secuencia de Proteína , Silene/química , Silene/efectos de los fármacos , Silene/genética
13.
Biomed Khim ; 59(6): 682-92, 2013.
Artículo en Ruso | MEDLINE | ID: mdl-24511680

RESUMEN

The influence of freezing-thawing on the activity of recombinant L-phenylalanine-ammonia-lyase has been investigated. Conditions of liophilization of recombinant L-phenylalanine-ammonia-lyase at which enzyme loses about 10% of activity in a single freeze-thaw cycle are chosen. Dependence of cryoscopic temperature of enzyme from concentration of protein in a preparation is studied. The optimum temperature of freezing of enzymatic preparation L-phenylalanine-ammonia-lyase for sublimatic drying is chosen.


Asunto(s)
Fenilanina Amoníaco-Liasa , Ingeniería de Proteínas/métodos , Basidiomycota/genética , Estabilidad de Enzimas , Escherichia coli/genética , Liofilización , Genes Fúngicos , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/genética , Fenilanina Amoníaco-Liasa/aislamiento & purificación
14.
Genet Mol Res ; 10(4): 3385-402, 2011 Nov 22.
Artículo en Inglés | MEDLINE | ID: mdl-22179997

RESUMEN

Anthocyanidin is a group of flavonoid compounds used as a vegetable pigment and plays an important role in flower coloration and environmental adaptations of the Chinese ornamental plant Scutellaria viscidula. We determined the cDNA sequences of phenylalanine ammonia-lyase (SvPAL), flavanone 3-hydroxylase (SvF3H) and dihydroflavonol 4-reductase (SvDFR) genes in S. viscidula. Comparative analysis showed that the protein products of these three genes did not have a transit peptide at their N-terminal portion, which indicated that these enzymes were directly involved in the substrate conversion in the cytoplasmic matrix. Bioinformatic analysis further revealed that Svpal, Svf3h and Svdfr were the members of flavonoid biosynthetic genes with highly conserved motifs. Based on phylogenetic tree analysis, it appears that PAL, F3H or DFR from different plants might have originated from the same ancestor. This study can help to map and regulate the important stages involved in anthocyanidin biosynthesis by genetic engineering to diversify flower color and improve the ornamental value of S. viscidula.


Asunto(s)
Oxidorreductasas de Alcohol/genética , Antocianinas/genética , Genes de Plantas/genética , Oxigenasas de Función Mixta/genética , Fenilanina Amoníaco-Liasa/genética , Scutellaria/genética , Oxidorreductasas de Alcohol/química , Oxidorreductasas de Alcohol/aislamiento & purificación , Secuencia de Aminoácidos , Antocianinas/biosíntesis , Secuencia de Bases , Vías Biosintéticas/genética , Clonación Molecular , Secuencia Conservada/genética , ADN Complementario/genética , Evolución Molecular , Oxigenasas de Función Mixta/química , Oxigenasas de Función Mixta/aislamiento & purificación , Modelos Moleculares , Datos de Secuencia Molecular , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Filogenia , Proteínas de Plantas/química , Proteínas de Plantas/genética , Estructura Terciaria de Proteína , Scutellaria/enzimología , Alineación de Secuencia
15.
Biochem J ; 424(2): 233-42, 2009 Nov 11.
Artículo en Inglés | MEDLINE | ID: mdl-19725811

RESUMEN

PAL (L-phenylalanine ammonia-lyase), the first enzyme of phenylpropanoid biosynthesis, is often encoded by multigene families in plants. A PCR-based approach was used to isolate cDNA clones corresponding to the four PAL genes of tobacco (Nicotiana tabacum). By careful comparison of cDNA and genomic clones, a new PAL gene (PAL4) was defined. PCR amplification of PAL sequences from cDNA led to the generation of chimaeric clones between PAL1 and PAL4, and incorrect annotation of PAL4 ESTs (expressed sequence tags) as PAL1 in the EST database has given rise to a randomly shuffled tentative consensus sequence. The PAL2 previously described in the literature was shown, by domain swapping experiments with PAL1, to possess a single nucleotide substitution leading to an inactive enzyme. The altered amino acid resulting from this substitution maps to the base of the active site pocket in the three-dimensional structure of PAL. The inactive PAL2 allele could not be recovered from 13 different tobacco cultivars examined. PALs 1-4 were co-expressed in multiple plant organs, and were also co-induced following exposure of cell cultures to yeast elicitor or methyl jasmonate. All four tobacco PAL proteins expressed in Escherichia coli displayed normal Michaelis-Menten kinetics, with Km values between 36 and 60 muM. Co-expression of different PAL proteins in E. coli resulted in formation of heterotetramers, which possessed kinetic properties within the same range as those of the individual homotetramers. The potential physiological function of heterotetrameric PAL forms is discussed.


Asunto(s)
Nicotiana/enzimología , Fenilanina Amoníaco-Liasa/genética , Multimerización de Proteína , Regulación Enzimológica de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Isoenzimas/genética , Isoenzimas/aislamiento & purificación , Isoenzimas/metabolismo , Cinética , Datos de Secuencia Molecular , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo , Transcripción Genética
16.
Z Naturforsch C J Biosci ; 61(7-8): 578-82, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-16989320

RESUMEN

Glyphosate showed a remarkable effect inducing the change of flower symmetry from the actinomorphic to the zygomorphic type in Petunia hybrida. Glyphosate [N-(phosphonomethyl)glycine] reduced the anthocyanin content and showed a weak inhibitory effect against phenylalanine ammonia-lyase (PAL) activity. L-2-Aminooxy-3-phenylpropionic acid (APA), an inhibitor of PAL activity, reduced the anthocyanin content but had no effect on flower shape. Additional phenylalanine or trans-cinnamic acid, the intermediates of glyphosate inhibition against PAL activity, could not recover the change of flower shape induced by glyphosate. These results suggested that the reduction of PAL activity alone could not account for the two characteristic changes of flower symmetry and pigmentation induced by glyphosate. On the other hand, the results of application of glyphosate-related compounds suggested that the structure of glyphosate contributed to induce the morphological change of Petunia flower. Glyphosate may thus be a very useful agent in the elucidation of unresolved questions of flower morphogenesis and the related metabolism.


Asunto(s)
Flores/crecimiento & desarrollo , Glicina/análogos & derivados , Morfogénesis/efectos de los fármacos , Petunia/fisiología , Pigmentación/efectos de los fármacos , Flores/efectos de los fármacos , Glicina/farmacología , Herbicidas/farmacología , Petunia/efectos de los fármacos , Petunia/crecimiento & desarrollo , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo , Semillas , Glifosato
17.
Chemistry ; 12(10): 2739-44, 2006 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-16419141

RESUMEN

Acrylic acids and alanines substituted with heteroaryl groups at the beta-position were synthesized and spectroscopically characterized (UV, HRMS, (1)H NMR, and (13)C NMR spectroscopy). The heteroaryl groups were furanyl, thiophenyl, benzofuranyl, and benzothiophenyl and contained the alanyl side chains either at the 2- or 3-positions. While the former are good substrates for phenylalanine ammonia-lyase (PAL), the latter compounds are inhibitors. Exceptions are thiophen-3-yl-alanine, a moderate substrate and furan-3-yl-alanine, which is inert. Possible reasons for these exceptions are discussed. Starting from racemic heteroaryl-2-alanines their D-enantiomers were prepared by using a stereodestructive procedure. From the heteroaryl-2-acrylates, the L-enantiomers of the heteroaryl-2-alanines were prepared at high ammonia concentration. These results can be best explained by a Friedel-Crafts-type electrophilic attack at the aromatic part of the substrates as the initial step of the PAL reaction.


Asunto(s)
Alanina/metabolismo , Petroselinum/enzimología , Fenilanina Amoníaco-Liasa/metabolismo , Acrilatos/química , Acrilatos/metabolismo , Alanina/análogos & derivados , Benzofuranos/química , Benzofuranos/metabolismo , Catálisis , Interacciones Farmacológicas , Furanos/química , Furanos/metabolismo , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Análisis Espectral , Especificidad por Sustrato , Tiofenos/química , Tiofenos/metabolismo
18.
Arch Biochem Biophys ; 438(1): 1-10, 2005 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-15878763

RESUMEN

The conversion of alpha-phenylalanine to beta-phenylalanine is the first committed step in the biosynthesis of the C-13 side chain of Taxol. Thus, the novel enzyme responsible for this step, phenylalanine aminomutase (PAM), is of considerable interest for studies of Taxol biosynthesis and represents a potential target for genetic engineering. A method is described for purifying PAM from Taxus chinensis cell cultures. The purified enzyme has a K(m) of 1.1mM, a V(max) of 110.1 microm/min/mg protein, a pH optimum of 7.5-8.0, and a denatured molecular weight of about 80 kDa. Peptide sequences derived from the purified protein were used to design and synthesize degenerate primers enabling the PCR synthesis of the PAM cDNA. The PAM cDNA encodes a protein of 687 amino acid residues with a deduced molecular weight of 75.3 kDa. The PAM cDNA was cloned and expressed in Escherichia coli, and PAM activity was demonstrated. As a gene symbol for the PAM enzyme, pam is proposed. Protein sequence alignments of PAM, phenylalanine ammonia-lyase (PAL), and histidine ammonia-lyase (HAL) sequences exhibit significant similarity providing insight into potential active site residues of PAM.


Asunto(s)
Paclitaxel/biosíntesis , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/metabolismo , Ingeniería de Proteínas/métodos , Taxus/enzimología , Taxus/genética , Secuencia de Aminoácidos , Clonación Molecular/métodos , Activación Enzimática , Estabilidad de Enzimas , Escherichia coli/enzimología , Escherichia coli/genética , Datos de Secuencia Molecular , Fenilanina Amoníaco-Liasa/genética , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido
19.
Proteomics ; 5(2): 450-60, 2005 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-15627959

RESUMEN

In classical proteomic studies, the searches in protein databases lead mostly to the identification of protein functions by homology due to the non-exhaustiveness of the protein databases. The quality of the identification depends on the studied organism, its complexity and its representation in the protein databases. Nevertheless, this basic function identification is insufficient for certain applications namely for the development of RNA-based gene-silencing strategies, commonly termed RNA interference (RNAi) in animals and post-transcriptional gene silencing (PTGS) in plants, that require an unambiguous identification of the targeted gene sequence. A PTGS strategy was considered in the study of the infection of Oryza sativa by the Rice Yellow Mottle Virus (RYMV). It is suspected that the RYMV recruits host proteins after its entry into plant cells to form a complex facilitating virus multiplication and spreading. The protein partners of this complex were identified by a classical proteomic approach, nano liquid chromatography tandem mass spectrometry. Among the identified proteins, several were retained for a PTGS strategy. Nevertheless most of the protein candidates appear to be members of multigenic families for which all paralog genes are not present in protein databases. Thus the identification of the real expressed paralog gene with classical protein database searches is impossible. Consequently, as the genome contains all genes and thus all paralog genes, a whole genome search strategy was developed to determine the specific expressed paralog gene. With this approach, the identification of peptides matching only a single gene, called discriminant peptides, allows definitive proof of the expression of this identified gene. This strategy has several requirements: (i) a genome completely sequenced and accessible; (ii) high protein sequence coverage. In the present work, through three examples, we report and validate for the first time a genome database search strategy to specifically identify paralog genes belonging to multigenic families expressed under specific conditions.


Asunto(s)
Familia de Multigenes , Oryza/genética , Proteínas de Plantas/química , Proteínas de Plantas/genética , Virus de Plantas/genética , Proteómica , Chaperonina 60/química , Chaperonina 60/genética , Chaperonina 60/aislamiento & purificación , Chaperonina 60/metabolismo , Cromatografía en Gel , Cromatografía Liquida , Cromosomas de las Plantas , Bases de Datos Genéticas , Bases de Datos de Proteínas , Análisis Discriminante , Electroforesis en Gel de Poliacrilamida , Liofilización , Fructosa-Bifosfato Aldolasa/química , Fructosa-Bifosfato Aldolasa/genética , Fructosa-Bifosfato Aldolasa/aislamiento & purificación , Fructosa-Bifosfato Aldolasa/metabolismo , Expresión Génica , Silenciador del Gen , Genes de Plantas , Espectrometría de Masas , Proteínas Mitocondriales/química , Proteínas Mitocondriales/genética , Proteínas Mitocondriales/aislamiento & purificación , Proteínas Mitocondriales/metabolismo , Nanotecnología , Oryza/química , Fenilanina Amoníaco-Liasa/química , Fenilanina Amoníaco-Liasa/genética , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Fenilanina Amoníaco-Liasa/metabolismo , Proteínas de Plantas/aislamiento & purificación , Proteínas de Plantas/metabolismo , Virus de Plantas/química , Virus de Plantas/aislamiento & purificación , Procesamiento Proteico-Postraduccional , Interferencia de ARN , Reproducibilidad de los Resultados , Análisis de Secuencia de Proteína
20.
J Plant Physiol ; 160(8): 859-63, 2003 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-12964861

RESUMEN

Phenylalanine ammonia-lyase (PAL, EC 4.3.1.5) and tyrosine ammonia-lyase (TAL, 4.3.1.), the key enzymes of the phenylpropanoid pathway, are inducible in response to biotic (such as chitin from fungal cell walls) and abiotic cues. Application of chitin and chitosan to soybean leaf tissues caused increased activity of PAL and TAL enzymes. The elevation of enzyme activity was dependent on the chain length of the oligomers and time after treatment. The hexamer of chitin and pentamer of chitosan produced the maximum activities at 36 h after treatment as compared to controls. Total phenolic content of soybean leaves increased following chitosan and chitin oligomer treatments, showing a positive correlation between enzyme activity and total phenolic content.


Asunto(s)
Amoníaco-Liasas/metabolismo , Quitina/análogos & derivados , Quitina/metabolismo , Glycine max/metabolismo , Oligosacáridos/metabolismo , Fenilanina Amoníaco-Liasa/metabolismo , Amoníaco-Liasas/aislamiento & purificación , Secuencia de Carbohidratos , Quitosano , Cinética , Datos de Secuencia Molecular , Oligosacáridos/química , Oligosacáridos/farmacología , Fenilanina Amoníaco-Liasa/aislamiento & purificación , Hojas de la Planta/enzimología , Hojas de la Planta/metabolismo , Proteínas de Plantas/metabolismo , Glycine max/enzimología
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