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1.
Plant J ; 111(3): 819-835, 2022 08.
Artículo en Inglés | MEDLINE | ID: mdl-35665549

RESUMEN

For starch metabolism to take place correctly, various enzymes and proteins acting on the starch granule surface are crucial. Recently, two non-catalytic starch-binding proteins, pivotal for normal starch turnover in Arabidopsis leaves, namely, EARLY STARVATION 1 (ESV1) and its homolog LIKE EARLY STARVATION 1 (LESV), have been identified. Both share nearly 38% sequence homology. As ESV1 has been found to influence glucan phosphorylation via two starch-related dikinases, α-glucan, water dikinase (GWD) and phosphoglucan, water dikinase (PWD), through modulating the surface glucan structures of the starch granules and thus affecting starch degradation, we assess the impact of its homolog LESV on starch metabolism. Thus, the 65-kDa recombinant protein LESV and the 50-kDa ESV1 were analyzed regarding their influence on the action of GWD and PWD on the surface of the starch granules. We included starches from various sources and additionally assessed the effect of these non-enzymatic proteins on other starch-related enzymes, such as starch synthases (SSI and SSIII), starch phosphorylases (PHS1), isoamylase and ß-amylase. The data obtained indicate that starch phosphorylation, hydrolyses and synthesis were affected by LESV and ESV1. Furthermore, incubation with LESV and ESV1 together exerted an additive effect on starch phosphorylation. In addition, a stable alteration of the glucan structures at the starch granule surface following treatment with LESV and ESV1 was observed. Here, we discuss all the observed changes that point to modifications in the glucan structures at the surface of the native starch granules and present a model to explain the existing processes.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Arabidopsis/metabolismo , Proteínas de Arabidopsis/metabolismo , Glucanos/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Almidón/metabolismo , Agua/metabolismo
2.
Plant Mol Biol ; 108(4-5): 469-480, 2022 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-34994920

RESUMEN

KEY MESSAGE: Association analysis resulted in the identification of specific StGWD alleles causing either an increase or decrease in starch phosphate content which was verified in diploid and tetraploid potato mapping populations. Potatoes are grown for various purposes like French fries, table potatoes, crisps and for their starch. One of the most important aspects of potato starch is that it contains a high amount of phosphate ester groups which are considered to be important for providing improved functionalization after derivatization processes. Little is known about the variation in phosphate content as such in different potato varieties and thus we studied the genetic diversity for this trait. From other studies it was clear that the phosphate content is controlled by a quantitative trait locus (QTL) underlying the candidate gene α-Glucan Water Dikinase (StGWD) on chromosome 5. We performed direct amplicon sequencing of this gene by Sanger sequencing. Sequences of two StGWD amplicons from a global collection of 398 commercial cultivars and progenitor lines were used to identify 16 different haplotypes. By assigning tag SNPs to these haplotypes, each of the four alleles present in a cultivar could be deduced and linked to a phosphate content. A high value for intra-individual heterozygosity was observed (Ho = 0.765). The average number of different haplotypes per individual (Ai) was 3.1. Pedigree analysis confirmed that the haplotypes are identical-by-descent (IBD) and offered insight in the breeding history of elite potato germplasm. Haplotypes originating from introgression of wild potato accessions carrying resistance genes could be traced. Furthermore, association analysis resulted in the identification of specific StGWD alleles causing either an increase or decrease in starch phosphate content varying from 12 nmol PO4/mg starch to 38 nmol PO4/mg starch. These allele effects were verified in diploid and tetraploid mapping populations and offer possibilities to breed and select for this trait.


Asunto(s)
Fosfatos/metabolismo , Fosfotransferasas (Aceptores Pareados)/genética , Solanum tuberosum/genética , Solanum tuberosum/metabolismo , Almidón/metabolismo , Tetraploidía , Alelos , Variación Genética , Haplotipos , Linaje , Fosfotransferasas (Aceptores Pareados)/metabolismo , Polimorfismo de Nucleótido Simple
3.
Sci Rep ; 11(1): 21774, 2021 11 05.
Artículo en Inglés | MEDLINE | ID: mdl-34741069

RESUMEN

The deazaflavin cofactor F420 is a low-potential, two-electron redox cofactor produced by some Archaea and Eubacteria that is involved in methanogenesis and methanotrophy, antibiotic biosynthesis, and xenobiotic metabolism. However, it is not produced by bacterial strains commonly used for industrial biocatalysis or recombinant protein production, such as Escherichia coli, limiting our ability to exploit it as an enzymatic cofactor and produce it in high yield. Here we have utilized a genome-scale metabolic model of E. coli and constraint-based metabolic modelling of cofactor F420 biosynthesis to optimize F420 production in E. coli. This analysis identified phospho-enol pyruvate (PEP) as a limiting precursor for F420 biosynthesis, explaining carbon source-dependent differences in productivity. PEP availability was improved by using gluconeogenic carbon sources and overexpression of PEP synthase. By improving PEP availability, we were able to achieve a ~ 40-fold increase in the space-time yield of F420 compared with the widely used recombinant Mycobacterium smegmatis expression system. This study establishes E. coli as an industrial F420-production system and will allow the recombinant in vivo use of F420-dependent enzymes for biocatalysis and protein engineering applications.


Asunto(s)
Riboflavina/análogos & derivados , Escherichia coli , Ácidos Glicéricos/metabolismo , Fosfoenolpiruvato/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Ácido Poliglutámico/metabolismo , Riboflavina/biosíntesis
4.
Appl Environ Microbiol ; 85(19)2019 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-31350314

RESUMEN

Phosphoenolpyruvate (PEP)/pyruvate interconversion is a major metabolic point in glycolysis and gluconeogenesis and is catalyzed by various sets of enzymes in different Archaea groups. In this study, we report the key enzymes that catalyze the anabolic and catabolic directions of the PEP/pyruvate interconversion in Haloferax mediterranei The in silico analysis showed the presence of a potassium-dependent pyruvate kinase (PYKHm [HFX_0773]) and two phosphoenol pyruvate synthetase (PPS) candidates (PPSHm [HFX_0782] and a PPS homolog protein named PPS-like [HFX_2676]) in this strain. Expression of the pykHm gene and ppsHm was induced by glycerol and pyruvate, respectively; whereas the pps-like gene was not induced at all. Similarly, genetic analysis and enzyme activities of purified proteins showed that PYKHm catalyzed the conversion from PEP to pyruvate and that PPSHm catalyzed the reverse reaction, while PPS-like protein displayed no function in PEP/pyruvate interconversion. Interestingly, knockout of the pps-like gene led to a 70.46% increase in poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) production. The transcriptome sequencing (RNA-Seq) and quantitative reverse transcription-PCR (qRT-PCR) results showed that many genes responsible for PHBV monomer supply and for PHBV synthesis were upregulated in a pps-like gene deletion strain and thereby improved PHBV accumulation. Additionally, our phylogenetic evidence suggested that PPS-like protein diverged from PPS enzyme and evolved as a distinct protein with novel function in haloarchaea. Our findings attempt to fill the gaps in central metabolism of Archaea by providing comprehensive information about key enzymes involved in the haloarchaeal PEP/pyruvate interconversion, and we also report a high-yielding PHBV strain with great future potentials.IMPORTANCEArchaea, the third domain of life, have evolved diversified metabolic pathways to cope with their extreme habitats. Phosphoenol pyruvate (PEP)/pyruvate interconversion during carbohydrate metabolism is one such important metabolic process that is highly differentiated among Archaea However, this process is still uncharacterized in the haloarchaeal group. Haloferax mediterranei is a well-studied haloarchaeon that has the ability to produce polyhydroxyalkanoates (PHAs) under unbalanced nutritional conditions. In this study, we identified the key enzymes involved in this interconversion and discussed their differences with their counterparts from other members of the Archaea and Bacteria domains. Notably, we found a novel protein, phosphoenolpyruvate synthetase-like (PPS-like), which exhibited high homology to PPS enzyme. However, PPS-like protein has evolved some distinct sequence features and functions, and strikingly the corresponding gene deletion helped to enhance poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) synthesis significantly. Overall, we have filled the gap in knowledge about PEP/pyruvate interconversion in haloarchaea and reported an efficient strategy for improving PHBV production in H. mediterranei.


Asunto(s)
Proteínas Arqueales/metabolismo , Haloferax mediterranei/enzimología , Fosfotransferasas (Aceptores Pareados)/metabolismo , Polihidroxialcanoatos/metabolismo , Proteínas Arqueales/genética , Carbono/metabolismo , Técnicas de Inactivación de Genes , Glicerol/metabolismo , Haloferax mediterranei/genética , Redes y Vías Metabólicas , Fosfotransferasas (Aceptores Pareados)/genética , Filogenia , Poliésteres/metabolismo , Ácido Pirúvico/metabolismo
5.
Plant J ; 95(1): 126-137, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29681129

RESUMEN

Starch phosphorylation by starch-related dikinases glucan, water dikinase (GWD) and phosphoglucan, water dikinase (PWD) is a key step in starch degradation. Little information is known about the precise structure of the glucan substrate utilized by the dikinases and about the mechanisms by which these structures may be influenced. A 50-kDa starch-binding protein named EARLY STARVATION1 (ESV1) was analyzed regarding its impact on starch phosphorylation. In various in vitro assays, the influences of the recombinant protein ESV1 on the actions of GWD and PWD on the surfaces of native starch granules were analyzed. In addition, we included starches from various sources as well as truncated forms of GWD. ESV1 preferentially binds to highly ordered, α-glucans, such as starch and crystalline maltodextrins. Furthermore, ESV1 specifically influences the action of GWD and PWD at the starch granule surface. Starch phosphorylation by GWD is decreased in the presence of ESV1, whereas the action of PWD increases in the presence of ESV1. The unique alterations observed in starch phosphorylation by the two dikinases are discussed in regard to altered glucan structures at the starch granule surface.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Almidón/metabolismo , Arabidopsis/enzimología , Clonación Molecular , Fosforilación
6.
Sci Rep ; 7(1): 9863, 2017 08 29.
Artículo en Inglés | MEDLINE | ID: mdl-28852191

RESUMEN

ABSTARCT: Regulation of storage root development by source strength remains largely unknown. The cassava storage root delay (srd) T-DNA mutant postpones storage root development but manifests normal foliage growth as wild-type plants. The SRD gene was identified as an orthologue of α-glucan, water dikinase 1 (GWD1), whose expression is regulated under conditions of light/dark cycles in leaves and is associated with storage root development. The GWD1-RNAi cassava plants showed both retarded plant and storage root growth, as a result of starch excess phenotypes with reduced photosynthetic capacity and decreased levels of soluble saccharides in their leaves. These leaves contained starch granules having greatly increased amylose content and type C semi-crystalline structures with increased short chains that suggested storage starch. In storage roots of GWD1-RNAi lines, maltose content was dramatically decreased and starches with much lower phosphorylation levels showed a drastically reduced ß-amylolytic rate. These results suggested that GWD1 regulates transient starch morphogenesis and storage root growth by decreasing photo-assimilation partitioning from the source to the sink and by starch mobilization in root crops.


Asunto(s)
Metabolismo de los Hidratos de Carbono , Glucanos/metabolismo , Manihot/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Raíces de Plantas/metabolismo , Almidón/metabolismo , ADN Bacteriano , Regulación de la Expresión Génica de las Plantas , Manihot/genética , Mutación , Fenotipo , Fosforilación , Fosfotransferasas (Aceptores Pareados)/genética , Fotosíntesis , Análisis de Secuencia de ADN
7.
Sci Rep ; 7(1): 3339, 2017 06 13.
Artículo en Inglés | MEDLINE | ID: mdl-28611462

RESUMEN

Starch phosphorylation occurs naturally during starch metabolism in the plant and is catalysed by glucan water dikinases (GWD1) and phosphoglucan water dikinase/glucan water dikinase 3 (PWD/GWD3). We generated six stable individual transgenic lines by over-expressing the potato GWD1 in rice. Transgenic rice grain starch had 9-fold higher 6-phospho (6-P) monoesters and double amounts of 3-phospho (3-P) monoesters, respectively, compared to control grain. The shape and topography of the transgenic starch granules were moderately altered including surface pores and less well defined edges. The gelatinization temperatures of both rice flour and extracted starch were significantly lower than those of the control and hence negatively correlated with the starch phosphate content. The 6-P content was positively correlated with amylose content and relatively long amylopectin chains with DP25-36, and the 3-P content was positively correlated with short chains of DP6-12. The starch pasting temperature, peak viscosity and the breakdown were lower but the setback was higher for transgenic rice flour. The 6-P content was negatively correlated with texture adhesiveness but positively correlated with the cohesiveness of rice flour gels. Our data demonstrate a way forward to employ a starch bioengineering approach for clean modification of starch, opening up completely new applications for rice starch.


Asunto(s)
Amilopectina/metabolismo , Amilosa/metabolismo , Oryza/genética , Fosfotransferasas (Aceptores Pareados)/genética , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente , Amilopectina/genética , Amilosa/genética , Grano Comestible/genética , Fosforilación , Fosfotransferasas (Aceptores Pareados)/metabolismo , Proteínas de Plantas/metabolismo , Solanum tuberosum/genética
8.
Physiol Plant ; 160(4): 447-457, 2017 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-28303594

RESUMEN

The genome of Arabidopsis thaliana encodes three glucan, water dikinases. Glucan, water dikinase 1 (GWD1; EC 2.7.9.4) and phosphoglucan, water dikinase (PWD; EC 2.7.9.5) are chloroplastic enzymes, while glucan, water dikinase 2 (GWD2) is cytosolic. Both GWDs and PWD catalyze the addition of phosphate groups to amylopectin chains at the surface of starch granules, changing its physicochemical properties. As a result, GWD1 and PWD have a positive effect on transitory starch degradation at night. Because of its cytosolic localization, GWD2 does not have the same effect. Single T-DNA mutants of either GWD1 or PWD or GWD2 have been analyzed during the entire life cycle of A. thaliana. We report that the three dikinases are all important for proper seed development. Seeds from gwd2 mutants are shrunken, with the epidermal cells of the seed coat irregularly shaped. Moreover, gwd2 seeds contain a lower lipid to protein ratio and are impaired in germination. Similar seed phenotypes were observed in pwd and gwd1 mutants, except for the normal morphology of epidermal cells in gwd1 seed coats. The gwd1, pwd and gwd2 mutants were also very similar in growth and flowering time when grown under continuous light and all three behaved differently from wild-type plants. Besides pinpointing a novel role of GWD2 and PWD in seed development, this analysis suggests that the phenotypic features of the dikinase mutants in A. thaliana cannot be explained solely in terms of defects in leaf starch degradation at night.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimología , Almidón/metabolismo , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Proteínas de Arabidopsis/genética , Metabolismo de los Hidratos de Carbono , Cloroplastos/metabolismo , Citosol/metabolismo , Luz , Mutación , Fosforilación , Fosfotransferasas (Aceptores Pareados)/genética , Fosfotransferasas (Aceptores Pareados)/metabolismo , Hojas de la Planta/enzimología , Hojas de la Planta/genética , Hojas de la Planta/crecimiento & desarrollo , Isoformas de Proteínas
9.
Arch Biochem Biophys ; 606: 26-33, 2016 09 15.
Artículo en Inglés | MEDLINE | ID: mdl-27431058

RESUMEN

Although oxidative stress is known to impede the tricarboxylic acid (TCA) cycle and oxidative phosphorylation, the nutritionally-versatile microbe, Pseudomonas fluorescens has been shown to proliferate in the presence of hydrogen peroxide (H2O2) and nitrosative stress. In this study we demonstrate the phospho-transfer system that enables this organism to generate ATP was similar irrespective of the carbon source utilized. Despite the diminished activities of enzymes involved in the TCA cycle and in the electron transport chain (ETC), the ATP levels did not appear to be significantly affected in the stressed cells. Phospho-transfer networks mediated by acetate kinase (ACK), adenylate kinase (AK), and nucleoside diphosphate kinase (NDPK) are involved in maintaining ATP homeostasis in the oxidatively-challenged cells. This phospho-relay machinery orchestrated by substrate-level phosphorylation is aided by the up-regulation in the activities of such enzymes like phosphoenolpyruvate carboxylase (PEPC), pyruvate orthophosphate dikinase (PPDK), and phosphoenolpyruvate synthase (PEPS). The enhanced production of phosphoenolpyruvate (PEP) and pyruvate further fuel the synthesis of ATP. Taken together, this metabolic reconfiguration enables the organism to fulfill its ATP need in an O2-independent manner by utilizing an intricate phospho-wire module aimed at maximizing the energy potential of PEP with the participation of AMP.


Asunto(s)
Adenosina Trifosfato/química , Pseudomonas fluorescens/metabolismo , Adenosina Monofosfato/química , Ciclo del Ácido Cítrico , Densitometría , Transporte de Electrón , Homeostasis , Peróxido de Hidrógeno/química , Lípidos/química , Oxidación-Reducción , Fosforilación Oxidativa , Estrés Oxidativo , Oxígeno/química , Fosfoenolpiruvato/química , Fosforilación , Fosfotransferasas (Aceptores Pareados)/metabolismo , Piruvato Ortofosfato Diquinasa/metabolismo , Especies Reactivas de Oxígeno/metabolismo
10.
Plant Biotechnol J ; 14(1): 398-408, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25989474

RESUMEN

Starch phosphate ester content is known to alter the physicochemical properties of starch, including its susceptibility to degradation. Previous work producing wheat (Triticum aestivum) with down-regulated glucan, water dikinase, the primary gene responsible for addition of phosphate groups to starch, in a grain-specific manner found unexpected phenotypic alteration in grain and growth. Here, we report on further characterization of these lines focussing on mature grain and early growth. We find that coleoptile length has been increased in these transgenic lines independently of grain size increases. No changes in starch degradation rates during germination could be identified, or any major alteration in soluble sugar levels that may explain the coleoptile growth modification. We identify some alteration in hormones in the tissues in question. Mature grain size is examined, as is Hardness Index and starch conformation. We find no evidence that the increased growth of coleoptiles in these lines is connected to starch conformation or degradation or soluble sugar content and suggest these findings provide a novel means of increasing coleoptile growth and early seedling establishment in cereal crop species.


Asunto(s)
Cotiledón/crecimiento & desarrollo , Endospermo/enzimología , Germinación , Glucanos/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Semillas/anatomía & histología , Triticum/enzimología , Agua/metabolismo , Amilopectina/metabolismo , Dureza , Modelos Biológicos , Tamaño de los Órganos , Fosfatos/metabolismo , Reguladores del Crecimiento de las Plantas/metabolismo , Hojas de la Planta/metabolismo , Proteínas de Plantas , Plantas Modificadas Genéticamente , Plantones/crecimiento & desarrollo , Almidón/metabolismo , Transgenes , Triticum/anatomía & histología , Triticum/embriología , alfa-Amilasas/metabolismo
11.
Ukr Biochem J ; 87(2): 66-75, 2015.
Artículo en Ucraniano | MEDLINE | ID: mdl-26255340

RESUMEN

It has been established that in cells of Nocardia vaccinii IMB B-7405 (surfactant producer) glucose catabolism is performed through pentose phosphate cycle as well as through gluconate (activity of NAD+-dependent glucose-6-phosphate dehydrogenase and FAD+-dependent glucose dehydrogenase 835 ± 41 and 698 ± 35 nmol.min-1.mg-1 of protein respectively). 6-Phosphogluconate formed in the gluconokinase reaction is involved in the pentose phosphate cycle (activity of constitutive NADP+-dependent 6-phosphogluconate dehydrogenase 357 ± 17 nmol.min-1.mg-1 of protein). Glycerol catabolism to dihydroxyacetonephosphate (the intermediate of glycolysis) may be performed in two ways: through glycerol-3-phosphate (glycerol kinase activity 244 ± 12 nmol.min-1.mg-1 of protein) and through dihydroxyacetone. Replenishment of the C4-dicarboxylic acids pool in N. vaccinii IMV B-7405 grown on glucose and glycerol occurs in the phosphoenolpyruvate(PEP)carboxylase reaction (714-803 nmol.min-1.mg-1 of protein). 2-Oxoglutarate was involved in tricarboxylic acid cycle by alternate pathway with the participation of 2-oxoglutarate synthase. The observed activity of both key enzymes of gluconeogenesis (PEP-carboxykinase and PEP-synthase), trehalose phosphate synthase and NADP+-dependent glutamate dehydrogenase confirmed the ability of IMV B-7405 strain to the synthesis of surface active glycoand aminolipids, respectively.


Asunto(s)
Proteínas Bacterianas/metabolismo , Glucosa/metabolismo , Glicerol/metabolismo , Nocardia/metabolismo , Ciclo del Ácido Cítrico/fisiología , Dihidroxiacetona/metabolismo , Dihidroxiacetona Fosfato/metabolismo , Gluconatos/metabolismo , Gluconeogénesis/fisiología , Glucosa 1-Deshidrogenasa/metabolismo , Glucosafosfato Deshidrogenasa/metabolismo , Glutamato Deshidrogenasa (NADP+)/metabolismo , Glicerofosfatos/metabolismo , Glucólisis/fisiología , Ácidos Cetoglutáricos/metabolismo , Cetona Oxidorreductasas/metabolismo , Vía de Pentosa Fosfato/fisiología , Fosfoenolpiruvato/metabolismo , Fosfoenolpiruvato Carboxiquinasa (ATP)/metabolismo , Fosfoenolpiruvato Carboxilasa/metabolismo , Fosfogluconato Deshidrogenasa/metabolismo , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo
12.
Biochem Cell Biol ; 93(3): 236-40, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25707819

RESUMEN

Phosphoenolpyruvate synthase (PEPs) catalyzes the conversion of pyruvate to phosphoenolpyruvate (PEP) using a two-step mechanism invoking a phosphorylated-His intermediate. Formation of PEP is an initial step in gluconeogenesis, and PEPs is essential for growth of Escherichia coli on 3-carbon sources such as pyruvate. The production of PEPs has also been linked to bacterial virulence and antibiotic resistance. As such, PEPs is of interest as a target for antibiotic development, and initial investigations of PEPs have indicated inhibition by sodium fluoride. Similar inhibition has been observed in a variety of phospho-transfer enzymes through the formation of metal fluoride complexes within the active site. Herein we quantify the inhibitory capacity of sodium fluoride through a coupled spectrophotometric assay. The observed inhibition provides indirect evidence for the formation of a MgF3(-) complex within the enzyme active site and insight into the phospho-transfer mechanism of PEPs. The effect of AlCl3 on PEPs enzyme activity was also assessed and found to decrease substrate binding and turnover.


Asunto(s)
Inhibidores Enzimáticos/farmacología , Fluoruros/farmacología , Compuestos de Magnesio/farmacología , Fosfotransferasas (Aceptores Pareados)/antagonistas & inhibidores , Fosfotransferasas (Aceptores Pareados)/metabolismo , Fluoruro de Sodio/farmacología , Cloruro de Aluminio , Compuestos de Aluminio/farmacología , Cloruros/farmacología , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/antagonistas & inhibidores , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Cinética , Fosfotransferasas (Aceptores Pareados)/genética , Piruvato-Sintasa/antagonistas & inhibidores , Piruvato-Sintasa/genética , Piruvato-Sintasa/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
13.
Wei Sheng Wu Xue Bao ; 54(1): 24-32, 2014 Jan 04.
Artículo en Chino | MEDLINE | ID: mdl-24783851

RESUMEN

OBJECTIVE: In order to redirect carbon flows into aromatic amino acids biosynthesis pathway and further improve the production of L-tryptophan in Corynebacterium pekinense PD-67, two schemes were implemented. First, the supply of phosphoenolpyruvate (PEP), one of precursors of L-tryptophan biosynthesis, was increased. Second, the feedback inhibition of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DS), a key enzyme in the aromatic amino acids biosynthesis, was relieved and the activity of DS was increased. METHODS: The phosphoenolpyruvate synthase gene (pps) was cloned from C. pekinense PD-67 chromosome by PCR and inserted into expression vector to construct a recombinant plasmid pXPPS; the aroG gene encoding DS isozymes was cloned from Escherichia coli chromosome by PCR and the mutation of Leu175Asp was introduced by site-directed mutagenesis using sequence-overlap extension PCR. The mutated gene named as aroGfbr was cloned to expression vector to construct a recombinant plasmid pXA; and the recombinant plasmid pXAPS co-expressing pps and aroGfbr was constructed. The three recombinant plasmids were transformed into PD-67 to generate the engineering strains PD-67/pXPS, PD-67/pXA and PD-67/pXAPS, respectively. The fermentation characteristics of the three engineering strains were investigated. RESULTS: The expression of pps and aroGfbr was confirmed by enzyme activity assays. The deregulation of feedback inhibition of AroGfbr was confirmed by determining DS activity in the presence of three aromatic amino acids. The overexpression of pps and aroGfbr resulted in an increase of L-tryptophan biosynthesis by 12.1% and 26.8%, respectively, while the co-expression of two genes increased the production of L-tryptophan by 35.9% in the engineering strain PD-67/pXAPS. CONCLUSION: Both of the overexpressions of the pps gene and aroGfbr gene can increase L-tryptophan biosynthesis, while the production was further improved by the co-expression of the two genes.


Asunto(s)
Corynebacterium/genética , Corynebacterium/metabolismo , Ingeniería Genética , Fosfotransferasas (Aceptores Pareados)/genética , Triptófano/biosíntesis , 3-Desoxi-7-Fosfoheptulonato Sintasa/metabolismo , Corynebacterium/enzimología , Expresión Génica , Vectores Genéticos/genética , Fosfotransferasas (Aceptores Pareados)/metabolismo , Análisis de Secuencia
14.
New Phytol ; 203(2): 495-507, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-24697163

RESUMEN

Glucan, water dikinase (GWD) is a key enzyme of starch metabolism but the physico-chemical properties of starches isolated from GWD-deficient plants and their implications for starch metabolism have so far not been described. Transgenic Arabidopsis thaliana plants with reduced or no GWD activity were used to investigate the properties of starch granules. In addition, using various in vitro assays, the action of recombinant GWD, ß-amylase, isoamylase and starch synthase 1 on the surface of native starch granules was analysed. The internal structure of granules isolated from GWD mutant plants is unaffected, as thermal stability, allomorph, chain length distribution and density of starch granules were similar to wild-type. However, short glucan chain residues located at the granule surface dominate in starches of transgenic plants and impede GWD activity. A similarly reduced rate of phosphorylation by GWD was also observed in potato tuber starch fractions that differ in the proportion of accessible glucan chain residues at the granule surface. A model is proposed to explain the characteristic morphology of starch granules observed in GWD transgenic plants. The model postulates that the occupancy rate of single glucan chains at the granule surface limits accessibility to starch-related enzymes.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Almidón/química , Almidón/metabolismo , Proteínas de Arabidopsis/genética , Glucosiltransferasas/genética , Glucosiltransferasas/metabolismo , Isoamilasa/metabolismo , Proteínas de Transporte de Monosacáridos/genética , Proteínas de Transporte de Monosacáridos/metabolismo , Mutación , Fosforilación , Fosfotransferasas (Aceptores Pareados)/genética , Plantas Modificadas Genéticamente , Solanum tuberosum , Almidón/genética , Almidón/ultraestructura , Propiedades de Superficie , beta-Amilasa/metabolismo
15.
Plant Signal Behav ; 9(7): e28892, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25763482

RESUMEN

Starch phosphorylation mediated by the α-glucan, water dikinase (GWD) is crucial for transitory starch metabolism. The impact of the GWD action on transitory starch metabolism was analyzed in Arabidopsis mutants either lacking or revealing different reduced levels of GWD activity. In these mutants, glucose 6-phosphate (G6P) levels of the transitory leaf starch, the average leaf starch content, as well as alterations in the growth phenotype were determined under different light length conditions, including continuous light. Based on biochemical and growth phenotypical data, we found that the length of the light phase affects the phosphorylation state of the transitory starch and, by this, the average leaf starch content and the resulting growth of the plants. Additionally, we discuss data referring to an involvement of the GWD mediated glucan phosphorylation in starch synthesis, as, e.g., starch phosphorylation occurred even when a dark phase was omitted.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Glucanos/metabolismo , Luz , Fosfotransferasas (Aceptores Pareados)/metabolismo , Fotoperiodo , Hojas de la Planta/metabolismo , Almidón/metabolismo , Arabidopsis/crecimiento & desarrollo , Glucosa-6-Fosfato/metabolismo , Fosforilación , Plastidios/metabolismo , Agua
16.
J Biotechnol ; 167(3): 309-15, 2013 Sep 10.
Artículo en Inglés | MEDLINE | ID: mdl-23871654

RESUMEN

Pseudomonas fluorescens invoked a metabolic reconfiguration that resulted in enhanced production of pyruvate under the challenge of hydrogen peroxide (H2O2). Although this stress led to a sharp reduction in the activities of numerous tricarboxylic acid (TCA) cycle enzymes, there was a marked increase in the activities of catalase and various NADPH-generating enzymes to counter the oxidative burden. The upregulation of phosphoenolpyruvate synthase (PEPS) and pyruvate kinase (PK) coupled with the reduction of pyruvate dehydrogenase (PDH) in the H2O2-challenged cells appear to be important contributors to the elevated levels of pyruvate found in these bacteria. Increased pyruvate synthesis was evident in the presence of a variety of carbon sources including d-glucose. Intact cells rapidly consumed d-glucose with the concomitant formation of this monocarboxylic acid. At least a 12-fold increase in pyruvate production within 1h was observed in the stressed cells. These findings may be exploited in the development of technologies aimed at the conversion of carbohydrates into pyruvate.


Asunto(s)
Peróxido de Hidrógeno/farmacología , Estrés Oxidativo/efectos de los fármacos , Pseudomonas fluorescens/efectos de los fármacos , Piruvatos/metabolismo , Redes y Vías Metabólicas , Fosfotransferasas (Aceptores Pareados)/metabolismo , Pseudomonas fluorescens/metabolismo , Piruvato Quinasa/metabolismo , Regulación hacia Arriba/efectos de los fármacos
17.
J Biotechnol ; 167(2): 111-22, 2013 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-23792782

RESUMEN

Xanthomonas campestris pv. campestris (Xcc) synthesizes huge amounts of the exopolysaccharide xanthan and is a plant pathogen affecting Brassicaceae, among them the model plant Arabidopsis thaliana. Xanthan is produced as a thickening agent at industrial scale by fermentation of Xcc. In an approach based on 2D gel electrophoresis, protein samples from different growth phases were characterized to initialize analysis of the Xanthomonas phosphoproteome. The 2D gels were stained with Pro-Q Diamond phosphoprotein stain to identify putatively phosphorylated proteins. Spots of putatively phosphorylated proteins were excised from the gel and analyzed by mass spectrometry. Three proteins were confirmed to be phosphorylated, the phosphoglucomutase/phosphomannomutase XanA that is important for xanthan and lipopolysaccharide biosynthesis, the phosphoenolpyruvate synthase PspA that is involved in gluconeogenesis, and an anti-sigma factor antagonist RsbR that was so far uncharacterized in xanthomonads. The growth phase in which the samples were collected had an influence on protein phosphorylation in Xcc, particular distinct in case of RsbR, which was phosphorylated during the transition from the late exponential growth phase to the stationary phase.


Asunto(s)
Proteínas Bacterianas/metabolismo , Proteómica/métodos , Xanthomonas campestris/metabolismo , Secuencia de Aminoácidos , Electroforesis en Gel Bidimensional/métodos , Gluconeogénesis/fisiología , Lipopolisacáridos/metabolismo , Datos de Secuencia Molecular , Fosfoglucomutasa/metabolismo , Fosforilación , Fosfotransferasas (Aceptores Pareados)/metabolismo , Fosfotransferasas (Fosfomutasas)/metabolismo , Polisacáridos Bacterianos/metabolismo , Xanthomonas campestris/crecimiento & desarrollo
18.
Nat Chem Biol ; 9(7): 416-21, 2013 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23708076

RESUMEN

Despite its importance in central metabolism and bacterial cell signaling, protein histidine phosphorylation has remained elusive with respect to its extent and functional roles in biological systems because of the lack of adequate research tools. We report the development of the first pan-phosphohistidine (pHis) antibody using a stable pHis mimetic as the hapten. This antibody was successfully used in ELISA, western blotting, dot blot assays and immunoprecipitation and in detection and identification of histidine-phosphorylated proteins from native cell lysates when coupled with MS analysis. We also observed that the amount of protein pHis in Escherichia coli lysates depends on carbon source and nitrogen availability in the growth medium. In particular, we found that the amount of pHis on phosphoenolpyruvate synthase (PpsA) is sensitive to nitrogen availability in vivo and that α-ketoglutarate inhibits phosphotransfer from phosphorylated PpsA to pyruvate. We expect this antibody to open opportunities for investigating other pHis proteins and their functions.


Asunto(s)
Anticuerpos/química , Histidina/química , Proteínas/química , Relación Dosis-Respuesta a Droga , Ensayo de Inmunoadsorción Enzimática , Escherichia coli/metabolismo , Proteínas de Escherichia coli/química , Histidina/análogos & derivados , Concentración de Iones de Hidrógeno , Iones , Ácidos Cetoglutáricos/metabolismo , Espectrometría de Masas , Fosforilación , Fosfotransferasas (Aceptores Pareados)/metabolismo , Piruvato-Sintasa/química , Proteínas Recombinantes/química
19.
Mikrobiol Z ; 75(5): 18-26, 2013.
Artículo en Ruso | MEDLINE | ID: mdl-24479309

RESUMEN

The effect of yeast autolysate and microelements on synthesis of surface-active substances (SAS, biosurfactants) was investigated under cultivation of Acinetobacter calcoaceticus IMV B-7241 on various carbon substrates (n-hexadecane, ethanol, glycerol). The authors have shown a possibility to substitute the yeast autolysate and microelement mixture in the composition of ethanol- and n-hexadecane-containing media by copper sulfate (0.16 micromol/l) and iron sulfate (3.6 micromol/l), and in the medium with glycerol by 0.21 mmol/l of KCl, 38 micromol/l of zinc sulfate and 0.16 micromol/l of copper sulfate. Under such conditions of cultivation of the strain IMV B-7241 the SAS concentration exceeded that on the initial media, which contained the yeast autolysate and microelements, 1.2-1.6 times. The authors have also established the activating effect of low (0.01 mM) concentrations of Fe2+ on activity of the enzymes of biosynthesis of surface-active amino- (NADP-dependent glutamate dehydrogenase) and glycolipids (phosphoenolpyruvate(PhEP)-synthetase, PhEP-carboxykinase), as well as of anaplerotic reaction(PhEP-carboxylase). A necessity to introduce zinc cations into glycerol-containing medium is determined by their stimulating effect on activity of 4-dinitroso-N,N-dimethylaniline-dependent alcohol dehydrogenase--one of the enzymes of this substrate catabolism in A. calcoaceticus IMV B-7241.


Asunto(s)
Acinetobacter calcoaceticus/metabolismo , Alcanos/metabolismo , Proteínas Bacterianas/metabolismo , Mezclas Complejas/farmacología , Etanol/metabolismo , Glicerol/metabolismo , Tensoactivos/metabolismo , Alcohol Deshidrogenasa/metabolismo , Mezclas Complejas/química , Mezclas Complejas/metabolismo , Sulfato de Cobre/metabolismo , Sulfato de Cobre/farmacología , Compuestos Ferrosos/metabolismo , Compuestos Ferrosos/farmacología , Glutamato Deshidrogenasa (NADP+)/metabolismo , Glucolípidos/biosíntesis , Fosfoenolpiruvato Carboxilasa/metabolismo , Fosfotransferasas (Aceptores Pareados)/metabolismo , Levaduras/química , Sulfato de Zinc/metabolismo , Sulfato de Zinc/farmacología
20.
Genetika ; 48(5): 608-16, 2012 May.
Artículo en Ruso | MEDLINE | ID: mdl-22830256

RESUMEN

By means of plasposon mutagenesis, mutants of Burkholderia cenocepacia 370 with the change in production of N-acyl-homoserine lactones (AHL), signal molecules of the Quorum Sensing system of regulation, were obtained. To localize plasposon insertions in mutant strains, fragments of chromosomal DNA containing plasposons were cloned, adjacent DNA regions sequenced, and a search for homologous nucleotide sequences in the GeneBank was initiated. It has been shown that the insertion of plasposon into gene lon encoding lon proteinase drastically decreases AHL synthesis. Upon insertion of plasposon into gene pps encoding phosphoenolpyruvate-synthase, enhancement of AHL production is observed. In mutant carrying inactivated gene lon, a strong decline of extracellular protease activity, hemolytic, and chitinolytic activities was observed in comparison with the original strain; lipase activity was not changed in this mutant. Mutation in gene pps did not affect these properties of B. cenocepacia 370. Mutations in genes lon and pps reduced the virulence of bacteria upon infection of mice.


Asunto(s)
Acil-Butirolactonas/metabolismo , Burkholderia cenocepacia/genética , Regulación Bacteriana de la Expresión Génica , Fosfotransferasas (Aceptores Pareados)/genética , Proteasa La/genética , Percepción de Quorum/genética , Animales , Biopelículas , Burkholderia cenocepacia/crecimiento & desarrollo , Burkholderia cenocepacia/patogenicidad , Masculino , Ratones , Mutación , Fosfotransferasas (Aceptores Pareados)/metabolismo , Proteasa La/metabolismo , Virulencia/genética
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