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1.
Int J Mol Sci ; 22(14)2021 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-34299288

RESUMEN

(1) Background: Short-read sequencing allows for the rapid and accurate analysis of the whole bacterial genome but does not usually enable complete genome assembly. Long-read sequencing greatly assists with the resolution of complex bacterial genomes, particularly when combined with short-read Illumina data. However, it is not clear how different assembly strategies affect genomic accuracy, completeness, and protein prediction. (2) Methods: we compare different assembly strategies for Haemophilus parasuis, which causes Glässer's disease, characterized by fibrinous polyserositis and arthritis, in swine by using Illumina sequencing and long reads from the sequencing platforms of either Oxford Nanopore Technologies (ONT) or SMRT Pacific Biosciences (PacBio). (3) Results: Assembly with either PacBio or ONT reads, followed by polishing with Illumina reads, facilitated high-quality genome reconstruction and was superior to the long-read-only assembly and hybrid-assembly strategies when evaluated in terms of accuracy and completeness. An equally excellent method was correction with Homopolish after the ONT-only assembly, which had the advantage of avoiding hybrid sequencing with Illumina. Furthermore, by aligning transcripts to assembled genomes and their predicted CDSs, the sequencing errors of the ONT assembly were mainly indels that were generated when homopolymer regions were sequenced, thus critically affecting protein prediction. Polishing can fill indels and correct mistakes. (4) Conclusions: The assembly of bacterial genomes can be directly achieved by using long-read sequencing techniques. To maximize assembly accuracy, it is essential to polish the assembly with homologous sequences of related genomes or sequencing data from short-read technology.


Asunto(s)
Haemophilus parasuis/genética , Secuenciación de Nucleótidos de Alto Rendimiento/métodos , Secuenciación de Nanoporos/métodos , Análisis de Secuencia de ADN/métodos , Animales , Genoma Bacteriano , Haemophilus parasuis/aislamiento & purificación , Filogenia , Alineación de Secuencia , Porcinos
2.
Biomed Res Int ; 2021: 5588855, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33937398

RESUMEN

To construct a protein fingerprint database of Haemophilus parasuis (H. parasuis), thus improving its clinical diagnosis efficiency. A total of 15 H. parasuis standard strains were collected to establish a protein fingerprint database of H. parasuis using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), and the effects of different culture media and culture time on the quality and identification results of the protein fingerprint were investigated. The results showed that tryptone soy agar (TSA) and tryptone soy broth (TSB) media and different incubation times had no significant effect on the characteristic peaks of the protein profiles. In addition, 18 clinical isolates were used to compare the identification results of the self-built protein fingerprint database, PCR detection, and basic database. Only one strain was identified in the original VITEK-MS system database, while the self-made protein fingerprint database of H. parasuis was 100% accurate for the detection of 18 clinical isolate strains. The protein fingerprint database of H. parasuis built by our laboratory is suitable for rapid clinical diagnosis of H. parasuis, due to its high accuracy, efficiency, and strong specificity.


Asunto(s)
Infecciones por Haemophilus , Haemophilus parasuis , Mapeo Peptídico/métodos , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos , Enfermedades de los Porcinos , Animales , Infecciones por Haemophilus/diagnóstico , Infecciones por Haemophilus/microbiología , Haemophilus parasuis/química , Haemophilus parasuis/clasificación , Haemophilus parasuis/aislamiento & purificación , Porcinos , Enfermedades de los Porcinos/diagnóstico , Enfermedades de los Porcinos/microbiología
3.
Vet Med Sci ; 7(4): 1339-1346, 2021 07.
Artículo en Inglés | MEDLINE | ID: mdl-34021725

RESUMEN

BACKGROUND: Porcine respiratory diseases remain the biggest challenge in pig-based food production and are a public health concern. Despite control measures, persistent outbreaks have been reported worldwide. OBJECTIVE: To establish an early detection mechanism for pig farm disease outbreaks based on slaughterhouse risk and environmental assessment. METHODS: We investigated the prevalence and risk factors of porcine respiratory disease-causing pathogens including Mycoplasma hyopneumoniae (MHP), porcine circovirus type 2 (PCV2), porcine reproductive and respiratory syndrome virus (PRRSV) and Haemophilus parasuis (HPS). Polymerase chain reaction (PCR) was used to analyse the lungs of 491 pigs from 19 slaughterhouses across 11 cities in Shanxi Province, China. RESULTS: PCR detected MHP, PCV2, PPRSV and HPS in 76.99%, 67.00%, 11.82% and 19.55% of the samples, respectively; 10.12% were negative for all four pathogens. Co-positivity rates for two and three pathogens were identified. The results confirmed significant correlations between PCV2 and MHP (p = .001, p < .05), HPS and PCV2 (p = .01, p < .05) and MHP and PRRSV (p = .01, p < .05). No significant correlation was observed between HPS and MHP (p = .067, p > .05). Positive MHP and PCV2 rates were low in areas with high vegetation coverage. The overall pathogen positivity rate was higher in both lower and higher temperature environments. CONCLUSIONS: Interactions among pathogens may increase disease severity. Furthermore, environmental assessment and pathogen surveillance within pig slaughterhouses can be an effective approach for early detection and mitigation of new disease threats before broad dissemination occurs among a herd.


Asunto(s)
Infecciones por Circoviridae/veterinaria , Infecciones por Haemophilus/veterinaria , Neumonía Porcina por Mycoplasma/epidemiología , Síndrome Respiratorio y de la Reproducción Porcina/epidemiología , Mataderos , Animales , China/epidemiología , Infecciones por Circoviridae/epidemiología , Infecciones por Circoviridae/virología , Circovirus/aislamiento & purificación , Infecciones por Haemophilus/epidemiología , Infecciones por Haemophilus/microbiología , Haemophilus parasuis/aislamiento & purificación , Mycoplasma hyopneumoniae/aislamiento & purificación , Neumonía Porcina por Mycoplasma/microbiología , Síndrome Respiratorio y de la Reproducción Porcina/virología , Virus del Síndrome Respiratorio y Reproductivo Porcino/aislamiento & purificación , Prevalencia , Factores de Riesgo , Sus scrofa , Porcinos
4.
J Microbiol Methods ; 182: 106159, 2021 03.
Artículo en Inglés | MEDLINE | ID: mdl-33548394

RESUMEN

Glaesserella parasuis consists of 15 serovars with some of them highly virulent and some of them avirulent. As killed vaccines do not provide crossprotection across serovars, serotyping is of importance. Serotyping, previously done by gel diffusion, is now done by multiplex PCR followed by electrophoresis. Accurately differentiating 15 serovars by electrophoresis is problematic. To overcome this problem, a Luminex microbead-based multiplex assay was used to differentiate the serovars. The assay consisted of a multiplex PCR assay followed by hybridisation to microbeads which were then analysed on a Luminex machine. The newly developed assay was compared to the multiplex serotyping PCR and the gel diffusion/indirect haemagglutination assay (GD/IHA). The microbead-based assay worked very well for the 15 reference strains but when used on the 74 Australian field strains displayed some problems. The main problems were with the eight out of nine serovar 4 field isolates and the five serovar 7 and three serovar 14 field isolates. While the microbead-based assay could differentiate between the serovar 5 and 12 reference strains, which the serovar multiplex PCR could not, all four field isolates identified by GD/IHA as serovar 12 were identified as serovar 5 by the microbead-based assay. Serovar 4 has been noted to have a high diversity especially among strains from different countries. Our work clearly shows that the diversity of strains at both the national and the international level has to be taken into account when developing diagnostic assays.


Asunto(s)
Infecciones por Haemophilus , Haemophilus parasuis/aislamiento & purificación , Serogrupo , Serotipificación/métodos , Enfermedades de los Porcinos , Animales , Australia , Infecciones por Haemophilus/diagnóstico , Infecciones por Haemophilus/microbiología , Porcinos , Enfermedades de los Porcinos/diagnóstico , Enfermedades de los Porcinos/microbiología
5.
Vet Immunol Immunopathol ; 234: 110205, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33636545

RESUMEN

Glaesserella (Haemophilus) parasuis is a part of the microbiota of healthy pigs and also causes the systemic condition called Glässer's disease. G. parasuis is categorized by it capsular polysaccharide into 15 serovars. Because of the serovar and strain specific immunity generated by whole cell vaccines and the rapid onset of disease, G. parasuis has been difficult to control in the swine industry. This report investigated the protection afforded by the use of two serovar 5 isolates (Nagasaki and HS069) as whole cell, killed bacterins against homologous challenge and heterologous challenge with the serovar 1 strain 12939 to better understand bacterin generated immunity. Both bacterins induced a high antibody titer to the vaccine strain and the heterologous challenge strain. Protection was seen with both bacterins against homologous challenge; however, after heterologous challenge, the HS069 bacterin provided complete protection and all Nagasaki bacterin vaccinated animals succumbed to disease. The difference in protection appears to be due to differences in antibody specificity and the capacity of induced antibody to fix complement and opsonize G. parasuis, as shown by Western blotting and functional assays. This report shows the importance of strain selection when developing bacterin vaccines, as some strains are better able to generate heterologous protection. The difference in protection seen here can also be utilized to detect proteins of interest for subunit vaccine development.


Asunto(s)
Infecciones por Haemophilus/inmunología , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/clasificación , Haemophilus parasuis/inmunología , Inmunidad Heteróloga , Serogrupo , Enfermedades de los Porcinos/inmunología , Factores de Edad , Animales , Anticuerpos Antibacterianos/sangre , Vacunas Bacterianas/administración & dosificación , Vacunas Bacterianas/inmunología , Infecciones por Haemophilus/microbiología , Vacunas contra Haemophilus/administración & dosificación , Vacunas contra Haemophilus/inmunología , Haemophilus parasuis/aislamiento & purificación , Porcinos , Enfermedades de los Porcinos/microbiología , Vacunación , Vacunas de Subunidad/administración & dosificación , Vacunas de Subunidad/inmunología
6.
Mol Cell Biochem ; 472(1-2): 45-56, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-32519231

RESUMEN

Glässer's disease, caused by Haemophilus parasuis (H. parasuis), is associated with vascular damage and vascular inflammation in pigs. Therefore, early assessment and treatment are essential to control the inflammatory disorder. MicroRNAs have been shown to be involved in the vascular pathology. Baicalin has important pharmacological functions, including anti-inflammatory, antimicrobial and antioxidant effects. In this study, we investigated the changes of microRNAs in porcine aortic vascular endothelial cells (PAVECs) induced by H. parasuis and the effect of baicalin in this model by utilizing high-throughput sequencing. The results showed that 155 novel microRNAs and 76 differentially expressed microRNAs were identified in all samples. Subsequently, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of the target genes of the differentially expressed microRNAs demonstrated that regulation of actin cytoskeleton, focal adhesion, ECM-receptor interaction, bacterial invasion of epithelial cells, and adherens junction were the most interesting pathways after PAVECs were infected with H. parasuis. In addition, when the PAVECs were pretreated with baicalin, mismatch repair, peroxisome, oxidative phosphorylation, DNA replication, and ABC transporters were the most predominant signaling pathways. STRING analysis showed that most of the target genes of the differentially expressed microRNAs were associated with each other. The expression levels of the differentially expressed microRNAs were negatively co-regulated with their target genes' mRNA following pretreatment with baicalin in the H. parasuis-induced PAVECs using co-expression networks analysis. This is the first report that microRNAs might have key roles in inflammatory damage of vascular tissue during H. parasuis infection. Baicalin regulated the microRNAs changes in the PAVECs following H. parasuis infection, which may represent useful novel targets to prevent or treat H. parasuis infection.


Asunto(s)
Aorta/metabolismo , Endotelio Vascular/metabolismo , Flavonoides/farmacología , Regulación de la Expresión Génica/efectos de los fármacos , Infecciones por Haemophilus/microbiología , MicroARNs/genética , Transcriptoma/efectos de los fármacos , Animales , Animales Recién Nacidos , Antiinflamatorios no Esteroideos/farmacología , Aorta/citología , Aorta/microbiología , Endotelio Vascular/citología , Endotelio Vascular/microbiología , Haemophilus parasuis/aislamiento & purificación , Porcinos
7.
Vet Med Sci ; 6(4): 894-900, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32452632

RESUMEN

Haemophilus parasuis is the etiological agent of Glässer's disease in swine, which associates with severe economic losses in the swine industry worldwide. A real-time recombinase polymerase amplification assay (real-time RPA) was developed for direct and rapid detection of H. parasuis basing on the translation-initiation factor IF2 (infB) gene. The assay was performed successfully at 39°C for 20 min in Genie III, which is portable and chargeable by battery. The developed assay was highly specific for H. parasuis, and the limit of detection of the assay was 6.0 × 103  fg of H. parasuis genomic DNA, which was the same as that of a real-time PCR developed previously. The assay was further evaluated on 68 pig tissue samples, and 18 (26.5%), 20 (29.4%), and 8 (11.8%) samples were positive for H. parasuis by the real-time RPA, real-time PCR and bacterial isolation, respectively. With the bacteria isolation as the reference method, the real-time RPA showed a diagnostic specificity of 83.33% and a diagnostic sensitivity of 100%. The above data demonstrated the well-potentiality and usefulness of the developed real-time RPA assay in reliable diagnosis of swine Glässer's disease, especially in resource limited settings.


Asunto(s)
Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/aislamiento & purificación , Técnicas de Amplificación de Ácido Nucleico/veterinaria , Enfermedades de los Porcinos/diagnóstico , Animales , Infecciones por Haemophilus/diagnóstico , Infecciones por Haemophilus/virología , Haemophilus parasuis/enzimología , Técnicas de Amplificación de Ácido Nucleico/métodos , Recombinasas/análisis , Sus scrofa , Porcinos , Enfermedades de los Porcinos/virología
8.
BMC Vet Res ; 15(1): 436, 2019 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-31796026

RESUMEN

BACKGROUND: Haemophilus parasuis is a commensal pathogen in the swine upper respiratory tract and causes Glässer's disease. Surveillance, screening for infection, and vaccination response of H. parasuis is hindered by the lack of a rapid antibody detection method. RESULTS: In the present study, a monomeric autotransporter was identified as a novel antigen for developing an indirect ELISA. The autotransporter passenger domain (Apd) was expressed, purified, and demonstrated to be specific in ELISA and western blotting. Mouse antiserum of recombinant Apd (rApd) recognized native Apd in the 15 serotype reference strains and five non-typeable isolate stains, but showed no reaction with seven other bacterial pathogens. The rApd ELISA was optimized and validated using 67 serum samples with known background, including 27 positive sera from experimentally infected and vaccinated pigs along with 40 negative sera that had been screened with H. parasuis whole cell ELISA from clinically healthy herds. The rApd ELISA provided positive and negative percent agreements of 96.4 and 94.9%, respectively, and an AUC value of 0.961, indicating that the assay produced accurate results. CONCLUSION: Apd was a universal antigen component among 15 serotype and non-typeable strains of H. parasuis and was also specific to this pathogen. The rApd ELISA could detect antibodies elicited by H. parasuis infection and vaccination, thereby exhibiting the potential to be applied for Glässer's disease diagnosis, H. parasuis vaccination evaluation, and large-scale serological surveillance.


Asunto(s)
Ensayo de Inmunoadsorción Enzimática/veterinaria , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/aislamiento & purificación , Enfermedades de los Porcinos/microbiología , Sistemas de Secreción Tipo V/inmunología , Animales , Proteínas Bacterianas/genética , Proteínas Bacterianas/inmunología , Proteínas Bacterianas/metabolismo , Vacunas Bacterianas/inmunología , Ensayo de Inmunoadsorción Enzimática/métodos , Regulación Bacteriana de la Expresión Génica , Infecciones por Haemophilus/diagnóstico , Infecciones por Haemophilus/microbiología , Infecciones por Haemophilus/prevención & control , Haemophilus parasuis/inmunología , Porcinos , Enfermedades de los Porcinos/diagnóstico , Enfermedades de los Porcinos/prevención & control
9.
Vet Microbiol ; 231: 40-44, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30955821

RESUMEN

Haemophilus parasuis is a common colonizer of the upper respiratory tract of swine and frequently causes disease, especially in weaner pigs. To date, limited epidemiological data was available for H. parasuis from healthy pigs, which might be carriers of potential pathogenic strains. In this study, from September 2016 to October 2017, we investigated the prevalence and characteristics of H. parasuis from healthy pigs in China. Totally, we obtained 244 isolates from 1675 nasal samples from 6 provinces. H. parasuis isolation was more successful in weaner pigs (22.6%, 192/849), followed by finisher pigs (9.3%, 43/463), and sows (2.5%, 9/363). The most prevalent serovars were 7 (20.1%, 49/244), followed by 3 (14.8%, 36/244), 2 (14.3%, 35/244), 11 (12.7%, 31/244), 5/12 (5.7%, 14/244) and 4 (2.5%, 6/244). Bimodal or multimodal distributions of MICs were observed for most of the tested drugs, which suggested the presence of non-wild type populations. It was noted that the MIC90 values of tilmicosin (64 µg/ml) was relatively higher than that reported in previous studies. Our results suggest that: 1) potentially pathogenic serovars of H. parasuis are identified in healthy pigs, and 2) elevated MICs and presence of mechanisms of resistance not yet described for clinically important antimicrobial agents would increase the burden of disease caused by H. parasuis.


Asunto(s)
Antibacterianos/farmacología , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/efectos de los fármacos , Enfermedades de los Porcinos/epidemiología , Porcinos/microbiología , Mataderos , Animales , Portador Sano/epidemiología , Portador Sano/microbiología , Portador Sano/veterinaria , China/epidemiología , Granjas , Infecciones por Haemophilus/epidemiología , Haemophilus parasuis/aislamiento & purificación , Pruebas de Sensibilidad Microbiana , Nariz/microbiología , Reacción en Cadena de la Polimerasa , Prevalencia , Serogrupo , Enfermedades de los Porcinos/microbiología , Destete
10.
Vet Microbiol ; 230: 117-122, 2019 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-30827376

RESUMEN

Haemophilus parasuis is a commensal Gram-negative bacterial pathogen in the upper respiratory tract of pigs, which causes Glässer's disease. More than 15 serotypes of H. parasuis have been identified with apparent differences in virulence. In this research, we surveyed the prevalence and distribution of serotypes and known virulence genes of the H. parasuis isolates collected from sick and healthy pigs in Quang Binh and Thua Thien Hue provinces in Central Vietnam. By using bacterial isolation and polymerase chain reaction (PCR), 56 out of 814 (6.9%) samples were positive for H. parasuis. The most prevalent serotypes were serotype 5 (15/56, 26.8%), followed by serotype 2 (13/56, 23.2%) and serotype 4 (10/56, 17.9%). The vta1 was the most frequently detected virulence gene which was present in 62.5% of the strains, followed by vta3 (42.9%), vta2 (39.3%), HPM-1371 (35.7%), capD (30.4%), HPM-1372 (12.5%), lsgB and HPM-1373 (both shared 8.9%). Strong correlations between some serotypes and known virulence genes were observed, in which virulence genes HPM-1371, HPM-1372, vta3, vta2 and capD were mainly clustered in serotypes 5/12, and vta2 clustered in serotype 2. This study presents the first baseline information on the epidemiological characteristics of H. parasuis isolates from Central Vietnam.


Asunto(s)
Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/genética , Haemophilus parasuis/patogenicidad , Factores de Virulencia/genética , Mataderos , Animales , Granjas , Haemophilus parasuis/aislamiento & purificación , Ganado/virología , Reacción en Cadena de la Polimerasa , Serogrupo , Porcinos/virología , Enfermedades de los Porcinos/microbiología , Vietnam , Virulencia/genética
11.
Plasmid ; 98: 8-14, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-30003899

RESUMEN

Some Haemophilus parasuis strains display resistance to transformation with Escherichia.coli-derived plasmids. This property limits the application of genetic approaches previously developed for H. parasuis. The present study showed that natural transformation with the shuttle plasmid pS2UK led to allelic exchange in H. parasuis strains SH0165 and CF7066. Furthermore, natural transformation with pS2UK yielded allelic exchange mutants in 10 of 17 H. parasuis strains, similar to results using the suicide plasmid pK2UK. Subsequently, 17 H. parasuis strains were transformed with pS2UK by electroporation and 13 obtained the transformants harboring the complete plasmid molecules. As a result, natural transformation of homologous blank strains with the H. parasui-derived plasmids significantly improved the transformation efficiency targeted at obtaining allelic exchange mutants. In addition, shuttle plasmids pS1UG and pSHUK that carried the different homologous arm sequences also displayed the increased transformation efficiency after they were replicated in homologous H. parasuis cells. The approach described here not only improved the efficiency of natural transformation of H. parasuis, but also enlarged the range of transformable H. parasuis strains, thereby enabling application of H. parasuis-specific genetic manipulation techniques in a wider range of isolates.


Asunto(s)
ADN Bacteriano/genética , Electroporación/métodos , Vectores Genéticos/administración & dosificación , Haemophilus parasuis/genética , Plásmidos/genética , Transformación Bacteriana , Metilación de ADN , Haemophilus parasuis/aislamiento & purificación
12.
Vet Microbiol ; 217: 32-35, 2018 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29615253

RESUMEN

Haemophilus parasuis-related infections, especially among weaners are responsible for major economic losses on pig farms. A method for broth microdilution susceptibility testing of this fastidious organism has recently been developed, but the suitability of this method needs to be validated in a large collection of current field isolates. Using the proposed method, this study tested 123 H. parasuis isolates from different geographic regions in Germany (including five isolates from the Netherlands and Belgium) against a panel of 24 antimicrobial agents and antimicrobial combinations. The isolates were collected between 2013 and 2016. As there are no H. parasuis specific breakpoints available, the tested isolates could not be classified as susceptible, intermediate or resistant. Bi- or multi-modal distributions of minimum inhibitory concentration (MIC) values were observed for some antimicrobial agents (e.g. aminoglycosides, ß-lactams, fluoroquinolones and tetracyclines), indicative of non-wild type populations of H. parasuis. Susceptibility testing revealed broad distributions of MIC values for various antimicrobials (e.g. neomycin, streptomycin, tetracycline, tiamulin, tilmicosin, trimethoprim/sulfamethoxazole and tulathromycin). The lowest MIC90 (i.e. the concentration at which 90% of isolates were inhibited) was obtained for cefotaxime (≤0.015 µg/ml), and the highest MIC90 (512 µg/ml) was obtained for streptomycin. This study tested a large set of current field isolates and included the most common serovars (serovars 4 and 5). The results point to the suitability of the broth microdilution susceptibility testing method proposed previously for determining H. parasuis MIC values. In addition, the study provides a reliable overview of the susceptibility status of H. parasuis at present in Germany.


Asunto(s)
Antibacterianos/farmacología , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/efectos de los fármacos , Pruebas de Sensibilidad Microbiana/normas , Animales , Farmacorresistencia Bacteriana , Fluoroquinolonas/farmacología , Alemania/epidemiología , Infecciones por Haemophilus/epidemiología , Infecciones por Haemophilus/microbiología , Haemophilus parasuis/aislamiento & purificación , Pruebas de Sensibilidad Microbiana/métodos , Serogrupo , Porcinos/microbiología , Enfermedades de los Porcinos/epidemiología , Enfermedades de los Porcinos/microbiología , beta-Lactamas/farmacología
13.
Appl Environ Microbiol ; 84(11)2018 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-29572210

RESUMEN

An unknown member of the family Pasteurellaceae was repeatedly isolated from 20- to 24-week-old pigs with severe pulmonary lesions reared on the same farm in Victoria, Australia. The etiological diagnosis of the disease was inconclusive. The complete genome sequence analysis of one strain, 15-184, revealed some phylogenic proximity to Glaesserella (Haemophilus) parasuis, the cause of Glasser's disease. However, the sequences of the 16S rRNA and housekeeping genes, as well as the average nucleotide identity scores, differed from those of all other known species in the family Pasteurellaceae The protein content of 15-184 was composite, with 60% of coding sequences matching known G. parasuis products, while more than 20% had a closer relative in the genera Actinobacillus, Mannheimia, Pasteurella, and Bibersteinia Several putative virulence genes absent from G. parasuis but present in other Pasteurellaceae were also found, including the apxIII RTX toxin gene from Actinobacillus pleuropneumoniae, ABC transporters from Actinobacillus minor, and iron transporters from various species. Three prophages and one integrative conjugative element were present in the isolate. Horizontal gene transfers might explain the mosaic genomic structure and atypical metabolic and virulence characteristics of 15-184. This organism has not been assigned a taxonomic position in the family, but this study underlines the need for a large-scale epidemiological and clinical characterization of this novel pathogen in swine populations, as a genomic analysis suggests it could have a severe impact on pig health.IMPORTANCE Several species of Pasteurellaceae cause a range of significant diseases in pigs. A novel member of this family was recently isolated from Australian pigs suffering from severe respiratory infections. Comparative whole-genome analyses suggest that this bacterium represents a new species, which possesses a number of virulence genes horizontally acquired from a diverse range of other Pasteurellaceae While the possible contribution of other coinfecting noncultivable agents to the disease has not been ruled out in this study, the repertoire of virulence genes found in this organism may nevertheless explain some aspects of the associated pathology observed on the farm. The prevalence of this novel pathogen within pig populations is currently unknown. This finding is of particular importance for the pig industry, as this organism can have a serious impact on the health of these animals.


Asunto(s)
Transferencia de Gen Horizontal , Genoma Bacteriano , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/genética , Infecciones del Sistema Respiratorio/veterinaria , Factores de Virulencia/genética , Animales , Australia , Proteínas Bacterianas/genética , Infecciones por Haemophilus/microbiología , Haemophilus parasuis/aislamiento & purificación , Haemophilus parasuis/patogenicidad , Filogenia , ARN Ribosómico 16S/genética , Infecciones del Sistema Respiratorio/microbiología , Porcinos/microbiología , Enfermedades de los Porcinos/microbiología , Virulencia
14.
J Microbiol Methods ; 144: 67-72, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29128480

RESUMEN

Haemophilus parasuis infection is of considerable economic importance in the swine industry due to high morbidity and mortality in naive swine populations. Accurate detection and identification of the causative agent are difficult, yet necessary, for disease control. In this study, a simple and rapid method of cross-priming amplification (CPA) with a vertical flow (VF) visualization strip was established to detect H. parasuis. The reaction can specifically identify 15 serovar reference strains and 57 clinically isolated strains of H. parasuis, with a detection limit of 14CFU. The performance of the CPA-VF assay was evaluated and compared with that of species-specific PCR by testing 62 clinical culture-positive specimens of H. parasuis. The entire process, from specimen processing to analysis of the results, can be completed in 2h without a complicated apparatus. The convenience and speed of the CPA-VF assay in this study make it a suitable choice for epidemiological investigation and point-of-care testing (POCT) for H. parasuis infection.


Asunto(s)
Técnicas de Tipificación Bacteriana/métodos , Reactividad Cruzada , Haemophilus parasuis/aislamiento & purificación , Técnicas de Diagnóstico Molecular/métodos , Reacción en Cadena de la Polimerasa/métodos , Animales , Técnicas de Tipificación Bacteriana/instrumentación , Cartilla de ADN/genética , ADN Bacteriano/análisis , Infecciones por Haemophilus/diagnóstico , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/genética , Haemophilus parasuis/patogenicidad , Técnicas de Diagnóstico Molecular/instrumentación , Reacción en Cadena de la Polimerasa/instrumentación , Sensibilidad y Especificidad , Especificidad de la Especie , Porcinos , Enfermedades de los Porcinos/microbiología
15.
J Clin Microbiol ; 55(11): 3249-3257, 2017 11.
Artículo en Inglés | MEDLINE | ID: mdl-28878007

RESUMEN

The bacterium Haemophilus parasuis is the specific pathogenic cause of Glässer's disease in swine. Fifteen serotypes of H. parasuis have been reported. A method to serotype H. parasuis isolates accurately would help to prevent and control Glässer's disease outbreaks through appropriate vaccination and to understand the epidemiology in specific geographic areas. However, according to traditional serotyping, the rate of nontypeable (NT) strains is 10 to 40%, which gives low accuracy. In the present study, we developed a set of PCR assays that are able to identify all the currently known H. parasuis serotypes, with a detection limit of 5 CFU. This PCR method is particularly useful to distinguish serotype 5 from serotype 12. We then surveyed the serotype prevalence of H. parasuis isolates from southern China using both the traditional indirect hemagglutination (IHA) and current PCR methods. Of the 298 isolates tested, 228 (76.51%) and 281 (94.30%) were serotyped by the IHA and PCR tests, respectively, with a concordance rate of 80.87% (241/298). The most prevalent serotypes obtained by PCR were 4, 5, 12, 13, NT, and 2, and the most prevalent obtained by IHA were NT, 5, 4, 12, 13, and 2. In conclusion, the PCR assays developed in this study provide a rapid and specific method for the molecular serotyping of H. parasuis.


Asunto(s)
Infecciones por Haemophilus/microbiología , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/clasificación , Haemophilus parasuis/genética , Tipificación Molecular/métodos , Reacción en Cadena de la Polimerasa/métodos , Enfermedades de los Porcinos/microbiología , Animales , China/epidemiología , Genotipo , Infecciones por Haemophilus/epidemiología , Haemophilus parasuis/aislamiento & purificación , Prevalencia , Serogrupo , Porcinos , Enfermedades de los Porcinos/epidemiología
16.
PLoS One ; 12(9): e0185387, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28945819

RESUMEN

Pneumocystis carinii f. sp. suis (PCS) nucleic acid and antibody profiles on two Austrian-farrow-to-finish farms were investigated. Furthermore, associations with other respiratory pathogens were evaluated. Respiratory specimen and sera from pigs of five age classes between the 1st week and the 3rd month of life as well as samples from sows were analyzed. On Farm A, PCS infection occurred early in life. The suckling piglets were already infected in the 1st week of life and the pigs remained positive until the 3rd month of life. On Farm B, pigs were infected later, between 3 and 4 months of age. The maximum PCS nucleic acid load on Farm A was 8.3 log10 genome copies/mL BALF, whereas on Farm B the PCS burden was significantly lower, with 4.0 log10 genome copies/mL BALF. Anti-PCS antibodies were detected in sows, as maternal antibodies in suckling piglets and as an immunological reaction to infection. On both farms, PCS infection was accompanied by several co-infections. On Farm A, there were concurrent infections with PRRSV, a virulent strain of Haemophilus parasuis, and Mycoplasma hyopneumoniae. On Farm B, PCS was accompanied by infections with swine influenza virus, Mycoplasma hyopneumoniae, and a non-virulent strain of Haemophilus parasuis. The results clearly show that the PCS profiles can vary between farms. Younger pigs may be more susceptible as they had higher PCS burdens. It is possible that PCS may contribute to a respiratory disease in pigs and further investigation of its potential role is warranted.


Asunto(s)
Pneumocystis carinii/patogenicidad , Neumonía por Pneumocystis/veterinaria , Enfermedades de los Porcinos/microbiología , Factores de Edad , Animales , Animales Recién Nacidos , Anticuerpos Antifúngicos/análisis , Anticuerpos Antifúngicos/sangre , Austria , Coinfección/inmunología , Coinfección/microbiología , Coinfección/veterinaria , Estudios Transversales , ADN Bacteriano/análisis , ADN Bacteriano/sangre , ADN Bacteriano/genética , ADN de Hongos/análisis , ADN de Hongos/sangre , ADN de Hongos/genética , ADN Viral/análisis , ADN Viral/sangre , ADN Viral/genética , Femenino , Infecciones por Haemophilus/inmunología , Infecciones por Haemophilus/microbiología , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/genética , Haemophilus parasuis/aislamiento & purificación , Masculino , Infecciones por Orthomyxoviridae/inmunología , Infecciones por Orthomyxoviridae/microbiología , Infecciones por Orthomyxoviridae/veterinaria , Pneumocystis carinii/genética , Pneumocystis carinii/inmunología , Neumonía Porcina por Mycoplasma/inmunología , Neumonía Porcina por Mycoplasma/microbiología , Neumonía por Pneumocystis/inmunología , Neumonía por Pneumocystis/microbiología , Síndrome Respiratorio y de la Reproducción Porcina/inmunología , Síndrome Respiratorio y de la Reproducción Porcina/microbiología , Síndrome Respiratorio y de la Reproducción Porcina/virología , Sus scrofa , Porcinos , Enfermedades de los Porcinos/inmunología
19.
J Clin Microbiol ; 55(9): 2617-2628, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28615466

RESUMEN

Haemophilus parasuis is a diverse bacterial species that is found in the upper respiratory tracts of pigs and can also cause Glässer's disease and pneumonia. A previous pangenome study of H. parasuis identified 48 genes that were associated with clinical disease. Here, we describe the development of a generalized linear model (termed a pathotyping model) to predict the potential virulence of isolates of H. parasuis based on a subset of 10 genes from the pangenome. A multiplex PCR (mPCR) was constructed based on these genes, the results of which were entered into the pathotyping model to yield a prediction of virulence. This new diagnostic mPCR was tested on 143 field isolates of H. parasuis that had previously been whole-genome sequenced and a further 84 isolates from the United Kingdom from cases of H. parasuis-related disease in pigs collected between 2013 and 2014. The combination of the mPCR and the pathotyping model predicted the virulence of an isolate with 78% accuracy for the original isolate collection and 90% for the additional isolate collection, providing an overall accuracy of 83% (81% sensitivity and 93% specificity) compared with that of the "current standard" of detailed clinical metadata. This new pathotyping assay has the potential to aid surveillance and disease control in addition to serotyping data.


Asunto(s)
Infecciones por Haemophilus/diagnóstico , Infecciones por Haemophilus/veterinaria , Haemophilus parasuis/genética , Haemophilus parasuis/patogenicidad , Técnicas de Diagnóstico Molecular/métodos , Enfermedades de los Porcinos/diagnóstico , Animales , Genoma/genética , Infecciones por Haemophilus/microbiología , Haemophilus parasuis/aislamiento & purificación , Reacción en Cadena de la Polimerasa Multiplex , Porcinos , Enfermedades de los Porcinos/microbiología , Virulencia/genética
20.
Arq. bras. med. vet. zootec ; 69(1): 15-21, jan.-fev. 2017. tab, graf
Artículo en Inglés | LILACS, VETINDEX | ID: biblio-834063

RESUMEN

Glässer's disease is an emergent bacterial disease that affects swine husbandries worldwide causing important economic losses. The aetiological agent, Haemophilus parasuis, is currently divided in fifteen serovars but an increasing number of non-typeable serovars have been reported. Indirect hemagglutination (IHA) is indicated as a serotyping method for H. parasuis. In the present study, we describe an additional step that aims to work around a possible obstacle in the original protocol that may compromise the outcome of this assay. We observed that the choice of anticoagulant for blood collection influences and/or impairs spontaneous adsorption of H. parasuis antigens on sheep red blood cells (SRBCs). However, regardless of the anticoagulant used, chemical treatment of SRBCs with tannic acid induces a stable antigen adsorption (sensitization step). The addition of 1% BSA to SRBCs washing buffer and to antisera dilution augments IHA specificity. Tannic acid treated SRBCs combined with thermo-resistant H. parasuis antigens increases the assay resolution. Thus, our results demonstrate an improvement in the technique of H. parasuis serotyping that will prove valuable to understand Glässer's disease epidemiology and to better characterize serovars involved in outbreaks.(AU)


A Doença de Glässer é uma doença bacteriana emergente que afeta a produção de suínos em todo o mundo e causa importantes perdas econômicas. O agente etiológico, Haemophilus parasuis, é atualmente dividido em quinze sorovares; no entanto, um número crescente de cepas não tipificáveis tem sido relatado. O teste de hemaglutinação indireta (IHA) tem sido utilizado para a sorotipificação de H. parasuis. Neste estudo, descrevemos uma alteração no protocolo original de IHA e que supera uma limitação específica que pode comprometer o uso geral deste ensaio. Descobrimos que o tipo de anticoagulante utilizado para coletar os eritrócitos ovinos (SRBCs) pode comprometer a adsorção espontânea dos antígenos do H. parasuis. Por outro lado, o tratamento químico dos SRBCs com ácido tânico promove uma adsorção antigênica estável (passo de sensibilização) e independente do anticoagulante utilizado. O uso de 1% de BSA durante as lavagens dos SRBCs e na diluição dos antissoros incrementa a especificidade da IHA e, a combinação dos SRBCs tratados quimicamente com antígenos de H. parasuis termo-resistentes aumentam a resolução da IHA. Nossos resultados destacam uma melhoria na principal técnica de sorotipificação de H. parasuis, que auxiliará diretamente no entendimento da epidemiologia da Doença de Glässer e na caracterização dos sorovares envolvidos em surtos da doença.(AU)


Asunto(s)
Animales , Infecciones por Haemophilus/diagnóstico , Haemophilus parasuis/aislamiento & purificación , Pruebas de Hemaglutinación/métodos , Pruebas de Hemaglutinación/veterinaria , Porcinos/virología , Taninos
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