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1.
PLoS One ; 15(4): e0231759, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32330150

RESUMEN

Ruminant methane production is a significant energy loss to the animal and major contributor to global greenhouse gas emissions. However, it also seems necessary for effective rumen function, so studies of anti-methanogenic treatments must also consider implications for feed efficiency. Between-animal variation in feed efficiency represents an alternative approach to reducing overall methane emissions intensity. Here we assess the effects of dietary additives designed to reduce methane emissions on the rumen microbiota, and explore relationships with feed efficiency within dietary treatment groups. Seventy-nine finishing steers were offered one of four diets (a forage/concentrate mixture supplemented with nitrate (NIT), lipid (MDDG) or a combination (COMB) compared to the control (CTL)). Rumen fluid samples were collected at the end of a 56 d feed efficiency measurement period. DNA was extracted, multiplexed 16s rRNA libraries sequenced (Illumina MiSeq) and taxonomic profiles were generated. The effect of dietary treatments and feed efficiency (within treatment groups) was conducted both overall (using non-metric multidimensional scaling (NMDS) and diversity indexes) and for individual taxa. Diet affected overall microbial populations but no overall difference in beta-diversity was observed. The relative abundance of Methanobacteriales (Methanobrevibacter and Methanosphaera) increased in MDDG relative to CTL, whilst VadinCA11 (Methanomassiliicoccales) was decreased. Trimethylamine precursors from rapeseed meal (only present in CTL) probably explain the differences in relative abundance of Methanomassiliicoccales. There were no differences in Shannon indexes between nominal low or high feed efficiency groups (expressed as feed conversion ratio or residual feed intake) within treatment groups. Relationships between the relative abundance of individual taxa and feed efficiency measures were observed, but were not consistent across dietary treatments.


Asunto(s)
Alimentación Animal , Crianza de Animales Domésticos/métodos , Microbioma Gastrointestinal/fisiología , Efecto Invernadero/prevención & control , Rumen/microbiología , Animales , Bovinos , ADN Bacteriano/aislamiento & purificación , Grasas de la Dieta/administración & dosificación , Suplementos Dietéticos , Gases de Efecto Invernadero/metabolismo , Masculino , Metano/metabolismo , Methanobacteriaceae/genética , Methanobacteriaceae/aislamiento & purificación , Methanobacteriaceae/metabolismo , Methanobacteriales/genética , Methanobacteriales/aislamiento & purificación , Methanobacteriales/metabolismo , Methanobrevibacter/genética , Methanobrevibacter/aislamiento & purificación , Methanobrevibacter/metabolismo , ARN Ribosómico 16S/genética , Rumen/efectos de los fármacos , Escocia
2.
Appl Environ Microbiol ; 85(20)2019 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-31420342

RESUMEN

Iron sheet piles are widely used in flood protection, dike construction, and river bank reinforcement. Their corrosion leads to gradual deterioration and often makes replacement necessary. Natural deposit layers on these sheet piles can prevent degradation and significantly increase their life span. However, little is known about the mechanisms of natural protective layer formation. Here, we studied the microbially diverse populations of corrosion-protective deposit layers on iron sheet piles at the Gouderak pumping station in Zuid-Holland, the Netherlands. Deposit layers, surrounding sediment and top sediment samples were analyzed for soil physicochemical parameters, microbially diverse populations, and metabolic potential. Methanogens appeared to be enriched 18-fold in the deposit layers. After sequencing, metagenome assembly and binning, we obtained four nearly complete draft genomes of microorganisms (Methanobacteriales, two Coriobacteriales, and Syntrophobacterales) that were highly enriched in the deposit layers, strongly indicating a potential role in corrosion protection. Coriobacteriales and Syntrophobacterales could be part of a microbial food web degrading organic matter to supply methanogenic substrates. Methane-producing Methanobacteriales could metabolize iron, which may initially lead to mild corrosion but potentially stimulates the formation of a carbonate-rich protective deposit layer in the long term. In addition, Methanobacteriales and Coriobacteriales have the potential to interact with metal surfaces via direct interspecies or extracellular electron transfer. In conclusion, our study provides valuable insights into microbial populations involved in iron corrosion protection and potentially enables the development of novel strategies for in situ screening of iron sheet piles in order to reduce risks and develop more sustainable replacement practices.IMPORTANCE Iron sheet piles are widely used to reinforce dikes and river banks. Damage due to iron corrosion poses a significant safety risk and has significant economic impact. Different groups of microorganisms are known to either stimulate or inhibit the corrosion process. Recently, natural corrosion-protective deposit layers were found on sheet piles. Analyses of the microbial composition indicated a potential role for methane-producing archaea. However, the full metabolic potential of the microbial communities within these protective layers has not been determined. The significance of this work lies in the reconstruction of the microbial food web of natural corrosion-protective layers isolated from noncorroding metal sheet piles. With this work, we provide insights into the microbiological mechanisms that potentially promote corrosion protection in freshwater ecosystems. Our findings could support the development of screening protocols to assess the integrity of iron sheet piles to decide whether replacement is required.


Asunto(s)
Deltaproteobacteria/metabolismo , Hierro/metabolismo , Methanobacteriales/metabolismo , Corrosión , Países Bajos
3.
Curr Issues Mol Biol ; 33: 1-22, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31166183

RESUMEN

Aerobic methanotrophs are an intriguing group of microbes with the singular ability to consume methane as their sole source of carbon and energy. As such, methanotrophs are receiving increased attention to control methane emissions to limit future climate change. Methanotrophs have a wide range of other applications, including pollutant remediation and methane valorization (e.g. conversion of methane to protein, bioplastics, and biodiesel amongst other products). Methanotrophs also produce a novel copper-binding compound, methanobactin, that has significant potential for the treatment of copper-related human pathologies. Here we provide an overview of aerobic methanotrophy, describe current and future applications of these unique microbes, as well as discuss various strategies one can consider to better realize the opportunities these microbes present.


Asunto(s)
Tecnología Biomédica/métodos , Metabolismo Energético/fisiología , Restauración y Remediación Ambiental/métodos , Industrias/métodos , Metano/metabolismo , Methanobacteriales/metabolismo , Bacterias/metabolismo , Hongos/metabolismo , Regulación Bacteriana de la Expresión Génica , Imidazoles/metabolismo , Methanobacteriales/clasificación , Methanobacteriales/fisiología , Oligopéptidos/metabolismo
4.
Curr Issues Mol Biol ; 33: 23-56, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31166184

RESUMEN

Microorganisms are important players in the global methane cycle. Anaerobic methanogenic archaea are largely responsible for methane production, while aerobic methanotrophic bacteria, as well as anaerobic methanotrophic bacteria and archaea, are involved in methane oxidation. In anoxic wetland soils, methanogens produce methane, while methanotrophs act as a filter and reduce methane emissions. In the predominantly oxic upland soils, aerobic methanotrophs oxidize atmospheric methane. This review gives an overview of the diversity of methanogenic and methanotrophic microorganisms, highlights recent discoveries and provides information concerning their occurrence in soils. Recent findings indicate that the methanogenic and methanotrophic lifestyles are more widespread in microorganisms than previously thought, and that the metabolic versatility of some methane-cycling organisms is broader than known from well characterized cultivated organisms. It also turned out that the control of methanogenic and methanotrophic bacteria by oxygen is more complex than previously thought. The implications this finding may have for the life of these microorganisms in soils and on soil methane fluxes is discussed.


Asunto(s)
Biodiversidad , Metano/metabolismo , Microbiota/fisiología , Oxígeno/fisiología , Microbiología del Suelo , Archaea/clasificación , Archaea/metabolismo , Methanobacteriales/clasificación , Methanobacteriales/metabolismo , Oxígeno/metabolismo , Suelo/química
5.
Curr Issues Mol Biol ; 33: 57-84, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31166185

RESUMEN

Methanotrophic microorganisms utilize methane as an electron donor and a carbon source. To date, the capacity to oxidize methane is restricted to microorganisms from three bacterial and one archaeal phyla. Most of our knowledge of methanotrophic metabolism has been obtained using highly enriched or pure cultures grown in the laboratory. However, many methanotrophs currently evade cultivation, thus metagenomics provides a complementary approach for gaining insight into currently unisolated microorganisms. Here we synthesize the studies using metagenomics to glean information about methanotrophs. We complement this summary with an analysis of methanotroph marker genes from 235 publically available metagenomic datasets. We analyze the phylogenetic and environmental distribution of methanotrophs sampled by metagenomics. We also highlight metabolic insights that methanotroph genomes assembled from metagenomes are illuminating. In summary, metagenomics has increased methanotrophic foliage within the tree of life, as well as provided new insights into methanotroph metabolism, which collectively can guide new cultivation efforts. Lastly, given the importance of methanotrophs for biotechnological applications and their capacity to filter greenhouse gases from a variety of ecosystems, metagenomics will continue to be an important component in the arsenal of tools needed for understanding methanotroph diversity and metabolism in both engineered and natural systems.


Asunto(s)
Biodiversidad , Metabolismo Energético/genética , Metagenoma , Metano/metabolismo , Microbiota/genética , Microbiología del Suelo , Archaea/clasificación , Archaea/genética , Archaea/metabolismo , Metagenoma/genética , Metagenómica/métodos , Methanobacteriales/clasificación , Methanobacteriales/genética , Methanobacteriales/metabolismo , Filogenia
6.
Microb Ecol ; 75(3): 811-818, 2018 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29018917

RESUMEN

The red macroalga Asparagopsis taxiformis has been shown to significantly decrease methane production by rumen microbial communities. This has been attributed to the bioaccumulation of halogenated methane analogues produced as algal secondary metabolites. The objective of this study was to evaluate the impact of A. taxiformis supplementation on the relative abundance of methanogens and microbial community structure during in vitro batch fermentation. Addition of A. taxiformis (2% organic matter) or the halogenated methane analogue bromoform (5 µM) reduced methane production by over 99% compared to a basal substrate-only control. Quantitative PCR confirmed that the decrease in methane production was correlated with a decrease in the relative abundance of methanogens. High-throughput 16S ribosomal RNA gene amplicon sequencing showed that both treatments reduced the abundance of the three main orders of methanogens present in ruminants (Methanobacteriales, Methanomassiliicoccales and Methanomicrobiales). Shifts in bacterial community structure due to the addition of A. taxiformis and 5 µM bromoform were similar and concomitant with increases in hydrogen concentration in the headspace of the fermenters. With high potency and broad-spectrum activity against rumen methanogens, A. taxiformis represents a promising natural strategy for reducing enteric methane emissions from ruminant livestock.


Asunto(s)
Metano/análogos & derivados , Microbiota/efectos de los fármacos , Rhodophyta/metabolismo , Rumen/microbiología , Algas Marinas/metabolismo , Animales , Bacterias/clasificación , Bacterias/efectos de los fármacos , Bacterias/metabolismo , ADN Bacteriano/genética , Fermentación , Halogenación , Hidrógeno/metabolismo , Técnicas In Vitro , Ganado/microbiología , Metano/metabolismo , Methanobacteriales/efectos de los fármacos , Methanobacteriales/metabolismo , Methanomicrobiales/efectos de los fármacos , Methanomicrobiales/metabolismo , Microbiota/genética , ARN Ribosómico 16S/genética , Trihalometanos/farmacología
7.
PLoS One ; 12(11): e0187858, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29117259

RESUMEN

Dairy cows experience dramatic changes in host physiology from gestation to lactation period and dietary switch from high-forage prepartum diet to high-concentrate postpartum diet over the transition period (parturition +/- three weeks). Understanding the community structure and activity of the rumen microbiota and its associative patterns over the transition period may provide insight for e.g. improving animal health and production. In the present study, rumen samples from ten primiparous Holstein dairy cows were collected over seven weeks spanning the transition period. Total RNA was extracted from the rumen samples and cDNA thereof was subsequently used for characterizing the metabolically active bacterial (16S rRNA transcript amplicon sequencing) and archaeal (qPCR, T-RFLP and mcrA and 16S rRNA transcript amplicon sequencing) communities. The metabolically active bacterial community was dominated by three phyla, showing significant changes in relative abundance range over the transition period: Firmicutes (from prepartum 57% to postpartum 35%), Bacteroidetes (from prepartum 22% to postpartum 18%) and Proteobacteria (from prepartum 7% to postpartum 32%). For the archaea, qPCR analysis of 16S rRNA transcript number, revealed a significant prepartum to postpartum increase in Methanobacteriales, in accordance with an observed increase (from prepartum 80% to postpartum 89%) in relative abundance of 16S rRNA transcript amplicons allocated to this order. On the other hand, a significant prepartum to postpartum decrease (from 15% to 2%) was observed in relative abundance of Methanomassiliicoccales 16S rRNA transcripts. In contrast to qPCR analysis of the 16S rRNA transcripts, quantification of mcrA transcripts revealed no change in total abundance of metabolically active methanogens over the transition period. According to T-RFLP analysis of the mcrA transcripts, two Methanobacteriales genera, Methanobrevibacter and Methanosphaera (represented by the T-RFs 39 and 267 bp), represented more than 70% of the metabolically active methanogens, showing no significant changes over the transition period; minor T-RFs, likely to represent members of the order Methanomassiliicoccales and with a relative abundance below 5% in total, decreased significantly over the transition period. In accordance with the T-RFLP analysis, the mcrA transcript amplicon sequencing revealed Methanobacteriales to cover 99% of the total reads, dominated by the genera Methanobrevibacter (75%) and Methanosphaera (24%), whereas the Methanomassiliicoccales order covered only 0.2% of the total reads. In conclusion, the present study showed that the structure of the metabolically active bacterial and archaeal rumen communities changed over the transition period, likely in response to the dramatic changes in physiology and nutritional factors like dry matter intake and feed composition. It should be noted however that for the methanogens, the observed community changes were influenced by the analyzed gene (mcrA or 16S rRNA).


Asunto(s)
Bacteroidetes/metabolismo , Firmicutes/metabolismo , Microbioma Gastrointestinal/genética , Methanobacteriales/metabolismo , Proteobacteria/metabolismo , Rumen/microbiología , Alimentación Animal/análisis , Bienestar del Animal , Animales , Bacteroidetes/clasificación , Bacteroidetes/genética , Bacteroidetes/aislamiento & purificación , Bovinos , Dieta , Femenino , Firmicutes/clasificación , Firmicutes/genética , Firmicutes/aislamiento & purificación , Lactancia/fisiología , Methanobacteriales/clasificación , Methanobacteriales/genética , Methanobacteriales/aislamiento & purificación , Oxidorreductasas/genética , Parto/fisiología , Filogenia , Polimorfismo de Longitud del Fragmento de Restricción , Periodo Posparto/fisiología , Embarazo , Análisis de Componente Principal , Proteobacteria/clasificación , Proteobacteria/genética , Proteobacteria/aislamiento & purificación , ARN Ribosómico 16S/genética
8.
Bioresour Technol ; 207: 353-60, 2016 May.
Artículo en Inglés | MEDLINE | ID: mdl-26897414

RESUMEN

Several 60L dry batch anaerobic digestion (AD) reactors were implemented with or without liquid reserve on cattle manure. The immersed part modulation of cattle manure increased the methane flow of about 13%. The quantitative real time PCR and the optimized DNA extraction were implemented and validated to characterize and quantify the methanogen dynamic in dry batch AD process. Final quantities of methanogens converged toward the same level in several inocula at the end of AD. Methanogen dynamic was shown by dominance of Methanosarcinaceae for acetotrophic methanogens and Methanobacteriales for the hydrogenotrophic methanogens. Overall, methanogens populations were stabilized in liquid phase, except Methanosaetaceae. Solid phase was colonized by Methanomicrobiales and Methanosarcinaceae populations giving a support to biofilm development. The methane increase could be explained by a raise of Methanosarcinaceae population in presence of a total contact between solid and liquid phases. Methanosarcinaceae was a bio-indicator of the methane production.


Asunto(s)
Euryarchaeota/metabolismo , Metano/biosíntesis , Anaerobiosis , Animales , Reactores Biológicos , Bovinos , Euryarchaeota/genética , Estiércol , Methanobacteriales/genética , Methanobacteriales/metabolismo , Methanomicrobiales/genética , Methanomicrobiales/metabolismo , Methanosarcinales/genética , Methanosarcinales/metabolismo , ARN Ribosómico 16S/genética , Administración de Residuos/métodos
9.
FEMS Microbiol Ecol ; 92(2)2016 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-26712349

RESUMEN

Although methanogens were recently discovered to occur in aerated soils, alpine regions have not been extensively studied for their presence so far. Here, the abundance of archaea and the methanogenic guilds Methanosarcinales, Methanococcales, Methanobacteriales, Methanomicrobiales and Methanocella spp. was studied at 16 coniferous forest and 14 grassland sites located at the montane and subalpine belts of the Northern Limestone Alps (calcareous) and the Austrian Central Alps (siliceous) using quantitative real-time PCR. Abundance of archaea, methanogens and the methanogenic potentials were significantly higher in grasslands than in forests. Furthermore, methanogenic potentials of calcareous soils were higher due to pH. Methanococcales, Methanomicrobiales and Methanocella spp. were detected in all collected samples, which indicates that they are autochthonous, while Methanobacteriales were absent from 4 out of 16 forest soils. Methanosarcinales were absent from 10 out of 16 forest soils and 2 out of 14 grassland soils. Nevertheless, together with Methanococcales they represented the majority of the 16S rRNA gene copies quantified from the grassland soils. Contrarily, forest soils were clearly dominated by Methanococcales. Our results indicate a higher diversity of methanogens in well-aerated soils than previously believed and that pH mainly influences their abundances and activities.


Asunto(s)
Metano/metabolismo , Methanobacteriales/metabolismo , Methanococcales/metabolismo , Methanomicrobiales/metabolismo , Methanosarcinales/metabolismo , Bosques , Pradera , Methanobacteriales/clasificación , Methanobacteriales/genética , Methanococcales/clasificación , Methanococcales/genética , Methanomicrobiales/clasificación , Methanomicrobiales/genética , Methanosarcinales/clasificación , Methanosarcinales/genética , Filogenia , ARN Ribosómico 16S/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Suelo , Microbiología del Suelo
10.
Int J Mol Sci ; 16(10): 23210-26, 2015 Sep 25.
Artículo en Inglés | MEDLINE | ID: mdl-26404240

RESUMEN

The anaerobic digestion of filter cake and its co-digestion with bagasse, and the effect of gradual increase of the organic loading rate (OLR) from start-up to overload were investigated. Understanding the influence of environmental and technical parameters on the development of particular methanogenic pathway in the biogas process was an important aim for the prediction and prevention of process failure. The rapid accumulation of volatile organic acids at high OLR of 3.0 to 4.0 gvs·L⁻¹·day⁻¹ indicated strong process inhibition. Methanogenic community dynamics of the reactors was monitored by stable isotope composition of biogas and molecular biological analysis. A potential shift toward the aceticlastic methanogenesis was observed along with the OLR increase under stable reactor operating conditions. Reactor overloading and process failure were indicated by the tendency to return to a predominance of hydrogenotrophic methanogenesis with rising abundances of the orders Methanobacteriales and Methanomicrobiales and drop of the genus Methanosarcina abundance.


Asunto(s)
Eliminación de Residuos/métodos , Saccharum , Residuos , Anaerobiosis , Reactores Biológicos , Methanobacteriales/metabolismo , Methanosarcina/metabolismo
11.
Bioresour Technol ; 189: 370-378, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25913884

RESUMEN

Low temperature (<20 °C) limits bio-methanation of sewage. Literature shows that hydrogenotrophic methanogens can adapt themselves to low temperature and methanol is a preferred substrate by methanogens in cold habitats. The study hypothesizes that methanol can induce the growth of low-temperature resilient, methanol utilizing, hydrogenotrophs in UASB reactor. The hypothesis was tested in field conditions to evaluate the impact of seasonal temperature variations on methane yield in the presence and absence of methanol. Results show that 0.04% (v/v) methanol increased methane up to 15 times and its effect was more pronounced at lower temperatures. The qPCR analysis showed the presence of Methanobacteriales along with Methanosetaceae in large numbers. This indicates methanol induced the growth of both the hydrogenotrophic and acetoclastic groups through direct and indirect routes, respectively. This study thus demonstrated that methanol can impart resistance in methanogenic biomass to low temperature and can improve performance of UASB reactor.


Asunto(s)
Frío , Metano/biosíntesis , Methanobacteriales/metabolismo , Metanol/farmacología , Aguas Residuales/microbiología , Técnicas de Cultivo Celular por Lotes , Análisis de la Demanda Biológica de Oxígeno , Reactores Biológicos/microbiología , Methanobacteriales/efectos de los fármacos , Modelos Teóricos , Reacción en Cadena en Tiempo Real de la Polimerasa , Aguas del Alcantarillado/microbiología , Factores de Tiempo
12.
Biosci Biotechnol Biochem ; 79(8): 1378-83, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25744534

RESUMEN

In this study, dual-cylindrical anaerobic digesters were designed and built on the pilot plant scale for the improvement of anaerobic digestion efficiency. The removal efficiency of organics, biogas productivity, yield, and microbial communities was evaluated as performance parameters of the digester. During the stable operational period in the continuous mode, the removal efficiencies of chemical oxygen demand and total solids were 74.1 and 65.1%, respectively. Biogas productivities of 63.9 m(3)/m(3)-FWW and 1.3 m(3)/kg-VSremoved were measured. The hydrogenotrophic methanogen orders, Methanomicrobiales and Methanobacteriales, were predominant over the aceticlastic methanogen order, Methanosarcinaceae, probably due to the tolerance of the hydrogenotrophs to environmental perturbation in the field and their faster growth rate compared with that of the aceticlastics.


Asunto(s)
Biodegradación Ambiental , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Aguas Residuales , Anaerobiosis , Biocombustibles , Reactores Biológicos , Alimentos , Humanos , Metano/metabolismo , Aguas del Alcantarillado
13.
FEMS Microbiol Ecol ; 91(2): 1-10, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25764549

RESUMEN

Tank bromeliads are highly abundant epiphytes in neotropical forests and form a unique canopy wetland ecosystem which is involved in the global methane cycle. Although the tropical climate is characterized by high annual precipitation, the plants can face periods of restricted water. Thus, we hypothesized that water is an important controller of the archaeal community composition and the pathway of methane formation in tank bromeliads. Greenhouse experiments were established to investigate the resident and active archaeal community targeting the 16S rDNA and 16S rRNA in the tank slurry of bromeliads at three different moisture levels. Archaeal community composition and abundance were determined using terminal restriction fragment length polymorphism and quantitative PCR. Release of methane and its stable carbon isotopic signature were determined in a further incubation experiment under two moisture levels. The relative abundance of aceticlastic Methanosaetaceae increased up to 34% and that of hydrogenotrophic Methanobacteriales decreased by more than half with decreasing moisture. Furthermore, at low moisture levels, methane production was up to 100-fold lower (≤0.1-1.1 nmol gdw(-1) d(-1)) than under high moisture levels (10-15 nmol gdw(-1) d(-1)). The rapid response of the archaeal community indicates that the pathway of methane formation in bromeliad tanks may indeed be strongly susceptible to periods of drought in neotropical forest canopies.


Asunto(s)
Metano/metabolismo , Methanobacteriales/metabolismo , Methanosarcinales/metabolismo , Humedales , Carbono/metabolismo , Bosques , Metano/biosíntesis , Methanobacteriales/genética , Methanosarcinales/genética , Polimorfismo de Longitud del Fragmento de Restricción , ARN Ribosómico 16S/genética , Clima Tropical , Agua
14.
Anaerobe ; 29: 34-43, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24384307

RESUMEN

Anaerobic fungi occupy the rumen and digestive tract of herbivores, where they play an important role in enzymatic digestion of lignocellulosic and cellulosic substrates, i.e. organic material that their hosts are unable to decompose on their own. In this study we isolated anaerobic fungi from a typical alpine herbivore, the Alpine ibex (C. ibex). Three fungal strains, either as pure culture (ST2) or syntrophic co-culture with methanogens (ST3, ST4) were successfully obtained and morphologically characterised by different microscopy- and staining-techniques and by rDNA ITS gene sequencing. The isolated fungi were identified as Neocallimastix frontalis (ST2) and Caecomyces communis (ST3 and ST4). We introduce a novel field of application for lactofuchsin-staining, combined with confocal laser scanning microscopy. This approach proved as an effective method to visualize fungal structures, especially in the presence of plant biomass, generally exhibiting high autofluorescence. Moreover, we could demonstrate that fungal morphology is subject to changes depending on the carbon source used for cultivation. Oxygen tolerance was confirmed for both, C. communis-cultures for up to three, and for the N. frontalis-isolate for up to 12 h, respectively. With PCR, FISH and an oligonucleotide microarray we found associated methanogens (mainly Methanobacteriales) for C. communis, but not for N. frontalis.


Asunto(s)
ADN de Archaea/genética , ADN de Hongos/genética , Metano/biosíntesis , Methanobacteriales/metabolismo , Neocallimastigomycota/metabolismo , Anaerobiosis , Animales , ADN Espaciador Ribosómico/genética , Heces/microbiología , Fermentación , Cabras/microbiología , Methanobacteriales/clasificación , Methanobacteriales/genética , Methanobacteriales/aislamiento & purificación , Microscopía Confocal , Neocallimastigomycota/clasificación , Neocallimastigomycota/genética , Neocallimastigomycota/aislamiento & purificación , Filogenia , Reacción en Cadena de la Polimerasa , Rumen/microbiología , Análisis de Secuencia de ADN , Simbiosis/fisiología
15.
Bioresour Technol ; 155: 342-51, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24463413

RESUMEN

The two-phase anaerobic co-digestion of cassava dregs (CD) with pig manure (PM) was evaluated using four sequencing batch reactors (SBRs) and a continuously stirred tank reactor (CSTR). The effect of seven different PM to CD volatile solid ratios (10:0, 8:2, 6:4, 5:5, 4:6, 2:8 and 0:10) on the acidification phase was investigated. Results indicated the concentrations of soluble chemical oxygen demand, NH4-N and volatile fatty acids increased substantially at seven ratios. Co-acidification of PM and CD performed well. Methanogenic fermentation of the acidification products at seven ratios was steady in CSTR. The highest methane yield and VS removal of 0.352m(3)/kg VSadded and 68.5% were achieved at PM:CD (4:6). The microbial population in CSTR was analyzed using molecular methods. Findings revealed that bacteria such as Firmicutes and Bacteroidetes, archaea such as Methanobacteriales and Methanomicrobiales were advantageous populations. Co-digestion of PM and CD supported higher quantity and diversity of methanogens.


Asunto(s)
Bacterias Anaerobias/metabolismo , Reactores Biológicos , Manihot/metabolismo , Estiércol/análisis , Amoníaco/metabolismo , Animales , Bacteroidetes/genética , Bacteroidetes/metabolismo , Secuencia de Bases , Análisis de la Demanda Biológica de Oxígeno , Análisis por Conglomerados , Biología Computacional , Cartilla de ADN/genética , Electroforesis en Gel de Gradiente Desnaturalizante , Ácidos Grasos Volátiles/metabolismo , Bacterias Grampositivas/genética , Bacterias Grampositivas/metabolismo , Concentración de Iones de Hidrógeno , Manihot/química , Metano/biosíntesis , Methanobacteriales/genética , Methanobacteriales/metabolismo , Methanomicrobiales/genética , Methanomicrobiales/metabolismo , Datos de Secuencia Molecular , Filogenia , Reacción en Cadena de la Polimerasa , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Porcinos
16.
Archaea ; 2013: 346171, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24089597

RESUMEN

The feasibility of anaerobic digestion of dairy wastewater at 10°C was investigated in a high height : diameter ratio EGSB reactor. Stable performance was observed at an applied organic loading rate (OLR) of 0.5-2 kg COD m(-3) d(-1) with chemical oxygen demand (COD) removal efficiencies above 85%. When applied OLR increased to values above 2 kg COD m(-3) d(-1), biotreatment efficiency deteriorated, with methanogenesis being the rate-limiting step. The bioreactor recovered quickly (3 days) after reduction of the OLR. qPCR results showed a reduction in the abundance of hydrogenotrophic methanogenic Methanomicrobiales and Methanobacteriales throughout the steady state period followed by a sharp increase in their numbers (111-fold) after the load shock. Specific methanogenic activity and maximum substrate utilising rate (A(max)) of the biomass at the end of trial indicated increased activity and preference towards hydrogenotrophic methanogenesis, which correlated well with the increased abundance of hydrogenotrophic methanogens. Acetoclastic Methanosaeta spp. remained at stable levels throughout the trial. However, increased apparent half-saturation constant (K(m)) at the end of the trial indicated a decrease in the specific substrate affinity for acetate of the sludge, suggesting that Methanosaeta spp., which have high substrate affinity, started to be outcompeted in the reactor.


Asunto(s)
Reactores Biológicos/microbiología , Metano/biosíntesis , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Aguas Residuales/microbiología , Anaerobiosis , Bacteroidetes/genética , Bacteroidetes/aislamiento & purificación , Biomasa , Industria Lechera , Oxígeno/química , Dinámica Poblacional , Proteobacteria/genética , Proteobacteria/aislamiento & purificación , ARN Ribosómico 16S/genética , Spirochaetales/genética , Spirochaetales/aislamiento & purificación , Aguas Residuales/química
17.
FEMS Microbiol Ecol ; 83(1): 38-48, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22809020

RESUMEN

Methanogenesis from acetate (aceticlastic methanogenesis or syntrophic acetate oxidation (SAO) coupled with hydrogenotrophic methanogenesis) is the most important step for the biogas process. The major environmental factors influencing methanogenesis are volatile fatty acids, ammonia, pH, and temperature. In our study, the effect of acetate and ammonia concentration on the methanogenic pathway from acetate and on the methanogenic communities was elucidated in two experiments: one where inocula were gradually exposed to increasing concentrations of acetate or ammonia, and another with direct exposure to different ammonia concentrations. The methanogenic pathway was determined by following the production of (14) CH(4) and (14) CO(2) from acetate labeled in the methyl group (C-2). Microbial communities' composition was determined by fluorescence in situ hybridization. Upon acclimatization to acetate and ammonia, thermophilic cultures clearly shifted their acetate bioconversion pathway from SAO with subsequent hydrogenotrophic methanogenesis (mediated by Methanobacteriales spp. and/or Methanomicrobiales spp.) to aceticlastic methanogenesis (mediated by Methanosarcinaceae spp.). On the contrary, acclimatization process resulted in no pathway shift with the mesophilic acclimatized culture. When nonacclimatized thermophilic culture was exposed to high ammonia levels (7 g NH4 +-N L(-1)), aceticlastic Methanosarcinaceae spp. was found to be the dominant methanogen.


Asunto(s)
Ácido Acético/metabolismo , Amoníaco/metabolismo , Metano/biosíntesis , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Methanosarcinaceae/metabolismo , Aclimatación , Biocombustibles , Hibridación Fluorescente in Situ , Consorcios Microbianos
18.
Mikrobiologiia ; 82(6): 723-31, 2013.
Artículo en Ruso | MEDLINE | ID: mdl-25509411

RESUMEN

At ten stations of the meridian profile in the eastern Kara Sea from the Yenisei estuary through the shallow shelf and further through the St. Anna trough, total microbial numbers (TMN) determined by direct counting, total activity of the microbial community determined by dark CO2 assimilation (DCA), and the carbon isotopic composition of organic matter in suspension and upper sediment horizons (δ13C, per thousand) were investigated. Three horizons were studied in detail: (1) the near-bottom water layer (20-30 cm above the sediment); (2) the uppermost, strongly hydrated sediment horizon, further termed warp (5-10 mm); and (3) the upper sediment horizon (1-5 cm). Due to decrease in the amount of isotopically light carbon of terrigenous origin with increasing distance from the Yenisei estuary, the TMN and DCA values decreased, and the δ13C changed gradually from -29.7 to -23.9 per thousand. At most stations, a noticeable decrease in TMN and DCA values with depth was observed in the water column, while the carbon isotopic composition of suspended organic matter did not change significantly. Considerable changes of all parameters were detected in the interface zone: TMN and DCA increased in the sediments compared to their values in near-bottom water, while the 13C content increased significantly, with δ13C of organic matter in the sediments being at some stations 3.5- 4.0 per thousand higher than in the near-bottom water. Due to insufficient illumination in the near-bottom zone, newly formed isotopically heavy organic matter (δ13C(-) -20 per thousand) could not be formed by photosynthesis, active growth of chemoautotrophic microorganisms in this zone is suggested, which may use reduced sulfur, nitrogen, and carbon compounds diffusing from anaerobic sediments. High DCA values for the interface zone samples confirm this hypothesis. Moreover, neutrophilic sulfur-oxidizing bacteria were retrieved from the samples of this zone.


Asunto(s)
Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Océanos y Mares , Microbiología del Agua , Regiones Árticas , Isótopos de Carbono/análisis , Isótopos de Carbono/metabolismo , Federación de Rusia
19.
Biotechnol Bioeng ; 109(11): 2729-36, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22615033

RESUMEN

Biogas produced by anaerobic digestion, is mainly used in a gas motor for heat and electricity production. However, after removal of CO(2) , biogas can be upgraded to natural gas quality, giving more utilization possibilities, such as utilization as autogas, or distant utilization by using the existing natural gas grid. The current study presents a new biological method for biogas upgrading in a separate biogas reactor, containing enriched hydrogenotrophic methanogens and fed with biogas and hydrogen. Both mesophilic- and thermophilic anaerobic cultures were enriched to convert CO(2) to CH(4) by addition of H(2) . Enrichment at thermophilic temperature (55°C) resulted in CO(2) and H(2) bioconversion rate of 320 mL CH(4) /(gVSS h), which was more than 60% higher than that under mesophilic temperature (37°C). Different dominant species were found at mesophilic- and thermophilic-enriched cultures, as revealed by PCR-DGGE. Nonetheless, they all belonged to the order Methanobacteriales, which can mediate hydrogenotrophic methanogenesis. Biogas upgrading was then tested in a thermophilic anaerobic reactor under various operation conditions. By continuous addition of hydrogen in the biogas reactor, high degree of biogas upgrading was achieved. The produced biogas had a CH(4) content, around 95% at steady-state, at gas (mixture of biogas and hydrogen) injection rate of 6 L/(L day). The increase of gas injection rate to 12 L/(L day) resulted in the decrease of CH(4) content to around 90%. Further study showed that by decreasing the gas-liquid mass transfer by increasing the stirring speed of the mixture the CH(4) content was increased to around 95%. Finally, the CH(4) content around 90% was achieved in this study with the gas injection rate as high as 24 L/(L day).


Asunto(s)
Biocombustibles/microbiología , Reactores Biológicos/microbiología , Dióxido de Carbono/metabolismo , Hidrógeno/metabolismo , Metano/metabolismo , Methanobacteriales/metabolismo , Anaerobiosis , Dermatoglifia del ADN , ADN de Archaea/genética , Electroforesis en Gel de Gradiente Desnaturalizante , Methanobacteriales/clasificación , Methanobacteriales/genética , Reacción en Cadena de la Polimerasa , Temperatura
20.
J Biotechnol ; 161(2): 167-73, 2012 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-22542628

RESUMEN

Methanogens are of biotechnological interest because of their importance in biogas production. Here we investigate the suitability of sediments from Central Asian soda lakes as inoculum for high pH methane-producing bioreactors. Methane production in these sediments was modest (up to 2.5 µmol mL sediment), with methanol and hydrogen as the preferred substrates. The responsible methanogenic community was characterized based on mcrA gene sequences. McrA gene sequences so far specific to these habitats indicated the presence of two clusters within the orders Methanobacteriales and Methanomicrobiales, one apparently including representatives of the genus Methanocalculus and another distantly related to the genus Methanobacterium.


Asunto(s)
Sedimentos Geológicos/microbiología , Lagos/microbiología , Metano/metabolismo , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Acetatos/química , Reactores Biológicos/microbiología , Genes Bacterianos , Hidrógeno/química , Concentración de Iones de Hidrógeno , Methanobacteriales/genética , Methanobacteriales/aislamiento & purificación , Metanol/química , Methanomicrobiales/genética , Methanomicrobiales/aislamiento & purificación , Filogenia , Cloruro de Sodio/química
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