A comparative analysis of complete chloroplast genomes of seven Ocotea species (Lauraceae) confirms low sequence divergence within the Ocotea complex.

The genus Ocotea (Lauraceae) includes about 450 species, of which about 90% are Neotropical, while the rest is from Macaronesia, Africa and Madagascar. In this study we present the first complete chloroplast genome sequences of seven Ocotea species, six Neotropical and one from Macaronesia. Genome sizes range from 152,630 (O. porosa) to 152,685 bp (O. aciphylla). All seven plastomes contain a total of 131 (114 unique) genes, among which 87 (80 unique) encode proteins. The order of genes (if present) is the same in all Lauraceae examined so far. Two hypervariable loci were found in the LSC region (psbA-trnH, ycf2), three in the SSC region (ycf1, ndhH, trnL(UAG)-ndhF). The pairwise cp genomic alignment between the taxa showed that the LSC and SSC regions are more variable compared to the IR regions. The protein coding regions comprise 25,503-25,520 codons in the Ocotea plastomes examined. The most frequent amino acids encoded in the plastomes were leucine, isoleucine, and serine. SSRs were found to be more frequent in the two dioecious Neotropical Ocotea species than in the four bisexual species and the gynodioecious species examined (87 vs. 75-84 SSRs). A preliminary phylogenetic analysis based on 69 complete plastomes of Lauraceae species shows the seven Ocotea species as sister group to Cinnamomum sensu lato. Sequence divergence among the Ocotea species appears to be much lower than among species of the most closely related, likewise species-rich genera Cinnamomum, Lindera and Litsea.

Chemical Diversity, Biological Activity, and Genetic Aspects of Three Ocotea Species from the Amazon.

Ocotea species present economic importance and biological activities attributed to their essential oils (EOs) and extracts. For this reason, various strategies have been developed for their conservation. The chemical compositions of the essential oils and matK DNA sequences of O. caudata, O. cujumary, and O. caniculata were subjected to comparison with data from O. floribunda, O. veraguensis, and O. whitei, previously reported. The multivariate analysis of chemical composition classified the EOs into two main clusters. Group I was characterized by the presence of α-pinene (9.8-22.5%) and ß-pinene (9.7-21.3%) and it includes O. caudata, O. whitei, and O. floribunda. In group II, the oils of O. cujumary and O. caniculata showed high similarity due amounts of ß-caryophyllene (22.2% and 18.9%, respectively). The EO of O. veraguensis, rich in p-cymene (19.8%), showed minor similarity among all samples. The oils displayed promising antimicrobial and cytotoxic activities against Escherichia coli (minimum inhibitory concentration (MIC) < 19.5 µg·mL-1) and MCF-7 cells (median inhibitory concentration (IC50) ≅ 65.0 µg·mL-1), respectively. The analysis of matK gene displayed a good correlation with the main class of chemical compounds present in the EOs. However, the matK gene data did not show correlation with specific compounds.

Development and characterization of microsatellite loci for Ocotea species (Lauraceae) threatened with extinction.

The Atlantic rainforest species Ocotea catharinensis, Ocotea odorifera, and Ocotea porosa have been extensively harvested in the past for timber and oil extraction and are currently listed as threatened due to overexploitation. To investigate the genetic diversity and population structure of these species, we developed 8 polymorphic microsatellite markers for O. odorifera from an enriched microsatellite library by using 2 dinucleotide repeats. The microsatellite markers were tested for cross-amplification in O. catharinensis and O. porosa. The average number of alleles per locus was 10.2, considering all loci over 2 populations of O. odorifera. Observed and expected heterozygosities for O. odorifera ranged from 0.39 to 0.93 and 0.41 to 0.92 across populations, respectively. Cross-amplification of all loci was successfully observed in O. catharinensis and O. porosa except 1 locus that was found to lack polymorphism in O. porosa. Combined probabilities of identity in the studied Ocotea species were very low ranging from 1.0 x 10-24 to 7.7 x 10-24. The probability of exclusion over all loci estimated for O. odorifera indicated a 99.9% chance of correctly excluding a random nonparent individual. The microsatellite markers described in this study have high information content and will be useful for further investigations on genetic diversity within these species and for subsequent conservation purposes.

Mutagenicity and recombinagenicity of Ocotea acutifolia (Lauraceae) aporphinoid alkaloids.

The somatic mutation and recombination test (SMART) in wing cells of Drosophila melanogaster was used to test the mutagenic and recombinogenic activities of five aporphinoid alkaloids isolated from Ocotea acutifolia: thalicminine (1), (+)-dicentrine (2), (+)-ocoteine (3), (+)-6S-ocoteine N-oxide (4), and (+)-leucoxine (5). Third-stage larvae derived from the standard cross with wing cell markers mwh and/or flr(3) were treated chronically. The frequencies of mutant spots observed in marked heterozygous descendants revealed significant dose-dependent genotoxicity for alkaloids 1-4; compounds 1 and 2 were the most active. Alkaloids 1-4 also induced mitotic recombination. The presence of a methoxyl group at C-3 (as in compound 3) lowers its genotoxic effect relative to that of unsubstituted analogue 2, and the introduction of an N-oxide functionality (3 vs. 4) further reduces genotoxicity. The very planar conformation of oxo-aporphine alkaloid 1 may account for its higher genotoxicity vs. its less-planar analogues 3 and 4. As previously reported for (+)-dicentrine (2), alkaloids 1, 3, and 4 may also be DNA intercalating agents, interfering with the catalytic activity of topoisomerases.

Leaf size in three generations of a dioecious tropical tree, Ocotea tenera (Lauraceae): Sexual dimorphism and changes with age.

PREMISE OF THE STUDY: In dioecious species, selection should favor different leaf sizes in males and females whenever the sexes experience distinct environments or constraints such as different costs of reproduction. We took advantage of a long-term experimental study of Ocotea tenera (Lauraceae), a dioecious understory tree in Monteverde, Costa Rica, to explore leaf size differences between genders and age classes across generations. METHODS: We measured leaf size in adult trees in a natural population, in their adult F(1) offspring in two experimental populations, and in their F(2) offspring at the seedling stage. Individual trees were measured at various times over 20 yr. RESULTS: Leaves of female trees averaged 8% longer and 12% greater in area than those of males. Leaves were sexually dimorphic at reproductive maturity. Leaf size declined during the lifetime of most trees. Heritability estimates for leaf length were positive although not statistically significant (h(2) = 0.63, SE = 0.48, P = 0.095). CONCLUSIONS: We ruled out the ecological causation hypothesis for sexual dimorphism in leaf size because male and female trees co-occurred in the same habitats. Sexual dimorphism appeared not to result from genetic or phenotypic correlations with other traits such as height or flower size. Rather, females appear to compensate for higher costs of reproduction and diminished photosynthetic capacity by producing larger leaves. Additive genetic variance in leaf size, a prerequisite for an evolutionary response to selection for sexual dimorphism, was suggested by positive (although only marginally significant) heritability estimates.

Previous-year reproduction reduces photosynthetic capacity and slows lifetime growth in females of a neotropical tree.

Females of dioecious plant species typically invest more in reproduction than males because they produce seeds, fruits, and associated structures in addition to flowers. If females are unable to compensate by up-regulating rates of photosynthesis or by reproducing less frequently than males, their greater reproductive investment may result in reduced growth or higher mortality. Here we provide evidence of the cost of reproduction in Ocotea tenera (Lauraceae), a dioecious neotropical tree common in lower montane forests of Monteverde, Costa Rica. Over periods of 12-21 years, females grew more slowly than males in a natural population and in two experimental plots where we were able to control for genotype, age, habitat, and reproductive history. Simultaneous measurements of 10 matched pairs of sibling trees of the opposite sex but same age demonstrated that the photosynthetic capacities of females were 13% lower than those of males. Among females, photosynthetic capacity was negatively correlated with fruit production during the most recent reproductive season but not with lifetime fruit production. Sexual size dimorphism in adult O. tenera trees appears to be a nonadaptive consequence of trading off recent reproduction against maintenance of the photosynthetic apparatus, with long-term negative effects on growth.