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1.
J Gen Virol ; 102(12)2021 12.
Artículo en Inglés | MEDLINE | ID: mdl-34870577

RESUMEN

Middle Point orbivirus (MPOV) is an Australian arbovirus, belongs to the Yunnan orbivirus species found in China. First detected and reported from Beatrice Hill, Northern Territory (NT), MPOV has to date, only been exclusively reported from the NT, Australia. Whilst genetic characterization of MPOV has been previously described, only restricted to sequence information for segments 2 and 3 coding core protein VP2 and outer capsid protein VP3, respectively. This study presents for the first time nearly full-length genome sequences of MPOV, which represent 24 isolates collected over a span of more than 20 years from 1997 to 2018. Whilst the majority of isolates were sampled at Beatrice Hill, NT where MPOV is most frequently isolated, this report also describes the first two isolations of MPOV from Queensland (QLD), Australia. One of which is the first non-bovine isolate obtained from the mosquito vector Aedes vittiger. We further compared these MPOV sequences with known sequences of the Yunnan orbivirus and other known orbivirus sequences of mosquito origin found in Australia. The phylogenetic analyses indicate the Australian MPOV sequences are more closely related to each other than other known sequences of Yunnan orbivirus. Furthermore, MPOV sequences are closely related to sequences from the Indonesian isolate JKT-8650. The clustering of Australian sequences in the phylogenetic tree suggests the monophyletic lineage of MPOV circulating in Australia. Further, ongoing surveillance is required to assess the existence and prevalence of this or other yet undetected lineages of MPOV and other orbiviruses in Australia.


Asunto(s)
Genoma Viral/genética , Orbivirus/genética , Filogenia , Aedes/virología , Animales , Australia , Bovinos/virología , Mosquitos Vectores/virología , Orbivirus/clasificación , Orbivirus/aislamiento & purificación , Infecciones por Reoviridae/transmisión , Infecciones por Reoviridae/veterinaria , Infecciones por Reoviridae/virología , Especificidad de la Especie , Proteínas Virales/genética
2.
J Gen Virol ; 102(9)2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-34494948

RESUMEN

Orbiviruses are arboviruses with 10 double-stranded linear RNA segments, and some have been identified as pathogens of dramatic epizootics in both wild and domestic ruminants. Tibet orbivirus (TIBOV) is a new orbivirus isolated from hematophagous insects in recent decades, and, currently, most of the strains have been isolated from insects in PR China, except for two from Japan. In this study, we isolated a novel reassortment TIBOV strain, YN15-283-01, from Culicoides spp. To identify and understand more characteristics of YN15-283-01, electrophoresis profiles of the viral genome, electron microscopic observations, plaque assays, growth curves in various cell lines, and bioinformatic analysis were conducted. The results indicated that YN15-283-01 replicated efficiently in mosquito cells, rodent cells and several primate cells. Furthermore, the maximum likelihood phylogenetic trees and simplot analysis of the 10 segments indicated that YN15-283-01 is a natural reassortment isolate that had emerged mainly from XZ0906 and SX-2017a.


Asunto(s)
Ceratopogonidae/virología , Orbivirus/aislamiento & purificación , Orbivirus/fisiología , Virus Reordenados/aislamiento & purificación , Virus Reordenados/fisiología , Animales , Línea Celular , China , Genoma Viral , Humanos , Orbivirus/clasificación , Orbivirus/genética , Filogenia , ARN Bicatenario/genética , ARN Viral/genética , Virus Reordenados/clasificación , Virus Reordenados/genética , Replicación Viral
3.
J Gen Virol ; 102(9)2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-34554079

RESUMEN

The genus Orbivirus includes a variety of pathogenic viruses that are transmitted by biting midges, mosquitoes and ticks. Some of the economically most relevant orbiviruses are endemic to Namibia, like the livestock-pathogenic Bluetongue and African horse sickness viruses. Here, we assessed the diversity of orbiviruses circulating in the Zambezi region of north-eastern Namibia. A total of 10 250 biting midges and 10 206 mosquitoes were collected and screened for orbivirus infections. We identified Palyam virus (PALV) in a pool of biting midges (Culicoides sp.) sampled in the Wuparo Conservancy and three strains of Corriparta virus (CORV) in Culex sp. mosquitoes sampled in Mudumu National Park and the Mashi Conservancy. This is, to our knowledge, the first detection of PALV and CORV in Namibia. Both viruses infect vertebrates but only PALV has been reported to cause disease. PALV can cause foetal malformations and abortions in ruminants. Furthermore, a novel orbivirus, related to Kammavanpettai virus from India and Umatilla virus from North America, was discovered in biting midges (Culicoides sp.) originating from Mudumu National Park and tentatively named Mudumu virus (MUMUV). Complete genomes of PALV, CORV and MUMUV were sequenced and genetically characterized. The Namibian CORV strain showed 24.3 % nucleotide divergence in its subcore shell gene to CORV strains from Australia, indicating that African CORV variants vary widely from their Australian relatives. CORV was isolated in cell culture and replicated to high titres in mosquito and duck cells. No growth was found in rodent and primate cells. The data presented here show that diverse orbiviruses are endemic to the Zambezi region. Further studies are needed to assess their effects on wildlife and livestock.


Asunto(s)
Ceratopogonidae/virología , Culicidae/virología , Orbivirus/aislamiento & purificación , Animales , Línea Celular , Genoma Viral , Secuenciación de Nucleótidos de Alto Rendimiento , Insectos Vectores/virología , Mosquitos Vectores/virología , Namibia , Orbivirus/clasificación , Orbivirus/genética , Orbivirus/fisiología , Filogenia , Replicación Viral , Secuenciación Completa del Genoma
4.
Sci Rep ; 11(1): 7430, 2021 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-33795699

RESUMEN

Bats are known to be reservoirs of several highly pathogenic viruses. Hence, the interest in bat virus discovery has been increasing rapidly over the last decade. So far, most studies have focused on a single type of virus detection method, either PCR, virus isolation or virome sequencing. Here we present a comprehensive approach in virus discovery, using all three discovery methods on samples from the same bats. By family-specific PCR screening we found sequences of paramyxoviruses, adenoviruses, herpesviruses and one coronavirus. By cell culture we isolated a novel bat adenovirus and bat orthoreovirus. Virome sequencing revealed viral sequences of ten different virus families and orders: three bat nairoviruses, three phenuiviruses, one orbivirus, one rotavirus, one orthoreovirus, one mononegavirus, five parvoviruses, seven picornaviruses, three retroviruses, one totivirus and two thymoviruses were discovered. Of all viruses identified by family-specific PCR in the original samples, none was found by metagenomic sequencing. Vice versa, none of the viruses found by the metagenomic virome approach was detected by family-specific PCRs targeting the same family. The discrepancy of detected viruses by different detection approaches suggests that a combined approach using different detection methods is necessary for virus discovery studies.


Asunto(s)
Quirópteros/virología , Genoma Viral , Viroma/genética , Animales , Chlorocebus aethiops , Alemania , Secuenciación de Nucleótidos de Alto Rendimiento , Nairovirus/clasificación , Nairovirus/genética , Orbivirus/clasificación , Orbivirus/genética , Filogenia , Reacción en Cadena de la Polimerasa , Rotavirus/clasificación , Rotavirus/genética , Células Vero , Virus/clasificación , Virus/genética
5.
Arch Virol ; 166(4): 1151-1156, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33547486

RESUMEN

Tibet orbivirus (TIBOV) was initially isolated in Tibet in 2009 and subsequently in Guangdong, Hunan, and Yunnan, China. We document the first isolation of TIBOV outside of China: two TIBOV isolates from Culicoides collected in 2009 and 2010 in Kagoshima, Japan. Their complete genome sequences were also determined. Our results suggest that the two virus isolates are of novel serotypes, evident by variability within genome segment 2 encoding VP2. These new putative TIBOV serotypes will help with future virus surveillance and with the evaluation of its potential to cause disease in domestic ruminants.


Asunto(s)
Genoma Viral/genética , Orbivirus/genética , Orbivirus/aislamiento & purificación , Animales , Ceratopogonidae/virología , Genómica , Japón , Orbivirus/clasificación , Filogenia , ARN Viral/genética , Homología de Secuencia , Serogrupo , Proteínas Virales/genética
6.
Arch Virol ; 165(12): 2903-2908, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-32894348

RESUMEN

A novel orbivirus (genus Orbivirus, family Reoviridae), designated Yonaguni orbivirus (YONOV), was isolated from bovine blood collected on a subtropical island of Japan in 2015. The YONOV genome (20,054 nucleotides in total) has a coding arrangement similar to those of mosquito-borne orbiviruses. YONOV has a close genetic relationship to mosquito-borne orbiviruses, especially to Mobuck virus (MBV), which was isolated in North America. However, YONOV and MBV share less than 74% nucleotide sequence identity in the major subcore protein (T2) coding sequence, which satisfies the criterion for species demarcation. It is still uncertain whether YONOV should be assigned to a novel species in the genus Orbivirus.


Asunto(s)
Genoma Viral , Orbivirus/clasificación , Orbivirus/aislamiento & purificación , Filogenia , Infecciones por Reoviridae/veterinaria , Proteínas Virales/genética , Animales , Bovinos/virología , Culicidae/virología , Japón , Sistemas de Lectura Abierta , Infecciones por Reoviridae/virología , Análisis de Secuencia de ADN
7.
Viruses ; 12(2)2020 02 21.
Artículo en Inglés | MEDLINE | ID: mdl-32098186

RESUMEN

The discovery and characterization of novel arthropod-borne viruses provide valuable information on their genetic diversity, ecology, evolution and potential to threaten animal or public health. Arbovirus surveillance is not conducted regularly in Romania, being particularly very scarce in the remote and diverse areas like the Danube Delta. Here we describe the detection and genetic characterization of a novel orbivirus (Reoviridae: Orbivirus) designated as Letea virus, which was found in grass snakes (Natrix natrix) during a metagenomic and metatranscriptomic survey conducted between 2014 and 2017. This virus is the first orbivirus discovered in reptiles. Phylogenetic analyses placed Letea virus as a highly divergent species in the Culicoides-/sand fly-borne orbivirus clade. Gene reassortment and intragenic recombination were detected in the majority of the nine Letea virus strains obtained, implying that these mechanisms play important roles in the evolution and diversification of the virus. However, the screening of arthropods, including Culicoides biting midges collected within the same surveillance program, tested negative for Letea virus infection and could not confirm the arthropod vector of the virus. The study provided complete genome sequences for nine Letea virus strains and new information about orbivirus diversity, host range, ecology and evolution. The phylogenetic associations warrant further screening of arthropods, as well as sustained surveillance efforts for elucidation of Letea virus natural cycle and possible implications for animal and human health.


Asunto(s)
Colubridae/virología , Genoma Viral , Genómica , Orbivirus/clasificación , Filogenia , Virus Reordenados/genética , Animales , Arbovirus/genética , Variación Genética , Especificidad del Huésped , Orbivirus/aislamiento & purificación , Psychodidae/virología , Virus Reordenados/clasificación , Recombinación Genética , Rumanía , Análisis de Secuencia de ADN , Secuenciación Completa del Genoma
8.
Viruses ; 12(1)2019 12 20.
Artículo en Inglés | MEDLINE | ID: mdl-31861885

RESUMEN

We report the detection and gene coding sequences of three novel Orbivirus species found in six dead farmed white-tailed deer in the United States. Phylogenetic analyses indicate that the new orbiviruses are genetically closely related to the Guangxi, Mobuck, Peruvian horse sickness, and Yunnan orbiviruses, which are thought to be solely borne by mosquitos. However, four of the six viruses analyzed in this work were found as co-infecting agents along with a known cervid pathogen, epizootic hemorrhagic disease virus-2 (EHDV-2), raising questions as to whether the new viruses are primary pathogens or secondary pathogens that exacerbate EHDV-2 infections. Moreover, EHDV-2 is known to be a Culicoides-borne virus, raising additional questions as to whether Culicoides species can also serve as vectors for the novel orbiviruses, if mosquitoes can vector EHDV-2, or whether the deer were infected through separate bites by the insects. Our findings expand knowledge of the possible viral pathogens of deer in the United States. Moreover, due to the close genetic relatedness of the three new orbiviruses to viruses that are primary pathogens of cattle and horses, our findings also underscore a crucial need for additional research on the potential role of the three new orbiviruses as pathogens of other animals.


Asunto(s)
Enfermedades de los Animales/epidemiología , Enfermedades de los Animales/virología , Animales Domésticos , Ciervos , Orbivirus , Infecciones por Reoviridae/veterinaria , Animales , Biología Computacional/métodos , Genoma Viral , Genómica/métodos , Geografía Médica , Orbivirus/clasificación , Orbivirus/genética , Orbivirus/ultraestructura , Filogenia , Vigilancia en Salud Pública , Estados Unidos/epidemiología
9.
Ticks Tick Borne Dis ; 10(6): 101254, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31327746

RESUMEN

Ixodes persulcatus and Ixodes pavlovskyi ticks, two closely related species of the I. ricinus - I. persulcatus group, are widely distributed in the southern part of Western Siberia. Recently, the existence of natural hybrids of I. persulcatus and I. pavlovskyi ticks has been demonstrated. The aim of this study was to evaluate the abundance of I. persulcatus/pavlovskyi hybrids in several locations with different ratios of parental tick species and to investigate the prevalence and genetic variability of a wide range of infectious agents in these hybrids compared to the parental tick species. Natural hybrids of I. persulcatus and I. pavlovskyi ticks were identified in all examined locations in Altai and Novosibirsk, Western Siberia, Russia. The abundance of hybrids varied from 7% to 40% in different locations and was maximal in a location with similar proportions of I. persulcatus and I. pavlovskyi ticks. For the first time, it was shown that hybrids can be infected with the same agents as their parental tick species: tick-borne encephalitis and Kemerovo viruses, Borrelia afzelii, Borrelia bavariensis, Borrelia garinii, Borrelia miyamotoi, Rickettsia helvetica, Rickettsia raoultii, Rickettsia sibirica, "Candidatus Rickettsia tarasevichiae", Anaplasma phagocytophilum, Ehrlichia muris, "Candidatus Neoehrlichia mikurensis", and Babesia microti. The prevalence of most bacterial agents in hybrids was intermediate compared to their parental tick species. Most genetic variants of the identified agents have been previously found in the parental tick species. Wide distribution of I. persulcatus/pavlovskyi natural hybrids implies that I. persulcatus, I. pavlovskyi and their hybrids coexist in all I. persulcatus - I. pavlovskyi sympatric areas.


Asunto(s)
Hibridación Genética , Ixodes/microbiología , Ixodes/parasitología , Anaplasmataceae/clasificación , Anaplasmataceae/aislamiento & purificación , Animales , Secuencia de Bases , Grupo Borrelia Burgdorferi/clasificación , Grupo Borrelia Burgdorferi/aislamiento & purificación , Virus de la Encefalitis Transmitidos por Garrapatas/clasificación , Virus de la Encefalitis Transmitidos por Garrapatas/aislamiento & purificación , Femenino , Ixodes/genética , Masculino , Orbivirus/clasificación , Orbivirus/aislamiento & purificación , Filogenia , Rickettsia/clasificación , Rickettsia/aislamiento & purificación , Alineación de Secuencia , Siberia
10.
Viruses ; 11(5)2019 05 16.
Artículo en Inglés | MEDLINE | ID: mdl-31100884

RESUMEN

The Palyam serogroup orbiviruses are associated with abortion and teratogenesis in cattle and other ruminants. Of the 13 different serotypes that have been identified, the full genome sequence of only one, Kasba, has been published. We undertook to perform Next Generation Sequencing (NGS) and phylogenetic analysis on 12 Palyam serotypes plus field isolates of the African serotypes in our possession. The Palyam serogroup was found to be most closely related to the African horse sickness virus group and showed the most distant evolutionary relationship to the equine encephalosis viruses (EEV). Amino acid sequence analysis revealed that the gene encoding VP7 was the most conserved within serotypes and VP2 and VP5 showed the highest degree of variation. A high degree of sequence identity was found for isolates from the same geographical region. The phylogenetic analysis revealed two clades where the African serotypes were all very closely related in one clade and the other clade contained the Australian and Asian serotypes and one African serotype, Petevo. It was evident from the sequence data that the geographical origin of Palyam serogroup viruses played an important role in the development of the different serotypes.


Asunto(s)
Orbivirus/clasificación , Filogenia , Serogrupo , Virus de la Enfermedad Equina Africana/clasificación , Animales , Pueblo Asiatico , Australia , Secuencia de Bases , Evolución Biológica , Bovinos , Humanos , Orbivirus/genética , Orbivirus/aislamiento & purificación , Serotipificación
11.
J Virol ; 93(13)2019 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-30971476

RESUMEN

In 2011, ticks were collected from livestock following an outbreak of Crimean Congo hemorrhagic fever (CCHF) in Gujarat state, India. CCHF-negative Hyalomma anatolicum tick pools were passaged for virus isolation, and two virus isolates were obtained, designated Karyana virus (KARYV) and Kundal virus (KUNDV), respectively. Traditional reverse transcription-PCR (RT-PCR) identification of known viruses was unsuccessful, but a next-generation sequencing (NGS) approach identified KARYV and KUNDV as viruses in the Reoviridae family, Orbivirus and Coltivirus genera, respectively. Viral genomes were de novo assembled, yielding 10 complete segments of KARYV and 12 nearly complete segments of KUNDV. The VP1 gene of KARYV shared a most recent common ancestor with Wad Medani virus (WMV), strain Ar495, and based on nucleotide identity we demonstrate that it is a novel WMV strain. The VP1 segment of KUNDV shares a common ancestor with Colorado tick fever virus, Eyach virus, Tai Forest reovirus, and Tarumizu tick virus from the Coltivirus genus. Based on VP1, VP6, VP7, and VP12 nucleotide and amino acid identities, KUNDV is proposed to be a new species of Coltivirus Electron microscopy supported the classification of KARYV and KUNDV as reoviruses and identified replication morphology consistent with other orbi- and coltiviruses. The identification of novel tick-borne viruses carried by the CCHF vector is an important step in the characterization of their potential role in human and animal pathogenesis.IMPORTANCE Ticks and mosquitoes, as well Culicoides, can transmit viruses in the Reoviridae family. With the help of next-generation sequencing (NGS), previously unreported reoviruses such as equine encephalosis virus, Wad Medani virus (WMV), Kammavanpettai virus (KVPTV), and, with this report, KARYV and KUNDV have been discovered and characterized in India. The isolation of KUNDV and KARYV from Hyalomma anatolicum, which is a known vector for zoonotic pathogens, such as Crimean Congo hemorrhagic fever virus, Babesia, Theileria, and Anaplasma species, identifies arboviruses with the potential to transmit to humans. Characterization of KUNDV and KARYV isolated from Hyalomma ticks is critical for the development of specific serological and molecular assays that can be used to determine the association of these viruses with disease in humans and livestock.


Asunto(s)
Coltivirus/clasificación , Coltivirus/aislamiento & purificación , Virus de la Fiebre Hemorrágica de Crimea-Congo/aislamiento & purificación , Fiebre Hemorrágica de Crimea/complicaciones , Orbivirus/clasificación , Orbivirus/aislamiento & purificación , Filogenia , Garrapatas/virología , Animales , Chlorocebus aethiops , Coltivirus/genética , Culicidae/virología , Genoma Viral , Virus de la Fiebre Hemorrágica de Crimea-Congo/clasificación , Virus de la Fiebre Hemorrágica de Crimea-Congo/genética , Fiebre Hemorrágica de Crimea/epidemiología , Fiebre Hemorrágica de Crimea/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , India , Mosquitos Vectores/virología , Orbivirus/genética , Reoviridae/clasificación , Reoviridae/genética , Reoviridae/aislamiento & purificación , Reoviridae/ultraestructura , Células Vero , Ensayo de Placa Viral , Proteínas Virales/genética
12.
Viruses ; 11(3)2019 03 02.
Artículo en Inglés | MEDLINE | ID: mdl-30832334

RESUMEN

While serological and virological evidence documents the exposure of bats to medically-important arboviruses, their role as reservoirs or amplifying hosts is less well-characterized. We describe a novel orbivirus (Reoviridae:Orbivirus) isolated from an Egyptian fruit bat (Rousettus aegyptiacus leachii) trapped in 2013 in Uganda and named Bukakata orbivirus. This is the fifth orbivirus isolated from a bat, however genetic information had previously only been available for one bat-associated orbivirus. We performed whole-genome sequencing on Bukakata orbivirus and three other bat-associated orbiviruses (Fomede, Ife, and Japanaut) to assess their phylogenetic relationship within the genus Orbivirus and develop hypotheses regarding potential arthropod vectors. Replication kinetics were assessed for Bukakata orbivirus in three different vertebrate cell lines. Lastly, qRT-PCR and nested PCR were used to determine the prevalence of Bukakata orbivirus RNA in archived samples from three populations of Egyptian fruit bats and one population of cave-associated soft ticks in Uganda. Complete coding sequences were obtained for all ten segments of Fomede, Ife, and Japanaut orbiviruses and for nine of the ten segments for Bukakata orbivirus. Phylogenetic analysis placed Bukakata and Fomede in the tick-borne orbivirus clade and Ife and Japanaut within the Culicoides/phlebotomine sandfly orbivirus clade. Further, Bukakata and Fomede appear to be serotypes of the Chobar Gorge virus species. Bukakata orbivirus replicated to high titers (106⁻107 PFU/mL) in Vero, BHK-21 [C-13], and R06E (Egyptian fruit bat) cells. Preliminary screening of archived bat and tick samples do not support Bukakata orbivirus presence in these collections, however additional testing is warranted given the phylogenetic associations observed. This study provided complete coding sequence for several bat-associated orbiviruses and in vitro characterization of a bat-associated orbivirus. Our results indicate that bats may play an important role in the epidemiology of viruses in the genus Orbivirus and further investigation is warranted into vector-host associations and ongoing surveillance efforts.


Asunto(s)
Quirópteros/virología , Reservorios de Enfermedades/virología , Orbivirus/clasificación , Replicación Viral , Animales , Línea Celular , Chlorocebus aethiops , Genoma Viral , Sistemas de Lectura Abierta , Orbivirus/aislamiento & purificación , Orbivirus/fisiología , Filogenia , ARN Viral/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Análisis de Secuencia de ADN , Células Vero , Proteínas Virales/genética , Secuenciación Completa del Genoma
13.
Braz J Microbiol ; 50(1): 287-296, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30637652

RESUMEN

Equine encephalosis (EE) is an acute, arthropod-borne, noncontagious, febrile disease of equids. The clinical signs of EE are similar to milder forms of African horse sickness (AHS) and the two diseases can be easily confused. The Equine encephalosis virus (EEV) is a distinct virus species within the genus Orbivirus, family Reoviridae, with ten linear segments of dsRNA genome. Seven distinct serotypes of EEV have been recognised on the basis of sequence analyses of Seg-2. The need for differential diagnosis of similar forms of EE and AHS warranted the development of molecular diagnostic methods for specific detection and identification of EEV. We report the development of quantitative real-time RT-PCR assay for detection of any member of the EEV species targeting the highly conserved EEV Seg-9. Similar serotype-specific qRT-PCR assays were designed for each of the seven EEV serotypes targeting genome Seg-2, encoding the serotype determining VP2 protein. These assays were evaluated using different EEV serotypes and other closely related orbiviruses. They were shown to be EEV virus species-specific, or EEV type-specific capable of detecting 1 to 13 copies of viral RNA in clinical samples. The assays failed to detect RNA from closely related orbiviruses, including AHSV and Peruvian horse sickness virus (PHSV) isolates.


Asunto(s)
Infecciones por Arbovirus/veterinaria , Enfermedades de los Caballos/virología , Orbivirus/aislamiento & purificación , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Animales , Infecciones por Arbovirus/diagnóstico , Infecciones por Arbovirus/virología , Enfermedades de los Caballos/diagnóstico , Caballos , Orbivirus/clasificación , Orbivirus/genética , Filogenia
14.
J Gen Virol ; 100(2): 295-300, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30632960

RESUMEN

The genomic organization and in vitro host range of a novel mosquito-associated orbivirus, designated Skunk River virus, is described. The virus was isolated from Aedes trivittatus collected in Iowa in the United States. Three recognized viruses were also recovered: Culex flavivirus (family Flaviviridae), Houston virus (family Mesoniviridae) and Umatilla virus (family Reoviridae). The genome of Skunk River virus contains 10 segments and its organization is characteristic of viruses in the genus Orbivirus (family Reoviridae). The coding region of each segment was fully sequenced, revealing that the greatest nucleotide identity was to the corresponding regions of Big Cypress orbivirus and Sathuvachari virus, two recently described mosquito-associated orbiviruses. The phylogenetic inference is in agreement with these findings. In vitro host range experiments revealed that Aedes, Anopheles and Culex cell lines, and select lepidopteran and rodent cell lines, are permissive to Skunk River virus replication. In conclusion, we provide evidence of a novel mosquito-associated orbivirus in Iowa.


Asunto(s)
Aedes/virología , Genoma Viral , Especificidad del Huésped , Orbivirus/clasificación , Orbivirus/aislamiento & purificación , Animales , Anopheles , Línea Celular , Culex , Orden Génico , Iowa , Lepidópteros , Orbivirus/genética , Orbivirus/fisiología , Filogenia , Roedores , Análisis de Secuencia de ADN , Homología de Secuencia
15.
Vopr Virusol ; 64(5): 221-228, 2019.
Artículo en Ruso | MEDLINE | ID: mdl-32167687

RESUMEN

INTRODUCTION: There are natural foci of Crimean-Congo hemorrhagic fever (CCHF) that vectored by Hyalomma marginatum ticks in Volga river delta (Astrakhan region, South of Russia). The circulation of Dhori virus (DHOV) (Thogotovirus: Orthomyxoviridae) has been also shown here. We hypothesized that other tick-borne arboviruses are also likely to circulate in the region. In particular, Bhanja virus (Phlebovirus: Phenuiviridae), Wad Medani virus (Orbivirus: Reoviridae), and Tamdy virus (Orthonairovirus: Nairoviridae), which were found to circulate in neighboring regions and are vectored by Haemaphysalis spp., Dermacenter spp., and Hyalomma spp. ticks. OBJECTIVES: The aim of the study was to examine ixodid ticks in Volga river delta for the presence of CCHFV, DHOV, Bhanja virus, Wad Medani virus, and Tamdy virus. MATERIAL AND METHODS: Ticks were collected in Volga river delta in 2017. We used molecular genetic methods for the detection and analysis of nucleic acids (PCR, sequencing, phylogenetic analysis). RESULTS: We detect CCHFV and DHOV RNA in H. marginatum ticks. The rate of infected H. marginatum ticks was 1.98% for CCHFV and 0.4% for DHOV. The results of genetic analysis showed that found DHOV strains are almost identical (99-100% in the M gene) and forms a separate genetic lineage alongside of Batken virus from Central Asia. At the same time, Bhanja virus, Wad Medani virus, and Tamdy virus were not found in ticks, collected in this region. CONCLUSIONS: DHOV is circulating in the natural foci of CCHF in the Volga river delta. The ratio of infection of H. marginatum with CCHFV and DHOV was determined for the first time.


Asunto(s)
Vectores Arácnidos/virología , Virus de la Fiebre Hemorrágica de Crimea-Congo/genética , Ixodidae/virología , Nairovirus/genética , Orbivirus/genética , Phlebovirus/genética , Animales , Infecciones por Bunyaviridae/epidemiología , Infecciones por Bunyaviridae/transmisión , Infecciones por Bunyaviridae/virología , Monitoreo Epidemiológico , Virus de la Fiebre Hemorrágica de Crimea-Congo/clasificación , Virus de la Fiebre Hemorrágica de Crimea-Congo/aislamiento & purificación , Fiebre Hemorrágica de Crimea/epidemiología , Fiebre Hemorrágica de Crimea/transmisión , Fiebre Hemorrágica de Crimea/virología , Humanos , Nairovirus/clasificación , Nairovirus/aislamiento & purificación , Orbivirus/clasificación , Orbivirus/aislamiento & purificación , Phlebovirus/clasificación , Phlebovirus/aislamiento & purificación , Filogenia , ARN Viral/genética , Infecciones por Reoviridae/epidemiología , Infecciones por Reoviridae/transmisión , Infecciones por Reoviridae/virología , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Ríos , Federación de Rusia/epidemiología
16.
Virus Genes ; 54(5): 729-732, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30069670

RESUMEN

Two virus strains, tentatively designated as ON-6/P/05 and ON-7/E/05, were isolated from blood samples of healthy cattle in the Yaeyama Islands, located in the southwestern-most region of Japan, in 2005. Ultrastructural observations of infected baby hamster (BHK-21) cells revealed that the viruses had features consistent with those of orbivirus. As with other orbiviruses, the viral genome consists of 10 double-stranded RNA segments. The full genome sequence of ON-6/P/05 was determined and shared high nucleotide and amino acid identities (90.07-98.22% nucleotide identity; 96.16-99.72% amino acid identity) with that of Sathuvachari virus (SVIV), a member of the species Sathuvachari virus of the genus Orbivirus, originally isolated from starlings collected in southern India in 1963. The sequence of segment two of ON-7/E/05 was identical to that of ON-6/P/05. The isolation of SVIV from cattle also indicated that the virus has a wider host range than previously thought. The potential pathogenicity of SVIV in domestic animals should be considered in future disease surveillance within its distribution range.


Asunto(s)
Bovinos/virología , Genoma Viral , Orbivirus/genética , Orbivirus/aislamiento & purificación , Animales , Línea Celular , Cricetinae , Femenino , Japón , Tipificación Molecular , Orbivirus/clasificación , Especificidad de la Especie
18.
Infect Genet Evol ; 47: 56-63, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-27838528

RESUMEN

Kemerovo virus (KEMV), a member of the Reoviridae family, Orbivirus genus, is transmitted by Ixodes ticks and can cause aseptic meningitis and meningoencephalitis. Recently, this virus was observed in certain provinces of European part of Russia, Ural, and Western and Eastern Siberia. However, the occurrence and genetic diversity of KEMV in Western Siberia remain poorly studied. Therefore, the aim of this work was to investigate the prevalence and genetic variability of KEMV in Ixodes ticks from Western Siberia. A total of 1958 Ixodes persulcatus, I. pavlovskyi ticks and their hybrids from Novosibirsk and Omsk provinces, Altai Republic (Russia) and East Kazakhstan province (Kazakhstan) were analyzed for the presence of KEMV and tick-borne encephalitis virus (TBEV) RNA. It was observed that the KEMV distribution area in Western Siberia was wider than originally thought and included Northern and Northeastern Altai in addition to the Omsk and Novosibirsk provinces. For the first time, this virus was found in Kazakhstan. The occurrence of KEMV was statistically lower than TBEV in most locations in Western Siberia. KEMV was found both in I. persulcatus and I. pavlovskyi ticks and in their hybrids. Notably, KEMV variants observed in the 2010s were genetically different from those isolated in the 1960s, which indicated the ongoing process of evolution of the Kemerovo virus group. Moreover, the possibility of reassortment for KEMV was demonstrated for the first time.


Asunto(s)
Ixodes/virología , Orbivirus/clasificación , Orbivirus/genética , Animales , Variación Genética , Kazajstán , Orbivirus/aislamiento & purificación , Filogenia , Reacción en Cadena de la Polimerasa , ARN Viral/análisis , ARN Viral/genética , Federación de Rusia , Siberia
19.
Viruses ; 8(5)2016 05 20.
Artículo en Inglés | MEDLINE | ID: mdl-27213426

RESUMEN

The discovery and characterisation of new mosquito-borne viruses provides valuable information on the biodiversity of vector-borne viruses and important insights into their evolution. In this study, a broad-spectrum virus screening system, based on the detection of long double-stranded RNA in inoculated cell cultures, was used to investigate the presence of novel viruses in mosquito populations of northern Australia. We detected and isolated a new virus (tentatively named Parry's Lagoon virus, PLV) from Culex annulirostris, Culex pullus, Mansonia uniformis and Aedes normanensis mosquitoes that shares genomic sequence similarities to Corriparta virus (CORV), a member of the Orbivirus genus of the family Reoviridae. Despite moderate to high (72.2% to 92.2%) amino acid identity across all proteins when compared to CORV, and demonstration of antigenic relatedness, PLV did not replicate in several vertebrate cell lines that were permissive to CORV. This striking phenotypic difference suggests that PLV has evolved to have a very restricted host range, indicative of a mosquito-only life cycle.


Asunto(s)
Culicidae/virología , Especificidad del Huésped , Orbivirus/aislamiento & purificación , Orbivirus/fisiología , Filogenia , Replicación Viral , Animales , Línea Celular , Orbivirus/clasificación , Orbivirus/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Vertebrados , Australia Occidental
20.
Arch Virol ; 160(12): 2965-77, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26350980

RESUMEN

Among the tick-borne orbiviruses (genus Orbivirus, family Reoviridae), 36 serotypes are currently classified within a single virus species, Great Island virus. In this study, we report the first characterization of a tick-borne orbivirus isolated from the tick Ixodes turdus in Japan, which we identified as a new member of the species Great Island virus. The virus isolate, designated Muko virus (MUV), replicated and induced cytopathic effects in BHK-21, Vero E6, and CCL-141 cells and caused high mortality in suckling mice after intracerebral inoculation. Full genome sequence analysis showed that MUV shared the greatest phylogenetic similarity with Tribec virus in terms of the amino acid sequences of all viral proteins except for outer capsid protein 1 (OC1; VP4 of MUV). Analysis of genome segment 9 in MUV detected an uninterrupted open reading frame that overlaps with VP6 (Hel), which putatively encodes a molecular and functional equivalent of NS4 from Great Island virus. Our study provides new insights into the geographic distribution, genetic diversity, and evolutionary history of the members of the species Great Island virus.


Asunto(s)
Vectores Arácnidos/virología , Ixodes/virología , Orbivirus/genética , Orbivirus/aislamiento & purificación , Infecciones por Reoviridae/virología , Animales , Línea Celular , Genoma Viral , Humanos , Japón , Ratones , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Orbivirus/clasificación , Filogenia , Proteínas Virales/genética
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