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1.
Genes (Basel) ; 15(7)2024 Jun 24.
Artículo en Inglés | MEDLINE | ID: mdl-39062609

RESUMEN

The blue whistling thrush (Myophonus caeruleus) is a bird belonging to the order Passeriformes and family Muscicapidae. M. caeruleus is widely distributed in China, Pakistan, India, and Myanmar and is a resident bird in the southern part of the Yangtze River in China and summer migratory bird in the northern part of the Yangtze River. At present, there are some controversies about the classification of M. caeruleus. We use complete mitochondrial genomes to provide insights into the phylogenetic position of M. caeruleus and its relationships among Muscicapidae. The mitochondrial genome (GenBank: MN564936) is 16,815 bp long and contains 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and a non-coding control region (D-loop). The thirteen PCGs started with GTG and ATG and ended with five types of stop codons. The nucleotide composition of T was 23.71%, that of C was 31.45%, that of A was 30.06%, and that of G was 14.78%. The secondary structures of 22 tRNAs were predicted, all of which could form typical cloverleaf structures. There were 24 mismatches, mainly G-U mismatches. Through phylogenetic tree reconstruction, it was found that Saxicola, Monticola, Oenanthe, and Phoenicurus were clustered into one clade, together with the sister group of Myophonus.


Asunto(s)
Genoma Mitocondrial , Filogenia , ARN de Transferencia , Animales , ARN de Transferencia/genética , Pájaros Cantores/genética , Pájaros Cantores/clasificación , ARN Ribosómico/genética , Composición de Base/genética , China
2.
Mol Phylogenet Evol ; 196: 108088, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38697377

RESUMEN

The nonrandom distribution of chromosomal characteristics and functional elements-genomic architecture-impacts the relative strengths and impacts of population genetic processes across the genome. Due to this relationship, genomic architecture has the potential to shape variation in population genetic structure across the genome. Population genetic structure has been shown to vary across the genome in a variety of taxa, but this body of work has largely focused on pairwise population genomic comparisons between closely related taxa. Here, we used whole genome sequencing of seven phylogeographically structured populations of a North American songbird, the Brown Creeper (Certhia americana), to determine the impacts of genomic architecture on phylogeographic structure variation across the genome. Using multiple methods to infer phylogeographic structure-ordination, clustering, and phylogenetic methods-we found that recombination rate variation explained a large proportion of phylogeographic structure variation. Genomic regions with low recombination showed phylogeographic structure consistent with the genome-wide pattern. In regions with high recombination, we found strong phylogeographic structure, but with discordant patterns relative to the genome-wide pattern. In regions with high recombination rate, we found that populations with small effective population sizes evolve relatively more rapidly than larger populations, leading to discordant signatures of phylogeographic structure. These results suggest that the interplay between recombination rate variation and effective population sizes shape the relative impacts of selection and genetic drift in different parts of the genome. Overall, the combined interactions of population genetic processes, genomic architecture, and effective population sizes shape patterns of variability in phylogeographic structure across the genome of the Brown Creeper.


Asunto(s)
Filogeografía , Recombinación Genética , Pájaros Cantores , Animales , Pájaros Cantores/genética , Pájaros Cantores/clasificación , Filogenia , Genética de Población , Variación Genética , América del Norte , Genoma/genética , Secuenciación Completa del Genoma
3.
Mol Ecol Resour ; 24(5): e13969, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38747336

RESUMEN

A major aim of evolutionary biology is to understand why patterns of genomic diversity vary within taxa and space. Large-scale genomic studies of widespread species are useful for studying how environment and demography shape patterns of genomic divergence. Here, we describe one of the most geographically comprehensive surveys of genomic variation in a wild vertebrate to date; the great tit (Parus major) HapMap project. We screened ca 500,000 SNP markers across 647 individuals from 29 populations, spanning ~30 degrees of latitude and 40 degrees of longitude - almost the entire geographical range of the European subspecies. Genome-wide variation was consistent with a recent colonisation across Europe from a South-East European refugium, with bottlenecks and reduced genetic diversity in island populations. Differentiation across the genome was highly heterogeneous, with clear 'islands of differentiation', even among populations with very low levels of genome-wide differentiation. Low local recombination rates were a strong predictor of high local genomic differentiation (FST), especially in island and peripheral mainland populations, suggesting that the interplay between genetic drift and recombination causes highly heterogeneous differentiation landscapes. We also detected genomic outlier regions that were confined to one or more peripheral great tit populations, probably as a result of recent directional selection at the species' range edges. Haplotype-based measures of selection were related to recombination rate, albeit less strongly, and highlighted population-specific sweeps that likely resulted from positive selection. Our study highlights how comprehensive screens of genomic variation in wild organisms can provide unique insights into spatio-temporal evolutionary dynamics.


Asunto(s)
Variación Genética , Polimorfismo de Nucleótido Simple , Pájaros Cantores , Animales , Pájaros Cantores/genética , Pájaros Cantores/clasificación , Genética de Población/métodos , Europa (Continente) , Passeriformes/genética , Passeriformes/clasificación , Haplotipos/genética , Recombinación Genética , Selección Genética
4.
Mol Phylogenet Evol ; 197: 108105, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38754709

RESUMEN

Rivers constitute an important biogeographic divide in vast areas of tropical rainforest, such as the Amazon and Congo Basins. Southeast Asia's rainforests are currently fragmented across islands divided by sea, which has long obscured their extensive history of terrestrial connectivity as part of a vast (but now submerged) subcontinent - Sundaland - during most of the Quaternary. The role of paleo-rivers in determining population structure in Sundaic rainforests at a time when these forests were connected remains little understood. We examined the coloration of museum skins and used the genomic DNA of museum samples and freshly-collected blood tissue of a pair of Sundaic songbird species, the pin-striped and bold-striped tit-babblers (Mixornis gularis and M. bornensis, respectively), to assess the genetic affinity of populations on small Sundaic islands that have largely been ignored by modern research. Our genomic and morphological results place the populations from the Anambas and Natuna Islands firmly within M. gularis from the Malay Peninsula in western Sundaland, even though some of these islands are geographically much closer to Borneo, where M. bornensis resides. Our results reveal genetic structure consistent with the course of Sundaic paleo-rivers and the location of the interfluvia they formed, and add to a small but growing body of evidence that rivers would have been of equal biogeographic importance in Sundaland's former connected forest landscape as they are in Amazonia and the Congo Basin today.


Asunto(s)
Ríos , Animales , Genética de Población , Passeriformes/genética , Passeriformes/clasificación , ADN Mitocondrial/genética , Filogenia , Filogeografía , Pájaros Cantores/genética , Pájaros Cantores/clasificación
5.
Proc Natl Acad Sci U S A ; 119(4)2022 01 25.
Artículo en Inglés | MEDLINE | ID: mdl-35058355

RESUMEN

Songbirds have one special accessory chromosome, the so-called germline-restricted chromosome (GRC), which is only present in germline cells and absent from all somatic tissues. Earlier work on the zebra finch (Taeniopygia guttata castanotis) showed that the GRC is inherited only through the female line-like the mitochondria-and is eliminated from the sperm during spermatogenesis. Here, we show that the GRC has the potential to be paternally inherited. Confocal microscopy using GRC-specific fluorescent in situ hybridization probes indicated that a considerable fraction of sperm heads (1 to 19%) in zebra finch ejaculates still contained the GRC. In line with these cytogenetic data, sequencing of ejaculates revealed that individual males from two families differed strongly and consistently in the number of GRCs in their ejaculates. Examining a captive-bred male hybrid of the two zebra finch subspecies (T. g. guttata and T. g. castanotis) revealed that the mitochondria originated from a castanotis mother, whereas the GRC came from a guttata father. Moreover, analyzing GRC haplotypes across nine castanotis matrilines, estimated to have diverged for up to 250,000 y, showed surprisingly little variability among GRCs. This suggests that a single GRC haplotype has spread relatively recently across all examined matrilines. A few diagnostic GRC mutations that arose since this inferred spreading suggest that the GRC has continued to jump across matriline boundaries. Our findings raise the possibility that certain GRC haplotypes could selfishly spread through the population via occasional paternal transmission, thereby outcompeting other GRC haplotypes that were limited to strict maternal inheritance, even if this was partly detrimental to organismal fitness.


Asunto(s)
Cromosomas , Células Germinativas , Herencia Paterna , Pájaros Cantores/genética , Animales , Análisis Citogenético , ADN Mitocondrial , Evolución Molecular , Femenino , Haplotipos , Masculino , Filogenia , Pájaros Cantores/clasificación , Espermatozoides
6.
Sci Rep ; 11(1): 11600, 2021 06 02.
Artículo en Inglés | MEDLINE | ID: mdl-34078943

RESUMEN

Sexual signals are archetypes of contingent evolution: hyper-diverse across species, often evolving fast and in unpredictable directions. It is unclear to which extent their evolutionary unpredictability weakens deterministic evolution, or takes place bounded by deterministic patterns of trait evolution. We compared the evolution of sound frequency in sexual signals (advertisement songs) and non-sexual social signals (calls) across > 500 genera of the crown songbird families. Contrary to the acoustic adaptation hypothesis, we found no evidence that forest species used lower sound frequencies in songs or calls. Consistent with contingent evolution in song, we found lower phylogenetic signal for the sound frequency of songs than calls, which suggests faster and less predictable evolution, and found unpredictable direction of evolution in lineages with longer songs, which presumably experience stronger sexual selection on song. Nonetheless, the most important deterministic pattern of sound frequency evolution-its negative association with body size-was stronger in songs than calls. This can be explained by songs being longer-range signals than most calls, and thus using sound frequencies that animals of a given size produce best at high amplitude. Results indicate that sexual selection can increase aspects of evolutionary contingency while strengthening, rather than weakening, deterministic patterns of evolution.


Asunto(s)
Adaptación Fisiológica , Evolución Biológica , Pájaros Cantores/fisiología , Vocalización Animal/fisiología , Acústica/instrumentación , Animales , Tamaño Corporal , Femenino , Masculino , Filogenia , Pájaros Cantores/clasificación , Sonido
7.
Mol Phylogenet Evol ; 162: 107206, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-34015447

RESUMEN

Several bird taxa have been recently described or elevated to full species and almost twice as many bird species than are currently recognized may exist. Defining species is one of the most basic and important issues in biological science because unknown or poorly defined species hamper subsequent studies. Here, we evaluate the species limits and evolutionary history of Tunchiornis ochraceiceps-a widespread forest songbird that occurs in the lowlands of Central America, Chocó and Amazonia-using an integrative approach that includes plumage coloration, morphometrics, vocalization and genomic data. The species has a relatively old crown age (~9 Ma) and comprises several lineages with little, if any, evidence of gene flow among them. We propose a taxonomic arrangement composed of four species, three with a plumage coloration diagnosis and one deeply divergent cryptic species. Most of the remaining lineages have variable but unfixed phenotypic characters despite their relatively old origin. This decoupling of genomic and phenotypic differentiation reveals a remarkable case of phenotypic conservatism, possibly due to strict habitat association. Lineages are geographically delimited by the main Amazonian rivers and the Andes, a pattern observed in studies of other understory upland forest Neotropical birds, although phylogenetic relationships and divergence times among populations are idiosyncratic.


Asunto(s)
Variación Genética , Genómica , Filogenia , Pájaros Cantores/clasificación , Pájaros Cantores/genética , Animales , Flujo Génico , Fenotipo
8.
Evolution ; 75(5): 1046-1060, 2021 05.
Artículo en Inglés | MEDLINE | ID: mdl-33724456

RESUMEN

Climatic niches describe the climatic conditions in which species can persist. Shifts in climatic niches have been observed to coincide with major climatic change, suggesting that species adapt to new conditions. We test the relationship between rates of climatic niche evolution and paleoclimatic conditions through time for 65 Old-World flycatcher species (Aves: Muscicapidae). We combine niche quantification for all species with dated phylogenies to infer past changes in the rates of niche evolution for temperature and precipitation niches. Paleoclimatic conditions were inferred independently using two datasets: a paleoelevation reconstruction and the mammal fossil record. We find changes in climatic niches through time, but no or weak support for a relationship between niche evolution rates and rates of paleoclimatic change for both temperature and precipitation niche and for both reconstruction methods. In contrast, the inferred relationship between climatic conditions and niche evolution rates depends on paleoclimatic reconstruction method: rates of temperature niche evolution are significantly negatively related to absolute temperatures inferred using the paleoelevation model but not those reconstructed from the fossil record. We suggest that paleoclimatic change might be a weak driver of climatic niche evolution in birds and highlight the need for greater integration of different paleoclimate reconstructions.


Asunto(s)
Cambio Climático , Ecosistema , Pájaros Cantores/clasificación , Altitud , Animales , Evolución Biológica , Filogenia , Pájaros Cantores/fisiología
9.
PLoS One ; 15(8): e0233627, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32804928

RESUMEN

We studied avian development in 49 to 153 species of temperate and tropical New World passerine birds to determine how growth rates, and incubation and nestling periods, varied in relation to other life-history traits. We collected growth data and generated unbiased mass and tarsus growth rate estimates (mass n = 92 species, tarsus n = 49 species), and measured incubation period (n = 151) and nestling period (n = 153), which we analyzed with respect to region, egg mass, adult mass, clutch size, parental care type, nest type, daily nest predation rate (DMR), and nest height. We investigated covariation of life-history and natural-history attributes with the four development traits after controlling for phylogeny. Species in our lowland tropical sample grew 20% (incubation period), 25% (mass growth rate), and 26% (tarsus growth rate) more slowly than in our temperate sample. Nestling period did not vary with respect to latitude, which suggests that tropical songbirds fledge in a less well-developed state than temperate species. Suboscine species typically exhibited slower embryonic and post-embryonic growth than oscine passerines regardless of their breeding region. This pattern of slow development in tropical species could reflect phylogenetic effects based on unknown physiological attributes. Time-dependent nest mortality was unrelated to nestling mass growth rate, tarsus growth rate, and incubation period, but was significantly associated with nestling period. This suggests that nest predation, the predominant cause of nest loss in songbirds, does not exert strong selection on physiologically constrained traits, such as embryonic and post-embryonic growth, among our samples of temperate and lowland tropical songbird species. Nestling period, which is evolutionarily more labile than growth rate, was significantly shorter in birds exposed to higher rates of nest loss and nesting at lower heights, among other traits. Differences in life-history variation across latitudes provide insight into how unique ecological characteristics of each region influence physiological processes of passerines, and thus, how they can shape the evolution of life histories. While development traits clearly vary with respect to latitude, trait distributions overlap broadly. Life-history and natural history associations differ for each development trait, which suggests that unique selective pressures or constraints influence the evolution of each trait.


Asunto(s)
Pájaros Cantores/crecimiento & desarrollo , Animales , Evolución Biológica , Clima , Tamaño de la Nidada , Análisis Discriminante , Ecosistema , Femenino , Rasgos de la Historia de Vida , Modelos Lineales , Masculino , Michigan , Modelos Biológicos , Comportamiento de Nidificación/fisiología , Oregon , Panamá , Filogenia , Conducta Predatoria/fisiología , Reproducción/fisiología , Selección Genética , Pájaros Cantores/clasificación , Pájaros Cantores/fisiología , Especificidad de la Especie , Tarso Animal/crecimiento & desarrollo , Clima Tropical
10.
Sci Rep ; 10(1): 9290, 2020 06 09.
Artículo en Inglés | MEDLINE | ID: mdl-32518318

RESUMEN

The Northern Wheatear (Oenanthe oenanthe, including the nominate and the two subspecies O. o. leucorhoa and O. o. libanotica) and the Seebohm's Wheatear (Oenanthe seebohmi) are today regarded as two distinct species. Before, all four taxa were regarded as four subspecies of the Northern Wheatear. Their classification has exclusively been based on ecological and morphological traits, while their molecular characterization is still missing. With this study, we used next-generation sequencing to assemble 117 complete mitochondrial genomes covering O. o. oenanthe, O. o. leucorhoa and O. seebohmi. We compared the resolution power of each individual mitochondrial marker and concatenated marker sets to reconstruct the phylogeny and estimate speciation times of three taxa. Moreover, we tried to identify the origin of migratory wheatears caught on Helgoland (Germany) and on Crete (Greece). Mitogenome analysis revealed two different ancient lineages that separated around 400,000 years ago. Both lineages consisted of a mix of subspecies and species. The phylogenetic trees, as well as haplotype networks are incongruent with the present morphology-based classification. Mitogenome could not distinguish these presumed species. The genetic panmixia among present populations and taxa might be the consequence of mitochondrial introgression between ancient wheatear populations.


Asunto(s)
Especiación Genética , Genoma Mitocondrial/genética , Pájaros Cantores/clasificación , Pájaros Cantores/genética , Migración Animal , Evolución Molecular , Alemania , Grecia , Haplotipos/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Mitocondrias/genética , Filogenia
11.
Mol Ecol ; 29(14): 2692-2706, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32542783

RESUMEN

Quaternary climate oscillations are a well-known driver of animal diversification, but their effects are most well studied in areas where glaciations lead to habitat fragmentation. In large areas of the planet, however, glaciations have had the opposite effect, but here their impacts are much less well understood. This is especially true in Southeast Asia, where cyclical changes in land distribution have generated enormous land expansions during glacial periods. In this study, we selected a panel of five songbird species complexes covering a range of ecological specificities to investigate the effects Quaternary land bridges have had on the connectivity of Southeast Asian forest biota. Specifically, we combined morphological and bioacoustic analysis with an arsenal of population genomic and modelling approaches applied to thousands of genome-wide DNA markers across a total of more than 100 individuals. Our analyses show that species dependent on forest understorey exhibit deep differentiation between Borneo and western Sundaland, with no evidence of gene flow during the land bridges accompanying the last 1-2 ice ages. In contrast, dispersive canopy species and habitat generalists have experienced more recent gene flow. Our results argue that there remains much cryptic species-level diversity to be discovered in Southeast Asia even in well-known animal groups such as birds, especially in nondispersive forest understorey inhabitants. We also demonstrate that Quaternary land bridges have not been equally suitable conduits of gene flow for all species complexes and that life history is a major factor in predicting relative population divergence time across Quaternary climate fluctuations.


Asunto(s)
Evolución Molecular , Flujo Génico , Genética de Población , Pájaros Cantores , Animales , Asia Sudoriental , Borneo , Ecosistema , Filogenia , Pájaros Cantores/clasificación , Pájaros Cantores/genética
12.
Artículo en Inglés | MEDLINE | ID: mdl-32283178

RESUMEN

Birds naturally maintain high glucose concentrations in the blood and tissues, even when relying on fat to meet the metabolic demands of flight or thermogenesis. One possibility is that high glucose levels might be needed to deal with these metabolic demands. Thus, we hypothesized that birds chronically exposed to colder temperatures and higher elevations have higher circulating glucose and tissue free glucose and glycogen compared to conspecifics living at warmer temperatures and lower elevations. Adult House Sparrows (Passer domesticus) and House Finches (Haemorhous mexicanus) were captured from Phoenix, AZ (340 m elevation), and Albuquerque, NM (1600 m elevation), during the summer and winter months. We measured plasma glucose, as well as free glucose and glycogen from multiple tissues. In general, high elevation and colder temperatures were associated with higher tissue glycogen and higher free glucose concentrations in the brain. These findings indicate that glucose and glycogen are subject to seasonal phenotypic flexibility as well as geographic variations that may relate to local food availability and abundance.


Asunto(s)
Altitud , Glucosa/metabolismo , Glucógeno/metabolismo , Estaciones del Año , Pájaros Cantores/metabolismo , Animales , Encéfalo/metabolismo , Pájaros Cantores/clasificación , Especificidad de la Especie , Termogénesis
13.
J Ethnobiol Ethnomed ; 16(1): 16, 2020 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-32228669

RESUMEN

BACKGROUND: This study aimed to analyze the chain and dynamics of the trade of wild birds between keepers and traders in an area of northeast Brazil. Profit from the purchase and sale of these animals in the trade chain was also estimated. METHODS: The information was obtained through interviews with direct participants in the wild bird trade chain. RESULTS: We recorded a total of 34 bird species involved in illegal trade. In general, the purchase and sale values of songbirds are associated with the attractiveness and songs of the birds. Regarding the commercial potential of the species, those with high numbers of traded individuals had higher average purchase values and, especially, sale values. Birds with lower purchase values showed higher sale profits and were sold in large numbers. The purchase and sale values of songbirds in the present study show a significant economic return for those involved in this activity. CONCLUSIONS: The results of this study may provide data to support future studies on the conservation of wild birds, assisting in monitoring illegal trade, a persistent problem in the region studied.


Asunto(s)
Comercio , Conservación de los Recursos Naturales , Crimen , Pájaros Cantores , Animales , Animales Salvajes , Brasil , Pájaros Cantores/clasificación
14.
PLoS One ; 15(3): e0230151, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32191719

RESUMEN

The Mediterranean Basin represents a Global Biodiversity Hotspot where many organisms show high inter- and intraspecific differentiation. Extant phylogeographic patterns of terrestrial circum-Mediterranean faunas were mainly shaped through Pleistocene range shifts and range fragmentations due to retreat into different glacial refugia. Thus, several extant Mediterranean bird species have diversified by surviving glaciations in different hospitable refugia and subsequently expanded their distribution ranges during the Holocene. Such a scenario was also suggested for the Eurasian Wren (Nannus troglodytes) despite the lack of genetic data for most Mediterranean subspecies. Our phylogenetic multi-locus analysis comprised 18 out of 28 currently accepted subspecies of N. troglodytes, including all but one subspecies which are present in the Mediterranean Basin. The resulting phylogenetic reconstruction dated the onset of the entire Holarctic radiation of three Nannus species to the early Pleistocene. In the Eurasian Wren, two North African subspecies represented separate basal lineages from the Maghreb (N. t. kabylorum) and from the Libyan Cyrenaica (N. t. juniperi), being only distantly related to other Mediterranean populations. Although N. troglodytes appeared to be paraphyletic with respect to the Nearctic Winter Wren (N. hiemalis), respective nodes did not receive strong statistical support. In contrast, paraphyly of the Ibero-Maghrebian taxon N. t. kabylorum was strongly supported. Southern Iberian populations of N. t. kabylorum did not clade with Maghrebian populations of the same subspecies but formed a sister clade to a highly diverse European clade (including nominate N. t. troglodytes and eight further taxa). In accordance with a pattern also found in other birds, Eurasian populations were split into a western clade (Europe, Caucasus) and an eastern clade (Central Asia, Sino-Himalayas, East Asia). This complex phylogeographic pattern revealed cryptic diversification in N. troglodytes, especially in the Iberio-Maghrebian region.


Asunto(s)
Filogeografía , Pájaros Cantores/clasificación , África del Norte , Animales , Biodiversidad , Evolución Biológica , ADN Mitocondrial/genética , Europa (Continente) , Marcadores Genéticos/genética , Variación Genética , Filogenia , Pájaros Cantores/genética
15.
Science ; 367(6474): 167-170, 2020 01 10.
Artículo en Inglés | MEDLINE | ID: mdl-31919216

RESUMEN

Birds are the best-known animal class, with only about five or six new species descriptions per year since 1999. Integrating genomic and phenotypic research with arduous fieldwork in remote regions, we describe five new songbird species and five new subspecies from a small area near Sulawesi, Indonesia, all collected in a single 6-week expedition. Two factors contributed to the description of this large number of species from such a small geographic area: (i) Knowledge of Quaternary Period land connections helped pinpoint isolated islands likely to harbor substantial endemism and (ii) studying accounts of historic collectors such as Alfred Wallace facilitated the identification of undercollected islands. Our findings suggest that humans' understanding of biogeographically complex regions such as Wallacea remains incomplete.


Asunto(s)
Biodiversidad , Pájaros Cantores/clasificación , Animales , Extinción Biológica , Indonesia , Islas , Filogeografía
16.
Mol Ecol Resour ; 20(2): 560-578, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31821695

RESUMEN

The superb fairy-wren, Malurus cyaneus, is one of the most iconic Australian passerine species. This species belongs to an endemic Australasian clade, Meliphagides, which diversified early in the evolution of the oscine passerines. Today, the oscine passerines comprise almost half of all avian species diversity. Despite the rapid increase of available bird genome assemblies, this part of the avian tree has not yet been represented by a high-quality reference. To rectify that, we present the first high-quality genome assembly of a Meliphagides representative: the superb fairy-wren. We combined Illumina shotgun and mate-pair sequences, PacBio long-reads, and a genetic linkage map from an intensively sampled pedigree of a wild population to generate this genome assembly. Of the final assembled 1.07-Gb genome, 975 Mb (90.4%) was anchored onto 25 pseudochromosomes resulting in a final superscaffold N50 of 68.11 Mb. This high-quality bird genome assembly is one of only a handful which is also accompanied by a genetic map and recombination landscape. In comparison to other pedigree-based bird genetic maps, we find that the fairy-wren genetic map more closely resembles those of Taeniopygia guttata and Parus major maps, unlike the Ficedula albicollis map which more closely resembles that of Gallus gallus. Lastly, we also provide a predictive gene and repeat annotation of the genome assembly. This new high-quality, annotated genome assembly will be an invaluable resource not only regarding the superb fairy-wren species and relatives but also broadly across the avian tree by providing a novel reference point for comparative genomic analyses.


Asunto(s)
Genoma , Pájaros Cantores/clasificación , Pájaros Cantores/genética , Animales , Australia , Aves/clasificación , Aves/genética , Ligamiento Genético , Filogenia
17.
Philos Trans R Soc Lond B Biol Sci ; 375(1789): 20180406, 2020 01 06.
Artículo en Inglés | MEDLINE | ID: mdl-31735157

RESUMEN

Humans and songbirds learn to sing or speak by listening to acoustic models, forming auditory templates, and then learning to produce vocalizations that match the templates. These taxa have evolved specialized telencephalic pathways to accomplish this complex form of vocal learning, which has been reported for very few other taxa. By contrast, the acoustic structure of most animal vocalizations is produced by species-specific vocal motor programmes in the brainstem that do not require auditory feedback. However, many mammals and birds can learn to fine-tune the acoustic features of inherited vocal motor patterns based upon listening to conspecifics or noise. These limited forms of vocal learning range from rapid alteration based on real-time auditory feedback to long-term changes of vocal repertoire and they may involve different mechanisms than complex vocal learning. Limited vocal learning can involve the brainstem, mid-brain and/or telencephalic networks. Understanding complex vocal learning, which underpins human speech, requires careful analysis of which species are capable of which forms of vocal learning. Selecting multiple animal models for comparing the neural pathways that generate these different forms of learning will provide a richer view of the evolution of complex vocal learning and the neural mechanisms that make it possible. This article is part of the theme issue 'What can animal communication teach us about human language?'


Asunto(s)
Aprendizaje/clasificación , Aprendizaje/fisiología , Vocalización Animal/clasificación , Vocalización Animal/fisiología , Animales , Vías Auditivas/fisiología , Percepción Auditiva , Aves/fisiología , Encéfalo/fisiología , Quirópteros/fisiología , Retroalimentación Sensorial/fisiología , Humanos , Vías Nerviosas/fisiología , Pájaros Cantores/clasificación , Habla
18.
Sci Rep ; 9(1): 20248, 2019 12 27.
Artículo en Inglés | MEDLINE | ID: mdl-31882957

RESUMEN

Each year, billions of songbirds cross large ecological barriers during their migration. Understanding how they perform this incredible task is crucial to predict how global change may threaten the safety of such journeys. Earlier studies based on radar suggested that most songbirds cross deserts in intermittent flights at high altitude, stopping in the desert during the day, while recent tracking with light loggers suggested diurnal prolongation of nocturnal flights and common non-stop flights for some species. We analyzed light intensity and temperature data obtained from geolocation loggers deployed on 130 individuals of ten migratory songbird species, and show that a large variety of strategies for crossing deserts exists between, but also sometimes within species. Diurnal stopover in the desert is a common strategy in autumn, while most species prolonged some nocturnal flights into the day. Non-stop flights over the desert occurred more frequently in spring than in autumn, and more frequently in foliage gleaners. Temperature recordings suggest that songbirds crossed deserts with flight bouts performed at various altitudes according to species and season, along a gradient ranging from low above ground in autumn to probably >2000 m above ground level, and possibly at higher altitude in spring. High-altitude flights are therefore not the general rule for crossing deserts in migrant songbirds. We conclude that a diversity of migration strategies exists for desert crossing among songbirds, with variations between but also within species.


Asunto(s)
Migración Animal/fisiología , Clima Desértico , Ambiente , Vuelo Animal/fisiología , Pájaros Cantores/fisiología , Altitud , Animales , Ritmo Circadiano/fisiología , Sistemas de Información Geográfica , Luz , Estaciones del Año , Pájaros Cantores/clasificación , Especificidad de la Especie , Temperatura , Factores de Tiempo
19.
Sci Rep ; 9(1): 17002, 2019 11 18.
Artículo en Inglés | MEDLINE | ID: mdl-31740690

RESUMEN

Ecdysteroids (arthropod molting hormones) play an important role in the development and sexual maturation of arthropods, and they have been shown to have anabolic and "energizing" effect in higher vertebrates. The aim of this study was to assess ecdysteroid diversity, levels according to bird species and months, as well as to observe the molting status of hard ticks (Acari: Ixodidae) infesting the birds. Therefore, blood samples and ticks were collected from 245 birds (244 songbirds and a quail). Mass spectrometric analyses showed that 15 ecdysteroids were regularly present in the blood samples. Molting hormones biologically most active in insects (including 20-hydroxyecdysone [20E], 2deoxy-20E, ajugasterone C and dacryhainansterone) reached different levels of concentration according to bird species and season. Similarly to ecdysteroids, the seasonal presence of affected, apolytic ticks peaked in July and August. In conclusion, this study demonstrates the presence of a broad range and high concentrations of ecdysteroids in the blood stream of wild-living passerine birds. These biologically active, anabolic compounds might possibly contribute to the known high metabolic rate of songbirds.


Asunto(s)
Animales Salvajes/sangre , Ecdisona/sangre , Ecdisteroides/sangre , Pájaros Cantores/sangre , Animales , Animales Salvajes/parasitología , Artrópodos/crecimiento & desarrollo , Artrópodos/metabolismo , Ecdisona/química , Ecdisteroides/química , Ecdisterona/análogos & derivados , Ecdisterona/sangre , Ecdisterona/química , Ecdisterona/metabolismo , Interacciones Huésped-Parásitos , Ixodidae/crecimiento & desarrollo , Ixodidae/fisiología , Estructura Molecular , Muda , Estaciones del Año , Pájaros Cantores/clasificación , Pájaros Cantores/parasitología , Especificidad de la Especie
20.
PLoS Biol ; 17(10): e3000478, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31639139

RESUMEN

Genetic data indicate differences in speciation rate across latitudes, but underlying causes have been difficult to assess because a critical phase of the speciation process is initiated in allopatry, in which, by definition, individuals from different taxa do not interact. We conducted song playback experiments between 109 related pairs of mostly allopatric bird species or subspecies in Amazonia and North America to compare the rate of evolution of male discrimination of songs. Relative to local controls, the number of flyovers and approach to the speaker were higher in Amazonia. We estimate that responses to songs of relatives are being lost about 6 times more slowly in Amazonia than in North America. The slow loss of response holds even after accounting for differences in song frequency and song length. Amazonian species with year-round territories are losing aggressive responses especially slowly. We suggest the presence of many species and extensive interspecific territoriality favors recognition of songs sung by sympatric heterospecifics, which results in a broader window of recognition and hence an ongoing response to novel similar songs. These aggressive responses should slow the establishment of sympatry between recently diverged forms. If male responses to novel allopatric taxa reflect female responses, then premating reproductive isolation is also evolving more slowly in Amazonia. The findings are consistent with previously demonstrated slower recent rates of expansion of sister taxa into sympatry, slower rates of evolution of traits important for premating isolation, and slower rates of speciation in general in Amazonia than in temperate North America.


Asunto(s)
Especiación Genética , Filogenia , Reproducción/genética , Pájaros Cantores/clasificación , Vocalización Animal/fisiología , Animales , Brasil , Canadá , Femenino , Masculino , Perú , Filogeografía , Pájaros Cantores/genética , Simpatría , Estados Unidos , Grabación en Video
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