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1.
FEBS J ; 290(12): 3258-3269, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-36727297

RESUMEN

The pyruvate oxidases from Escherichia coli (EcPOX) and Lactobacillus plantarum (LpPOX) are both thiamin-dependent flavoenzymes. Their sequence and structure are closely related, and they catalyse similar reactions-but they differ in their activity pattern: LpPOX is always highly active, EcPOX only when activated by lipids or limited proteolysis, both involving the protein's C-terminal 23 residues (the 'α-peptide'). Here, we relate the redox-induced infrared (IR) difference spectrum of EcPOX to its unusual activation mechanism. The IR difference spectrum of EcPOX is marked by contributions from the protein backbone, reflecting major conformational changes. A rare sulfhydryl (-SH) difference signal indicates changes in the vicinity of cysteines. We could pin the Cys-SH difference signal to Cys88 and Cys494, both being remote from the moving α-peptide and the redox-active flavin cofactor. Yet, when the α-peptide is proteolytically removed, the Cys-SH difference signal disappears, together with several difference signals in the amide range. The remaining IR signature of the permanently activated EcPOXΔ23 is strikingly similar to the simpler signature of LpPOX. The loss of the α-peptide 'transforms' the catalytically complex EcPOX into the catalytically 'simpler' LpPOX.


Asunto(s)
Cisteína , Escherichia coli , Escherichia coli/metabolismo , Cisteína/metabolismo , Piruvato Oxidasa/genética , Piruvato Oxidasa/química , Piruvato Oxidasa/metabolismo , Flavinas/metabolismo , Oxidación-Reducción
2.
J Bacteriol ; 203(24): e0043921, 2021 11 19.
Artículo en Inglés | MEDLINE | ID: mdl-34606370

RESUMEN

Streptococcus pneumoniae invades a myriad of host tissues following efficient breaching of cellular barriers. However, strategies adopted by pneumococcus for evasion of host intracellular defenses governing successful transcytosis across host cellular barriers remain elusive. In this study, using brain endothelium as a model host barrier, we observed that pneumococcus containing endocytic vacuoles (PCVs), formed following S. pneumoniae internalization into brain microvascular endothelial cells (BMECs), undergo early maturation and acidification, with a major subset acquiring lysosome-like characteristics. Exploration of measures that would preserve pneumococcal viability in the lethal acidic pH of these lysosome-like vacuoles revealed a critical role of the two-component system response regulator, CiaR, which was previously implicated in induction of acid tolerance response. Pyruvate oxidase (SpxB), a key sugar-metabolizing enzyme that catalyzes oxidative decarboxylation of pyruvate to acetyl phosphate, was found to contribute to acid stress tolerance, presumably via acetyl phosphate-mediated phosphorylation and activation of CiaR, independent of its cognate kinase CiaH. Hydrogen peroxide, the by-product of an SpxB-catalyzed reaction, was also found to improve pneumococcal intracellular survival by oxidative inactivation of lysosomal cysteine cathepsins, thus compromising the degradative capacity of the host lysosomes. As expected, a ΔspxB mutant was found to be significantly attenuated in its ability to survive inside the BMEC endocytic vacuoles, reflecting its reduced transcytosis ability. Collectively, our studies establish SpxB as an important virulence determinant facilitating pneumococcal survival inside host cells, ensuring successful trafficking across host cellular barriers. IMPORTANCE Host cellular barriers have innate immune defenses to restrict microbial passage into sterile compartments. Here, by focusing on the blood-brain barrier endothelium, we investigated mechanisms that enable Streptococcus pneumoniae to traverse through host barriers. Pyruvate oxidase, a pneumococcal sugar-metabolizing enzyme, was found to play a crucial role in this via generation of acetyl phosphate and hydrogen peroxide. A two-pronged approach consisting of acetyl phosphate-mediated activation of acid tolerance response and hydrogen peroxide-mediated inactivation of lysosomal enzymes enabled pneumococci to maintain viability inside the degradative vacuoles of the brain endothelium for successful transcytosis across the barrier. Thus, pyruvate oxidase is a key virulence determinant and can potentially serve as a viable candidate for therapeutic interventions for better management of invasive pneumococcal diseases.


Asunto(s)
Endotelio Vascular/metabolismo , Viabilidad Microbiana , Piruvato Oxidasa/metabolismo , Streptococcus pneumoniae/enzimología , Transcitosis/fisiología , Barrera Hematoencefálica , Células Cultivadas , Regulación Bacteriana de la Expresión Génica , Regulación Enzimológica de la Expresión Génica , Humanos , Piruvato Oxidasa/genética , Streptococcus pneumoniae/genética , Streptococcus pneumoniae/metabolismo
3.
Mol Oral Microbiol ; 36(5): 267-277, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-34314577

RESUMEN

Streptococcal pyruvate oxidase (SpxB) is a hydrogen peroxide-generating enzyme and plays a critical role in Streptococcus sanguinis interspecies interactions, but less is known about its biochemistry. We examined SpxB subcellular localization using protein fractionation and microscopy and found SpxB to be primarily cytoplasmic, but a small portion is also membrane associated. Potential post-translational modifications of SpxB were determined using coimmunoprecipitation and mass spectrometry. Two mutant strains were constructed to further validate the presence of predicted site-specific post-translational modifications. These site mutated SpxB proteins exhibited reduced solubility in vivo, which likely contributes to the observed phenotypic changes in colony morphology, bacterial growth, and H2 O2 production. Overall, our data suggest that SpxB post-translational modifications likely play a major role to regulate SpxB function in S. sanguinis.


Asunto(s)
Piruvato Oxidasa , Streptococcus sanguis , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Peróxido de Hidrógeno/metabolismo , Procesamiento Proteico-Postraduccional , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Solubilidad , Streptococcus sanguis/genética , Streptococcus sanguis/metabolismo
4.
Appl Environ Microbiol ; 87(13): e0048721, 2021 06 11.
Artículo en Inglés | MEDLINE | ID: mdl-33863707

RESUMEN

Altering metabolic flux at a key branch point in metabolism has commonly been accomplished through gene knockouts or by modulating gene expression. An alternative approach to direct metabolic flux preferentially toward a product is decreasing the activity of a key enzyme through protein engineering. In Escherichia coli, pyruvate can accumulate from glucose when carbon flux through the pyruvate dehydrogenase complex is suppressed. Based on this principle, 16 chromosomally expressed AceE variants were constructed in E. coli C and compared for growth rate and pyruvate accumulation using glucose as the sole carbon source. To prevent conversion of pyruvate to other products, the strains also contained deletions in two nonessential pathways: lactate dehydrogenase (ldhA) and pyruvate oxidase (poxB). The effect of deleting phosphoenolpyruvate synthase (ppsA) on pyruvate assimilation was also examined. The best pyruvate-accumulating strains were examined in controlled batch and continuous processes. In a nitrogen-limited chemostat process at steady-state growth rates of 0.15 to 0.28 h-1, an engineered strain expressing the AceE[H106V] variant accumulated pyruvate at a yield of 0.59 to 0.66 g pyruvate/g glucose with a specific productivity of 0.78 to 0.92 g pyruvate/g cells·h. These results provide proof of concept that pyruvate dehydrogenase complex variants can effectively shift carbon flux away from central carbon metabolism to allow pyruvate accumulation. This approach can potentially be applied to other key enzymes in metabolism to direct carbon toward a biochemical product. IMPORTANCE Microbial production of biochemicals from renewable resources has become an efficient and cost-effective alternative to traditional chemical synthesis methods. Metabolic engineering tools are important for optimizing a process to perform at an economically feasible level. This study describes an additional tool to modify central metabolism and direct metabolic flux to a product. We have shown that variants of the pyruvate dehydrogenase complex can direct metabolic flux away from cell growth to increase pyruvate production in Escherichia coli. This approach could be paired with existing strategies to optimize metabolism and create industrially relevant and economically feasible processes.


Asunto(s)
Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Escherichia coli/metabolismo , Complejo Piruvato Deshidrogenasa/genética , Complejo Piruvato Deshidrogenasa/metabolismo , Ácido Pirúvico/metabolismo , Acetilcoenzima A/metabolismo , Escherichia coli/genética , L-Lactato Deshidrogenasa/genética , Ingeniería Metabólica , Mutación , Fosfotransferasas (Aceptores Pareados)/genética , Piruvato Oxidasa/genética
5.
BMC Microbiol ; 20(1): 128, 2020 05 24.
Artículo en Inglés | MEDLINE | ID: mdl-32448120

RESUMEN

BACKGROUND: Pyruvate oxidase (Pox) is an important enzyme in bacterial metabolism for increasing ATP production and providing a fitness advantage via hydrogen peroxide production. However, few Pox enzymes have been characterized from bacterial species. The tetrameric non-hydrogen-peroxide producing Pox from E. coli is activated by phospholipids, which is important for its function in vivo. RESULTS: We characterized the hydrogenperoxide-producing Pox from L. delbrueckii strain STYM1 and showed it is specifically activated by phosphotidylethanolamine (16:0-18:1), but not by phosphotidylcholine or phosphotidylglycerol. This activation is a mixture of K- and V-type activation as both km and enzyme turnover are altered. Furthermore, we demonstrated that the L. delbrueckii Pox forms pentamers and either decamers or dimers of pentamers in solution, which is different from other characterized Pox enzymes. Lastly, we generated a C-terminal truncation mutant that was only weakly activated by phosphotidylethanolamine, which suggests the C-terminus is important for lipid activation. CONCLUSIONS: To our knowledge this is the first known hydrogenperoxide-producing Pox enzyme that is activated by phospholipids. Our results suggest that there are substantial differences between Pox enzymes from different bacterial species, which could be important for their role in biological systems as well as in the development of Pox-based biosensors.


Asunto(s)
Lactobacillus delbrueckii/enzimología , Fosfatidiletanolaminas/metabolismo , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Activación Enzimática , Regulación Bacteriana de la Expresión Génica , Regulación Enzimológica de la Expresión Génica , Peróxido de Hidrógeno/metabolismo , Lactobacillus delbrueckii/genética , Mutación , Multimerización de Proteína , Piruvato Oxidasa/química
6.
ISME J ; 14(5): 1074-1088, 2020 05.
Artículo en Inglés | MEDLINE | ID: mdl-31988475

RESUMEN

Many commensal oral streptococci generate H2O2 via pyruvate oxidase (SpxB) to inhibit the growth of competing bacteria like Streptococcus mutans, a major cariogenic species. In Streptococcus sanguinis SK36 (SK36) and Streptococcus gordonii DL1 (DL1), spxB expression and H2O2 release are subject to carbon catabolite repression by the catabolite control protein A (CcpA). Surprisingly, ccpA deletion mutants of SK36 and DL1 fail to inhibit S. mutans despite their production of otherwise inhibitory levels of H2O2. Using H2O2-deficient spxB deletion mutants of SK36 and DL1, it was subsequently discovered that both strains confer protection in trans to other bacteria when H2O2 is added exogenously. This protective effect depends on the direct detoxification of H2O2 by the release of pyruvate. The pyruvate dependent protective effect is also present in other spxB-encoding streptococci, such as the pneumococcus, but is missing from spxB-negative species like S. mutans. Targeted and transposon-based mutagenesis revealed Nox (putative H2O-forming NADH dehydrogenase) as an essential component required for pyruvate release and oxidative protection, while other genes such as sodA and dps play minor roles. Furthermore, pyruvate secretion is only detectable in aerobic growth conditions at biofilm-like cell densities and is responsive to CcpA-dependent catabolite control. This ability of spxB-encoding streptococci reveals a new facet of the competitive interactions between oral commensals and pathobionts and provides a mechanistic basis for the variable levels of inhibitory potential observed among H2O2-producing strains of commensal oral streptococci.


Asunto(s)
Peróxido de Hidrógeno/metabolismo , Ácido Pirúvico/metabolismo , Streptococcus/fisiología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Biopelículas/crecimiento & desarrollo , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Streptococcus gordonii/genética , Streptococcus gordonii/metabolismo , Streptococcus mutans , Streptococcus pneumoniae , Streptococcus sanguis/genética , Streptococcus sanguis/crecimiento & desarrollo , Streptococcus sanguis/metabolismo , Simbiosis
7.
Nature ; 573(7775): 609-613, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31534226

RESUMEN

The underlying molecular mechanisms of cooperativity and allosteric regulation are well understood for many proteins, with haemoglobin and aspartate transcarbamoylase serving as prototypical examples1,2. The binding of effectors typically causes a structural transition of the protein that is propagated through signalling pathways to remote sites and involves marked changes on the tertiary and sometimes even the quaternary level1-5. However, the origin of these signals and the molecular mechanism of long-range signalling at an atomic level remain unclear5-8. The different spatial scales and timescales in signalling pathways render experimental observation challenging; in particular, the positions and movement of mobile protons cannot be visualized by current methods of structural analysis. Here we report the experimental observation of fluctuating low-barrier hydrogen bonds as switching elements in cooperativity pathways of multimeric enzymes. We have observed these low-barrier hydrogen bonds in ultra-high-resolution X-ray crystallographic structures of two multimeric enzymes, and have validated their assignment using computational calculations. Catalytic events at the active sites switch between low-barrier hydrogen bonds and ordinary hydrogen bonds in a circuit that consists of acidic side chains and water molecules, transmitting a signal through the collective repositioning of protons by behaving as an atomistic Newton's cradle. The resulting communication synchronizes catalysis in the oligomer. Our studies provide several lines of evidence and a working model for not only the existence of low-barrier hydrogen bonds in proteins, but also a connection to enzyme cooperativity. This finding suggests new principles of drug and enzyme design, in which sequences of residues can be purposefully included to enable long-range communication and thus the regulation of engineered biomolecules.


Asunto(s)
Modelos Moleculares , Transcetolasa/química , Transcetolasa/metabolismo , Dominio Catalítico , Cristalografía por Rayos X , Escherichia coli/química , Escherichia coli/enzimología , Humanos , Enlace de Hidrógeno , Lactobacillus plantarum/enzimología , Lactobacillus plantarum/genética , Simulación de Dinámica Molecular , Mutación , Estructura Terciaria de Proteína , Piruvato Oxidasa/química , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Transcetolasa/genética
8.
Chembiochem ; 20(13): 1672-1677, 2019 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-30866142

RESUMEN

Chorismate and isochorismate constitute branch-point intermediates in the biosynthesis of many aromatic metabolites in microorganisms and plants. To obtain unnatural compounds, we modified the route to menaquinone in Escherichia coli. We propose a model for the binding of isochorismate to the active site of MenD ((1R,2S, 5S,6S)-2-succinyl-5-enolpyruvyl-6-hydroxycyclohex-3-ene-1-carboxylate (SEPHCHC) synthase) that explains the outcome of the native reaction with α-ketoglutarate. We have rationally designed variants of MenD for the conversion of several isochorismate analogues. The double-variant Asn117Arg-Leu478Thr preferentially converts (5S,6S)-5,6-dihydroxycyclohexa-1,3-diene-1-carboxylate (2,3-trans-CHD), the hydrolysis product of isochorismate, with a >70-fold higher ratio than that for the wild type. The single-variant Arg107Ile uses (5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxylate (2,3-trans-CHA) as substrate with >6-fold conversion compared to wild-type MenD. The novel compounds have been made accessible in vivo (up to 5.3 g L-1 ). Unexpectedly, as the identified residues such as Arg107 are highly conserved (>94 %), some of the designed variations can be found in wild-type SEPHCHC synthases from other bacteria (Arg107Lys, 0.3 %). This raises the question for the possible natural occurrence of as yet unexplored branches of the shikimate pathway.


Asunto(s)
Ácidos Ciclohexanocarboxílicos/metabolismo , Proteínas de Escherichia coli/metabolismo , Piruvato Oxidasa/metabolismo , Dominio Catalítico , Ácido Corísmico/química , Ácido Corísmico/metabolismo , Escherichia coli/enzimología , Escherichia coli/metabolismo , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Simulación del Acoplamiento Molecular , Mutación , Unión Proteica , Ingeniería de Proteínas , Piruvato Oxidasa/química , Piruvato Oxidasa/genética , Especificidad por Sustrato
9.
Biochem J ; 475(22): 3651-3667, 2018 11 30.
Artículo en Inglés | MEDLINE | ID: mdl-30341164

RESUMEN

The bacterial enzyme MenD, or 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) synthase, catalyzes an essential Stetter reaction in menaquinone (vitamin K2) biosynthesis via thiamine diphosphate (ThDP)-bound tetrahedral post-decarboxylation intermediates. The detailed mechanism of this intermediate chemistry, however, is still poorly understood, but of significant interest given that menaquinone is an essential electron transporter in many pathogenic bacteria. Here, we used site-directed mutagenesis, enzyme kinetic assays, and protein crystallography to reveal an active-inactive intermediate equilibrium in MenD catalysis and its modulation by two conserved active site arginine residues. We observed that these conserved residues play a key role in shifting the equilibrium to the active intermediate by orienting the C2-succinyl group of the intermediates through strong ionic hydrogen bonding. We found that when this interaction is moderately weakened by amino acid substitutions, the resulting proteins are catalytically competent with the C2-succinyl group taking either the active or the inactive orientation in the post-decarboxylation intermediate. When this hydrogen-bonding interaction was strongly weakened, the succinyl group was re-oriented by 180° relative to the native intermediate, resulting in the reversal of the stereochemistry at the reaction center that disabled catalysis. Interestingly, this inactive intermediate was formed with a distinct kinetic behavior, likely as a result of a non-native mode of enzyme-substrate interaction. The mechanistic insights gained from these findings improve our understanding of the new ThDP-dependent catalysis. More importantly, the non-native-binding site of the inactive MenD intermediate uncovered here provides a new target for the development of antibiotics.


Asunto(s)
Arginina/genética , Dominio Catalítico , Proteínas de Escherichia coli/genética , Piruvato Oxidasa/genética , Vitamina K 2/metabolismo , Arginina/química , Arginina/metabolismo , Biocatálisis , Cristalografía por Rayos X , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Cinética , Simulación del Acoplamiento Molecular , Mutagénesis Sitio-Dirigida , Mutación Missense , Unión Proteica , Conformación Proteica , Piruvato Oxidasa/química , Piruvato Oxidasa/metabolismo , Especificidad por Sustrato , Tiamina/metabolismo , Tiamina Pirofosfato/metabolismo
10.
Lett Appl Microbiol ; 67(3): 262-269, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-29856486

RESUMEN

Pyruvate oxidase is an important enzyme used as a reagent in kits and biochemical analyses; however, the yield of pyruvate oxidase from wild microbial strains is low. In this study, high-level expression of Aerococcus viridans pyruvate oxidase was achieved in recombinant Escherichia coli by optimizing the expression system and induction conditions. Three recombinant pET vectors were constructed for pyruvate oxidase expression in E. coli. The isopropyl-ß-d-thiogalactoside (IPTG) concentration and induction temperature were optimized, with the result that the highest pyruvate oxidase yield (4106·9 U l-1 ) of the recombinant E. colipET28a-pod was obtained under conditions of 25°C, 0·5 mmol l-1 IPTG, 0·5 OD600 , after 24 h of induction, which was 34·2 times the yield achieved with the wild-type strain. The soluble pyruvate oxidase contributed 99·6% of the total pyruvate oxidase expressed. SIGNIFICANCE AND IMPACT OF THE STUDY: This study demonstrates that a highly soluble pyruvate oxidase can be obtained in recombinant Escherichia coli by optimizing vectors and induction conditions. The pyruvate oxidase yield achieved is the highest reported so far, which provides a convenient and cost-saving way to produce pyruvate oxidase. This research promotes pyruvate oxidase application in the pharmaceutical and biochemical industries.


Asunto(s)
Aerococcus/enzimología , Proteínas Bacterianas/metabolismo , Escherichia coli/metabolismo , Vectores Genéticos/genética , Piruvato Oxidasa/metabolismo , Aerococcus/genética , Proteínas Bacterianas/genética , Escherichia coli/genética , Vectores Genéticos/metabolismo , Piruvato Oxidasa/genética , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Temperatura
11.
Acta Biochim Pol ; 65(1): 59-66, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29549669

RESUMEN

The Bacillus licheniformis ydaP gene encodes for a pyruvate oxidase that catalyses the oxidative decarboxylation of pyruvate to acetate and CO2. The YdaP form of this enzyme was purified about 48.6-folds to homogeneity in three steps. The enzyme was recovered in a soluble form and demonstrated significant activity on pyruvate using 2, 6-dichlorophenolindophenol (DCPIP) as an artificial electron acceptor. HPLC analysis of the YdaP-enzyme catalysed conversion of pyruvate showed acetate as the sole product, confirming the putative identity of pyruvate oxidase. Analysis of the substrate specificity showed that the YdaP enzyme demonstrated preference for short chain oxo acids; however, it was activated by 1% Triton X-100. The YdaP substrate-binding pocket from the YdaP protein differed substantially from the equivalent site in all of the so far characterized pyruvate oxidases, suggesting that the B. licheniformis YdaP might accept different substrates. This could allow more accessibility of large substrates into the active site of this enzyme. The thermostability and pH activity of the YdaP enzyme were determined, with optimums at 50ºC and pH 5.8, respectively. The amino acid residues forming the catalytic cavity were identified as Gln460 to Ala480.


Asunto(s)
Bacillus licheniformis/enzimología , Piruvato Oxidasa/genética , Bacillus licheniformis/genética , Proteínas Bacterianas , Catálisis , Dominio Catalítico , Clonación Molecular , Estabilidad de Enzimas , Expresión Génica , Genes Bacterianos , Especificidad por Sustrato
12.
Prep Biochem Biotechnol ; 48(2): 188-193, 2018 Feb 07.
Artículo en Inglés | MEDLINE | ID: mdl-29355461

RESUMEN

Pyruvate oxidase (PyOD) is a very powerful enzyme for clinical diagnostic applications and environmental monitoring. Influences of temperature on cell growth, plasmid stability, and PyOD expression during the PyOD fermentation process by recombinant Escherichia coli were investigated. Based on the influences of temperature on the physiological metabolism, a novel high-cell density fed-batch cultivation with gradient temperature decrease strategy for effective PyOD production was achieved, under which the biomass (OD600) of recombinant E. coli could reach to 71 and the highest PyOD activity in broth could reach to 3,307 U/L in 26 hr fermentation.


Asunto(s)
Aerococcus/enzimología , Técnicas de Cultivo Celular por Lotes/métodos , Escherichia coli/metabolismo , Piruvato Oxidasa/metabolismo , Aerococcus/genética , Aerococcus/metabolismo , Reactores Biológicos , Medios de Cultivo/metabolismo , Escherichia coli/genética , Fermentación , Plásmidos/genética , Plásmidos/metabolismo , Piruvato Oxidasa/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Temperatura
13.
J Bacteriol ; 200(8)2018 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-29378884

RESUMEN

Pyruvate oxidase (SpxB)-dependent H2O2 production is under the control of carbon catabolite protein A (CcpA) in the oral species Streptococcus sanguinis and Streptococcus gordonii Interestingly, both species react differently to the presence of the preferred carbohydrate source glucose. S. gordonii CcpA-dependent regulation of spxB follows classical carbon catabolite repression. Conversely, spxB expression in S. sanguinis is not influenced by glucose but is repressed by CcpA. Here, we constructed strains expressing the heterologous versions of CcpA or the spxB promoter region to learn if the distinct regulation of spxB expression is transferable from S. gordonii to S. sanguinis and vice versa. While cross-species binding of CcpA to the spxB promoter is conserved in vitro, we were unable to swap the species-specific regulation. This suggests that a regulatory mechanism upstream of CcpA most likely is responsible for the observed difference in spxB expression. Moreover, the overall ecological significance of differential spxB regulation in the presence of various glucose concentrations was tested with additional oral streptococcus isolates and demonstrated that carbohydrate-dependent and carbohydrate-independent mechanisms exist to control expression of spxB in the oral biofilm. Overall, our data demonstrate the unexpected finding that metabolic pathways between two closely related oral streptococcal species can be regulated differently despite an exceptionally high DNA sequence identity.IMPORTANCE Polymicrobial diseases are the result of interactions among the residential microbes, which can lead to a dysbiotic community. Streptococcus sanguinis and Streptococcus gordonii are considered commensal species that are present in the healthy dental biofilm. Both species are able to produce significant amounts of H2O2 via the enzymatic action of the pyruvate oxidase SpxB. H2O2 is able to inhibit species associated with oral diseases. SpxB and its gene-regulatory elements present in both species are highly conserved. Nonetheless, a differential response to the presence of glucose was observed. Here, we investigate the mechanisms that lead to this differential response. Detailed knowledge of the regulatory mechanisms will aid in a better understanding of oral disease development and how to prevent dysbiosis.


Asunto(s)
Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica , Piruvato Oxidasa/metabolismo , Streptococcus gordonii/metabolismo , Streptococcus sanguis/metabolismo , Proteínas Bacterianas/genética , Biopelículas/crecimiento & desarrollo , Glucosa/metabolismo , Peróxido de Hidrógeno/metabolismo , Redes y Vías Metabólicas , Regiones Promotoras Genéticas , Piruvato Oxidasa/genética , Streptococcus gordonii/genética , Streptococcus sanguis/genética
14.
Appl Environ Microbiol ; 83(21)2017 11 01.
Artículo en Inglés | MEDLINE | ID: mdl-28842545

RESUMEN

Lactobacillus brevis is an obligatory heterofermentative lactic acid bacterium that produces high levels of acetate, which improve the aerobic stability of silages against deterioration caused by yeasts and molds. However, the mechanism involved in acetate accumulation has yet to be elucidated. Here, experimental evidence indicated that aerobiosis resulted in the conversion of lactate to acetate after glucose exhaustion in L. brevis ATCC 367 (GenBank accession number NC_008497). To elucidate the conversion pathway, in silico analysis showed that lactate was first converted to pyruvate by the reverse catalytic reaction of lactate dehydrogenase (LDH); subsequently, pyruvate conversion to acetate might be mediated by pyruvate dehydrogenase (PDH) or pyruvate oxidase (POX). Transcriptional analysis indicated that the pdh and pox genes of L. brevis ATCC 367 were upregulated 37.92- and 18.32-fold, respectively, by oxygen and glucose exhaustion, corresponding to 5.32- and 2.35-fold increases in the respective enzyme activities. Compared with the wild-type strain, the transcription and enzymatic activity of PDH remained stable in the Δpox mutant, while those of POX increased significantly in the Δpdh mutant. More lactate but less acetate was produced in the Δpdh mutant than in the wild-type and Δpox mutant strains, and more H2O2 (a product of the POX pathway) was produced in the Δpdh mutant. We speculated that the high levels of aerobic acetate accumulation in L. brevis ATCC 367 originated mainly from the reuse of lactate to produce pyruvate, which was further converted to acetate by the predominant and secondary functions of PDH and POX, respectively.IMPORTANCE PDH and POX are two possible key enzymes involved in aerobic acetate accumulation in lactic acid bacteria (LAB). It is currently thought that POX plays the major role in aerobic growth in homofermentative LAB and some heterofermentative LAB, while the impact of PDH remains unclear. In this study, we reported that both PDH and POX worked in the aerobic conversion of lactate to acetate in L. brevis ATCC 367, in dominant and secondary roles, respectively. Our findings will further develop the theory of aerobic metabolism by LAB.


Asunto(s)
Acetatos/metabolismo , Ácido Láctico/metabolismo , Levilactobacillus brevis/metabolismo , Oxígeno/metabolismo , Aerobiosis , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Fermentación , Glucosa/metabolismo , L-Lactato Deshidrogenasa/genética , L-Lactato Deshidrogenasa/metabolismo , Levilactobacillus brevis/enzimología , Levilactobacillus brevis/genética , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Ácido Pirúvico/metabolismo
15.
Int J Food Microbiol ; 257: 276-284, 2017 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-28735145

RESUMEN

Long ripened cheeses, such as Grana Padano (GP), a Protected Designation of Origin (PDO) Italian cheese, harbor a viable microbiota mainly composed of non-starter lactic acid bacteria (NSLAB), which contribute to the final characteristics of cheese. The NSLAB species Lactobacillus rhamnosus, Lb. casei and Lb. paracasei are frequently found in GP, and form a closely related taxonomic group (Lb. casei group), making it difficult to distinguish the three species through 16S rRNA sequencing. SpxB, a metabolic gene coding for pyruvate oxidase in Lb. casei group, was recently used to distinguish the species within this bacterial group, both in pure cultures and in cheese, where it could provide an alternative energy source through the conversion of pyruvate to acetate. The aim of this work was to study the evolution of the metabolically active microbiota during different stages of GP ripening, targeting 16S rRNA to describe the whole microbiota composition, and spxB gene to monitor the biodiversity within the Lb. casei group. Furthermore, activation of pyruvate oxidase pathway was measured directly in cheese by reverse transcription real time PCR (RT-qPCR). The results showed that Lb. casei group dominates throughout the ripening and high-throughput sequencing of spxB allowed to identify four clusters inside the Lb. casei group. The dynamics of the sequence types forming the clusters were followed during ripening. Pyruvate oxidase pathway was expressed in cheese, showing a decreasing trend over ripening time. This work highlights how the composition of the microbiota in the early manufacturing stages influences the microbial dynamics throughout ripening, and how targeting of a metabolic gene can provide an insight into the activity of strains relevant for dairy products.


Asunto(s)
Queso/microbiología , Lacticaseibacillus casei/genética , Lacticaseibacillus paracasei/genética , Lacticaseibacillus rhamnosus/genética , Piruvato Oxidasa/genética , Secuencia de Bases , Biodiversidad , Secuenciación de Nucleótidos de Alto Rendimiento , Italia , Lacticaseibacillus casei/aislamiento & purificación , Lacticaseibacillus casei/metabolismo , Lacticaseibacillus paracasei/aislamiento & purificación , Lacticaseibacillus paracasei/metabolismo , Lacticaseibacillus rhamnosus/aislamiento & purificación , Lacticaseibacillus rhamnosus/metabolismo , ARN Ribosómico 16S/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Análisis de Secuencia de ADN
16.
PLoS One ; 12(2): e0172223, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28222125

RESUMEN

Streptococcus is the dominant bacterial genus in the human oral cavity and a leading cause of infective endocarditis. Streptococcus sanguinis belongs to the mitis group of streptococci and produces hydrogen peroxide (H2O2) by the action of SpxB, a pyruvate oxidase. In this study, we investigated the involvement of SpxB in survival of S. sanguinis in human blood and whether bacterial H2O2 exhibits cytotoxicity against human neutrophils. Results of a bactericidal test with human whole blood revealed that the spxB mutation in S. sanguinis is detrimental to its survival in blood. When S. sanguinis strains were exposed to isolated neutrophils, the bacterial survival rate was significantly decreased by spxB deletion. Furthermore, human neutrophils exposed to the S. sanguinis wild-type strain, in contrast to those exposed to an spxB mutant strain, underwent cell death with chromatin de-condensation and release of web-like extracellular DNA, reflecting induction of neutrophil extracellular traps (NETs). Since reactive oxygen species-mediated NET induction requires citrullination of arginine residues in histone proteins and subsequent chromatin de-condensation, we examined citrullination levels of histone in infected neutrophils. It is important to note that the citrullinated histone H3 was readily detected in neutrophils infected with the wild-type strain, as compared to infection with the spxB mutant strain. Moreover, decomposition of streptococcal H2O2 with catalase reduced NET induction. These results suggest that H2O2 produced by S. sanguinis provokes cell death of neutrophils and NET formation, thus potentially affecting bacterial survival in the bloodstream.


Asunto(s)
Proteínas Bacterianas/fisiología , Peróxido de Hidrógeno/metabolismo , Neutrófilos/microbiología , Piruvato Oxidasa/fisiología , Streptococcus sanguis/fisiología , Adulto , Proteínas Bacterianas/genética , Actividad Bactericida de la Sangre , Muerte Celular , Cromatina/ultraestructura , Citrulina/análisis , Trampas Extracelulares , Eliminación de Gen , Histonas/sangre , Humanos , Neutrófilos/fisiología , Procesamiento Proteico-Postraduccional , Piruvato Oxidasa/deficiencia , Piruvato Oxidasa/genética , Especies Reactivas de Oxígeno , Streptococcus sanguis/genética , Streptococcus sanguis/patogenicidad , Virulencia
17.
Biochem Biophys Res Commun ; 485(2): 461-467, 2017 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-28202416

RESUMEN

Oral streptococci including mitis group streptococci are commensal residents and are also the first to colonize the oral cavity. However, various species of these oral streptococci have the potential to invade the host and occasionally lead to severe infectious disease such as cardiovascular diseases. Oral streptococci have close interactions with the host immune system including macrophages at the oral mucosal surface. One notable common trait of oral streptococcus including Streptococcus oralis (S. oralis) is the production of hydrogen peroxide (H2O2). Using a comprehensive microarray approach, we sought to understand the innate immune response profiling affected by H2O2 production from oral streptococci. We compared the gene expression patterns of macrophages infected with S. oralis wild type (WT) and streptococcal pyruvate oxidase knockout (SpxB-KO), a strain that does not produce H2O2. We found that H2O2 from S. oralis suppressed proinflammatory gene expression such as TNF-α, that is induced in response to infection, and activated the cellular stress genes such as Egr-1 in response to oxidative stress. A comparative gene ontology analysis of S. oralis WT and SpxB-KO strains revealed that during infection, down regulated genes were closely related to the processes involved in the host defense reaction and up regulated genes were related with the cellular stress responses. Using qPCR analysis, we also confirmed the same pattern of expression changes such as TNF-α, IL-6 and Egr-1. Furthermore, supernatant from SpxB-KO could not suppress the expression of TNF-α in macrophages stimulated with LPS. These findings suggested that H2O2 production from S. oralis leads to the suppression of inflammatory responses and NF-κB signaling pathways in macrophages as well as the induction of the oxidative stress response. We concluded that streptococcal H2O2 production has the beneficial effects of modulating the innate immune response, thereby stabilizing streptococcal colonization at the mucosal surface and even in the bloodstream leading to cardiovascular disease after invasion, in addition to the commensal role to compete other bacterial species as initial colonizer at oral cavity.


Asunto(s)
Perfilación de la Expresión Génica/métodos , Peróxido de Hidrógeno/metabolismo , Macrófagos/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Streptococcus oralis/metabolismo , Células 3T3 , Animales , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Western Blotting , Línea Celular , Análisis por Conglomerados , Proteína 1 de la Respuesta de Crecimiento Precoz/genética , Proteína 1 de la Respuesta de Crecimiento Precoz/metabolismo , Ontología de Genes , Interacciones Huésped-Patógeno , Interleucina-6/genética , Interleucina-6/metabolismo , Lipopolisacáridos/farmacología , Macrófagos/efectos de los fármacos , Macrófagos/microbiología , Ratones , Ratones Endogámicos BALB C , Mutación , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Streptococcus oralis/genética , Streptococcus oralis/fisiología , Factor de Necrosis Tumoral alfa/genética , Factor de Necrosis Tumoral alfa/metabolismo
18.
BMC Microbiol ; 16(1): 271, 2016 11 09.
Artículo en Inglés | MEDLINE | ID: mdl-27829373

RESUMEN

BACKGROUND: Streptococcus pneumoniae is one of the leading causes of community acquired pneumonia and acute otitis media. Certain aspects of S. pneumoniae's virulence are dependent upon expression and release of the protein toxin pneumolysin (PLY) and upon the activity of the peroxide-producing enzyme, pyruvate oxidase (SpxB). We investigated the possible synergy of these two proteins and identified that release of PLY is enhanced by expression of SpxB prior to stationary phase growth. RESULTS: Mutants lacking the spxB gene were defective in PLY release and complementation of spxB restored PLY release. This was demonstrated by cytotoxic effects of sterile filtered supernatants upon epithelial cells and red blood cells. Additionally, peroxide production appeared to contribute to the mechanism of PLY release since a significant correlation was found between peroxide production and PLY release among a panel of clinical isolates. Exogenous addition of H2O2 failed to induce PLY release and catalase supplementation prevented PLY release in some strains, indicating peroxide may exert its effect intracellularly or in a strain-dependent manner. SpxB expression did not trigger bacterial cell death or LytA-dependent autolysis, but did predispose cells to deoxycholate lysis. CONCLUSIONS: Here we demonstrate a novel link between spxB expression and PLY release. These findings link liberation of PLY toxin to oxygen availability and pneumococcal metabolism.


Asunto(s)
Piruvato Oxidasa/metabolismo , Streptococcus pneumoniae/metabolismo , Estreptolisinas/metabolismo , Autólisis , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Catalasa , ADN Bacteriano/genética , Células Epiteliales/microbiología , Eritrocitos/microbiología , Genes Bacterianos , Peróxido de Hidrógeno/metabolismo , Oxígeno , Piruvato Oxidasa/genética , Eliminación de Secuencia , Streptococcus pneumoniae/enzimología , Streptococcus pneumoniae/genética , Estreptolisinas/genética , Virulencia
19.
Food Microbiol ; 59: 57-65, 2016 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-27375244

RESUMEN

This study focused on the spxB gene, which encodes for pyruvate oxidase. The presence of spxB in the genome and its transcription could be a way to produce energy and allow bacterial growth during carbohydrate starvation. In addition, the activity of pyruvate oxidase, which produces hydrogen peroxide, could be a mechanism for interspecies competition. Because this gene seems to provide advantages for the encoding species for adaptation in complex ecosystems, we studied spxB in a large set of cheese isolates belonging to the Lactobacillus casei group. Through this study, we demonstrated that this gene is widely found in the genomes of members of the L. casei group and shows variability useful for taxonomic studies. In particular, the HRM analysis method allowed for a specific discrimination between Lactobacillus rhamnosus, Lactobacillus paracasei and L. casei. Regarding the coding region, the spxB functionality in cheese was shown for the first time by real-time PCR, and by exploiting the heterogeneity between the L. casei group species, we identified the bacterial communities encoding the spxB gene in this ecosystem. This study allowed for monitoring of the active bacterial community involved in different stages of ripening by following the POX pathway.


Asunto(s)
Proteínas Bacterianas/genética , Queso/microbiología , Microbiología de Alimentos , Genoma Bacteriano , Lacticaseibacillus casei/genética , Piruvato Oxidasa/genética , Proteínas Bacterianas/metabolismo , ADN Bacteriano/genética , ADN Complementario , Lacticaseibacillus casei/crecimiento & desarrollo , Lacticaseibacillus casei/metabolismo , Lacticaseibacillus paracasei/genética , Lacticaseibacillus rhamnosus/genética , Consorcios Microbianos/genética , Consorcios Microbianos/fisiología , Piruvato Oxidasa/metabolismo , ARN Ribosómico 16S/genética , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Alineación de Secuencia , Temperatura
20.
Antimicrob Agents Chemother ; 60(1): 409-17, 2016 01.
Artículo en Inglés | MEDLINE | ID: mdl-26525786

RESUMEN

We studied the transcriptomic response of Streptococcus pneumoniae to the fluoroquinolone moxifloxacin at a concentration that inhibits DNA gyrase. Treatment of the wild-type strain R6, at a concentration of 10× the MIC, triggered a response involving 132 genes after 30 min of treatment. Genes from several metabolic pathways involved in the production of pyruvate were upregulated. These included 3 glycolytic enzymes, which ultimately convert fructose 6-phosphate to pyruvate, and 2 enzymes that funnel phosphate sugars into the glycolytic pathway. In addition, acetyl coenzyme A (acetyl-CoA) carboxylase was downregulated, likely leading to an increase in acetyl-CoA. When coupled with an upregulation in formate acetyltransferase, an increase in acetyl-CoA would raise the production of pyruvate. Since pyruvate is converted by pyruvate oxidase (SpxB) into hydrogen peroxide (H2O2), an increase in pyruvate would augment intracellular H2O2. Here, we confirm a 21-fold increase in the production of H2O2 and a 55-fold increase in the amount of hydroxyl radical in cultures treated during 4 h with moxifloxacin. This increase in hydroxyl radical through the Fenton reaction would damage DNA, lipids, and proteins. These reactive oxygen species contributed to the lethality of the drug, a conclusion supported by the observed protective effects of an SpxB deletion. These results support the model whereby fluoroquinolones cause redox alterations. The transcriptional response of S. pneumoniae to moxifloxacin is compared with the response to levofloxacin, an inhibitor of topoisomerase IV. Levofloxacin triggers the transcriptional activation of iron transport genes and also enhances the Fenton reaction.


Asunto(s)
Antibacterianos/farmacología , Proteínas Bacterianas/genética , Fluoroquinolonas/farmacología , Regulación Bacteriana de la Expresión Génica , Peróxido de Hidrógeno/metabolismo , Streptococcus pneumoniae/efectos de los fármacos , Acetil-CoA Carboxilasa/genética , Acetil-CoA Carboxilasa/metabolismo , Acetiltransferasas/genética , Acetiltransferasas/metabolismo , Proteínas Bacterianas/metabolismo , Topoisomerasa de ADN IV/genética , Topoisomerasa de ADN IV/metabolismo , Farmacorresistencia Bacteriana Múltiple , Fructosafosfatos/metabolismo , Eliminación de Gen , Perfilación de la Expresión Génica , Ontología de Genes , Glucólisis/efectos de los fármacos , Glucólisis/genética , Hierro/metabolismo , Levofloxacino/farmacología , Pruebas de Sensibilidad Microbiana , Anotación de Secuencia Molecular , Moxifloxacino , Estrés Oxidativo/efectos de los fármacos , Piruvato Oxidasa/genética , Piruvato Oxidasa/metabolismo , Ácido Pirúvico/metabolismo , Streptococcus pneumoniae/genética , Streptococcus pneumoniae/metabolismo , Transcripción Genética
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