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1.
J Chem Inf Model ; 63(3): 986-1001, 2023 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-36779232

RESUMEN

The catalytic function of lysyl hydroxylase-2 (LH2), a member of the Fe(II)/αKG-dependent oxygenase superfamily, is to catalyze the hydroxylation of lysine to hydroxylysine in collagen, resulting in stable hydroxylysine aldehyde-derived collagen cross-links (HLCCs). Reports show that high amounts of LH2 lead to the accumulation of HLCCs, causing fibrosis and specific types of cancer metastasis. Some members of the Fe(II)/αKG-dependent family have also been reported to have intramolecular O2 tunnels, which aid in transporting one of the required cosubstrates into the active site. While LH2 can be a promising target to combat these diseases, efficacious inhibitors are still lacking. We have used computational simulations to investigate a series of 44 small molecules as lead compounds for LH2 inhibition. Tunneling analyses indicate the existence of several intramolecular tunnels. The lengths of the calculated O2-transporting tunnels in holoenzymes are relatively longer than those in the apoenzyme, suggesting that the ligands may affect the enzyme's structure and possibly block (at least partially) the tunnels. The sequence alignment analysis between LH enzymes from different organisms shows that all of the amino acid residues with the highest occurrence rate in the oxygen tunnels are conserved. Our results suggest that the enolate form of diketone compounds establishes stronger interactions with the Fe(II) in the active site. Branching the enolate compounds with functional groups such as phenyl and pyridinyl enhances the interaction with various residues around the active site. Our results provide information about possible leads for further LH2 inhibition design and development.


Asunto(s)
Hidroxilisina , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa , Colágeno/química , Colágeno/metabolismo , Compuestos Ferrosos , Lisina/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/antagonistas & inhibidores , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química
2.
Transl Res ; 239: 1-17, 2022 01.
Artículo en Inglés | MEDLINE | ID: mdl-34400365

RESUMEN

Heritable thoracic aortic disease and familial thoracic aortic aneurysm/dissection are important causes of human morbidity/mortality, most without identifiable genetic cause. In a family with familial thoracic aortic aneurysm/dissection, we identified a missense p. (Ser178Arg) variant in PLOD1 segregating with disease, and evaluated PLOD1 enzymatic activity, collagen characteristics and in human aortic vascular smooth muscle cells, studied the effect on function. Comparison with homologous PLOD3 enzyme indicated that the pathogenic variant may affect the N-terminal glycosyltransferase domain, suggesting unprecedented PLOD1 activity. In vitro assays demonstrated that wild-type PLOD1 is capable of processing UDP-glycan donor substrates, and that the variant affects the folding stability of the glycosyltransferase domain and associated enzymatic functions. The PLOD1 substrate lysine was elevated in the proband, however the enzymatic product hydroxylysine and total collagen content was not different, albeit despite collagen fibril narrowing and preservation of collagen turnover. In VSMCs overexpressing wild-type PLOD1, there was upregulation in procollagen gene expression (secretory function) which was attenuated in the variant, consistent with loss-of-function. In comparison, si-PLOD1 cells demonstrated hypercontractility and upregulation of contractile markers, providing evidence for phenotypic switching. Together, the findings suggest that the PLOD1 product is preserved, however newly identified glucosyltransferase activity of PLOD1 appears to be affected by folding stability of the variant, and is associated with compensatory vascular smooth muscle cells phenotypic switching to support collagen production, albeit with less robust fibril girth. Future studies should focus on the impact of PLOD1 folding/variant stability on the tertiary structure of collagen and ECM interactions.


Asunto(s)
Aneurisma de la Aorta Torácica/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Adulto , Sustitución de Aminoácidos , Aorta/fisiopatología , Aneurisma de la Aorta Torácica/fisiopatología , Aneurisma de la Aorta Torácica/cirugía , Células Cultivadas , Colágeno/genética , Colágeno/metabolismo , Cadena alfa 1 del Colágeno Tipo I/genética , Cadena alfa 1 del Colágeno Tipo I/metabolismo , Colágeno Tipo III/genética , Colágeno Tipo III/metabolismo , Femenino , Humanos , Masculino , Músculo Liso Vascular/fisiopatología , Mutación Missense , Linaje , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química
3.
Bone ; 154: 116242, 2022 01.
Artículo en Inglés | MEDLINE | ID: mdl-34718219

RESUMEN

Lysyl hydroxylase 2 (LH2) is an enzyme that catalyzes the hydroxylation of lysine (Lys) residues in fibrillar collagen telopeptides, a critical post-translational modification for the stability of intermolecular cross-links. Though abnormal LH2 activities have been implicated in various diseases including Bruck syndrome, the molecular basis of the pathologies is still not well understood. Since LH2 null mice die at early embryonic stage, we generated LH2 heterozygous (LH2+/-) mice in which LH2 level is significantly diminished, and characterized collagen and bone phenotypes using femurs. Compared to the wild-type (WT), LH2+/- collagen showed a significant decrease in the ratio of hydroxylysine (Hyl)- to the Lys-aldehyde-derived collagen cross-links without affecting the total number of aldehydes involved in cross-links. Mass spectrometric analysis revealed that, in LH2+/- type I collagen, the extent of hydroxylation of all telopeptidyl Lys residues was significantly decreased. In the helical domain, Lys hydroxylation at the cross-linking sites was either unaffected or slightly lower, but other sites were significantly diminished compared to WT. In LH2+/- femurs, mineral densities of cortical and cancellous bones were significantly decreased and the mechanical properties of cortical bones evaluated by nanoindentation analysis were compromised. When cultured, LH2+/- osteoblasts poorly produced mineralized nodules compared to WT osteoblasts. These data provide insight into the functionality of LH2 in collagen molecular phenotype and its critical role in bone matrix mineralization and mechanical properties.


Asunto(s)
Osteogénesis Imperfecta , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Animales , Colágeno/química , Colágeno Tipo I/genética , Ratones , Fenotipo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/farmacocinética
4.
Angew Chem Int Ed Engl ; 59(19): 7367-7371, 2020 05 04.
Artículo en Inglés | MEDLINE | ID: mdl-32074393

RESUMEN

N-alkylisonitrile, a precursor to isonitrile-containing lipopeptides, is biosynthesized by decarboxylation-assisted -N≡C group (isonitrile) formation by using N-alkylglycine as the substrate. This reaction is catalyzed by iron(II) and 2-oxoglutarate (Fe/2OG) dependent enzymes. Distinct from typical oxygenation or halogenation reactions catalyzed by this class of enzymes, installation of the isonitrile group represents a novel reaction type for Fe/2OG enzymes that involves a four-electron oxidative process. Reported here is a plausible mechanism of three Fe/2OG enzymes, Sav607, ScoE and SfaA, which catalyze isonitrile formation. The X-ray structures of iron-loaded ScoE in complex with its substrate and the intermediate, along with biochemical and biophysical data reveal that -N≡C bond formation involves two cycles of Fe/2OG enzyme catalysis. The reaction starts with an FeIV -oxo-catalyzed hydroxylation. It is likely followed by decarboxylation-assisted desaturation to complete isonitrile installation.


Asunto(s)
Glicina/síntesis química , Hierro/química , Nitrilos/síntesis química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Catálisis , Glicina/análogos & derivados , Hidroxilación , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Oxidación-Reducción , Difracción de Rayos X
5.
PLoS Genet ; 15(6): e1008196, 2019 06.
Artículo en Inglés | MEDLINE | ID: mdl-31173582

RESUMEN

Covalent intermolecular cross-linking of collagen is essential for tissue stability. Recent studies have demonstrated that cyclophilin B (CypB), an endoplasmic reticulum (ER)-resident peptidyl-prolyl cis-trans isomerase, modulates lysine (Lys) hydroxylation of type I collagen impacting cross-linking chemistry. However, the extent of modulation, the molecular mechanism and the functional outcome in tissues are not well understood. Here, we report that, in CypB null (KO) mouse skin, two unusual collagen cross-links lacking Lys hydroxylation are formed while neither was detected in wild type (WT) or heterozygous (Het) mice. Mass spectrometric analysis of type I collagen showed that none of the telopeptidyl Lys was hydroxylated in KO or WT/Het mice. Hydroxylation of the helical cross-linking Lys residues was almost complete in WT/Het but was markedly diminished in KO. Lys hydroxylation at other sites was also lower in KO but to a lesser extent. A key glycosylation site, α1(I) Lys-87, was underglycosylated while other sites were mostly overglycosylated in KO. Despite these findings, lysyl hydroxylases and glycosyltransferase 25 domain 1 levels were significantly higher in KO than WT/Het. However, the components of ER chaperone complex that positively or negatively regulates lysyl hydroxylase activities were severely reduced or slightly increased, respectively, in KO. The atomic force microscopy-based nanoindentation modulus were significantly lower in KO skin than WT. These data demonstrate that CypB deficiency profoundly affects Lys post-translational modifications of collagen likely by modulating LH chaperone complexes. Together, our study underscores the critical role of CypB in Lys modifications of collagen, cross-linking and mechanical properties of skin.


Asunto(s)
Ciclofilinas/química , Lisina/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Piel/enzimología , Animales , Colágeno Tipo I/biosíntesis , Colágeno Tipo I/genética , Ciclofilinas/genética , Ciclofilinas/ultraestructura , Retículo Endoplásmico/química , Retículo Endoplásmico/enzimología , Glicosilación , Heterocigoto , Hidroxilación , Lisina/genética , Espectrometría de Masas , Ratones , Ratones Noqueados , Microscopía de Fuerza Atómica , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Procesamiento Proteico-Postraduccional/genética , Piel/química
6.
J Med Genet ; 56(9): 629-638, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31129566

RESUMEN

BACKGROUND: Pathogenic PLOD3 variants cause a connective tissue disorder (CTD) that has been described rarely. We further characterise this CTD and propose a clinical diagnostic label to improve recognition and diagnosis of PLOD3-related disease. METHODS: Reported PLOD3 phenotypes were compared with known CTDs utilising data from three further individuals from a consanguineous family with a homozygous PLOD3 c.809C>T; p.(Pro270Leu) variant. PLOD3 mRNA expression in the developing embryo was analysed for tissue-specific localisation. Mouse microarray expression data were assessed for phylogenetic gene expression similarities across CTDs with overlapping clinical features. RESULTS: Key clinical features included ocular abnormalities with risk for retinal detachment, sensorineural hearing loss, reduced palmar creases, finger contractures, prominent knees, scoliosis, low bone mineral density, recognisable craniofacial dysmorphisms, developmental delay and risk for vascular dissection. Collated clinical features showed most overlap with Stickler syndrome with variable features of Ehlers-Danlos syndrome (EDS) and epidermolysis bullosa (EB). Human lysyl hydroxylase 3/PLOD3 expression was localised to the developing cochlea, eyes, skin, forelimbs, heart and cartilage, mirroring the clinical phenotype of this disorder. CONCLUSION: These data are consistent with pathogenic variants in PLOD3 resulting in a clinically distinct Stickler-like syndrome with vascular complications and variable features of EDS and EB. Early identification of PLOD3 variants would improve monitoring for comorbidities and may avoid serious adverse ocular and vascular outcomes.


Asunto(s)
Artritis/diagnóstico , Artritis/genética , Enfermedades del Tejido Conjuntivo/diagnóstico , Enfermedades del Tejido Conjuntivo/genética , Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Variación Genética , Pérdida Auditiva Sensorineural/diagnóstico , Pérdida Auditiva Sensorineural/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Desprendimiento de Retina/diagnóstico , Desprendimiento de Retina/genética , Enfermedades Vasculares/diagnóstico , Adolescente , Adulto , Animales , Artritis/complicaciones , Hibridación Genómica Comparativa , Enfermedades del Tejido Conjuntivo/complicaciones , Modelos Animales de Enfermedad , Facies , Femenino , Expresión Génica , Estudios de Asociación Genética/métodos , Pérdida Auditiva Sensorineural/complicaciones , Humanos , Inmunohistoquímica , Masculino , Ratones , Modelos Moleculares , Mutación , Linaje , Fenotipo , Filogenia , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Conformación Proteica , Desprendimiento de Retina/complicaciones , Relación Estructura-Actividad , Enfermedades Vasculares/etiología , Secuenciación del Exoma , Adulto Joven
7.
J Bone Miner Res ; 34(7): 1376-1382, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-30721533

RESUMEN

PLOD genes encode for procollagen lysyl hydroxylase enzymes (LH/PLOD), a family of proteins essential for collagen biosynthesis. Several mutations affect these genes, causing severe disorders, such as Ehlers-Danlos and Bruck syndrome, as well a connective tissue disease with phenotype resembling osteogenesis imperfecta caused by lack of LH3 functions. The recently determined three-dimensional (3D) structures of the full-length human LH3/PLOD3 isoform, together with the structure of a fragment of a viral LH/PLOD homolog, are now allowing molecular mapping of the numerous disease-causing mutations, providing insights often suitable for the interpretation of the resulting disease phenotypes. However, the added value of molecular structure interpretation is affected by the limited accessibility of complex molecular data to scientific communities lacking direct expertise in structural biology. In this work, we present a Structurally-integrated database for Mutations of PLOD genes (SiMPLOD), a publicly-available manually-curated online database with an embedded molecular viewer interface for the visualization and interpretation of LH/PLOD mutations on available molecular models. Each SiMPLOD entry is accompanied by manual annotations extrapolated from literature references and comments about the localization of the amino acid variants on the molecular structure. Additional links to the appropriate online resources for clinically-relevant as well as biochemical data are also provided in a standardized format. The web application is available at http://fornerislab.unipv.it/SiMPLOD. © 2019 American Society for Bone and Mineral Research.


Asunto(s)
Bases de Datos de Proteínas , Mutación/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Secuencia de Aminoácidos , Humanos , Modelos Moleculares , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Interfaz Usuario-Computador
8.
Org Biomol Chem ; 17(7): 1736-1739, 2019 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-30320324

RESUMEN

We present the functional characterization of GlbB, a lysine 4-hydroxylase from the glidobactin biosynthetic gene cluster. Despite its narrow substrate specificity, GlbB is able to catalyze the hydroxylation of l-lysine with excellent total turnover number and complete regio- and diastereoselectivity. The synthetic utility of GlbB is illustrated by its use in the efficient preparation of a key dipeptide fragment of glidobactin.


Asunto(s)
Biocatálisis , Péptidos/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Modelos Moleculares , Péptidos/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Conformación Proteica , Estereoisomerismo
9.
Nat Commun ; 9(1): 3163, 2018 08 08.
Artículo en Inglés | MEDLINE | ID: mdl-30089812

RESUMEN

Lysyl hydroxylases catalyze hydroxylation of collagen lysines, and sustain essential roles in extracellular matrix (ECM) maturation and remodeling. Malfunctions in these enzymes cause severe connective tissue disorders. Human lysyl hydroxylase 3 (LH3/PLOD3) bears multiple enzymatic activities, as it catalyzes collagen lysine hydroxylation and also their subsequent glycosylation. Our understanding of LH3 functions is currently hampered by lack of molecular structure information. Here, we present high resolution crystal structures of full-length human LH3 in complex with cofactors and donor substrates. The elongated homodimeric LH3 architecture shows two distinct catalytic sites at the N- and C-terminal boundaries of each monomer, separated by an accessory domain. The glycosyltransferase domain displays distinguishing features compared to other known glycosyltransferases. Known disease-related mutations map in close proximity to the catalytic sites. Collectively, our results provide a structural framework characterizing the multiple functions of LH3, and the molecular mechanisms of collagen-related diseases involving human lysyl hydroxylases.


Asunto(s)
Glicosiltransferasas/química , Glicosiltransferasas/fisiología , Estructura Molecular , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/fisiología , Secuencia de Aminoácidos , Catálisis , Dominio Catalítico/genética , Dominio Catalítico/fisiología , Colágeno/metabolismo , Cristalografía por Rayos X , Dimerización , Activación Enzimática , Pruebas de Enzimas , Glicosiltransferasas/genética , Células HEK293 , Células HeLa , Humanos , Hidroxilación , Lisina/metabolismo , Modelos Moleculares , Proteínas Mutantes/genética , Mutación , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Mapeo de Interacción de Proteínas , Estructura Terciaria de Proteína , Proteínas Recombinantes
10.
Nat Commun ; 9(1): 512, 2018 02 06.
Artículo en Inglés | MEDLINE | ID: mdl-29410444

RESUMEN

Collagen lysyl hydroxylases (LH1-3) are Fe2+- and 2-oxoglutarate (2-OG)-dependent oxygenases that maintain extracellular matrix homeostasis. High LH2 levels cause stable collagen cross-link accumulations that promote fibrosis and cancer progression. However, developing LH antagonists will require structural insights. Here, we report a 2 Å crystal structure and X-ray scattering on dimer assemblies for the LH domain of L230 in Acanthamoeba polyphaga mimivirus. Loop residues in the double-stranded ß-helix core generate a tail-to-tail dimer. A stabilizing hydrophobic leucine locks into an aromatic tyrosine-pocket on the opposite subunit. An active site triad coordinates Fe2+. The two active sites flank a deep surface cleft that suggest dimerization creates a collagen-binding site. Loss of Fe2+-binding disrupts the dimer. Dimer disruption and charge reversal in the cleft increase Km and reduce LH activity. Ectopic L230 expression in tumors promotes collagen cross-linking and metastasis. These insights suggest inhibitor targets for fibrosis and cancer.


Asunto(s)
Hierro/química , Mimiviridae/enzimología , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Multimerización de Proteína , Proteínas Virales/química , Secuencia de Aminoácidos , Animales , Dominio Catalítico , Línea Celular Tumoral , Colágeno/química , Colágeno/metabolismo , Cristalografía por Rayos X , Estabilidad de Enzimas , Humanos , Hierro/metabolismo , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/metabolismo , Neoplasias Pulmonares/patología , Ratones Desnudos , Mimiviridae/genética , Mutación , Metástasis de la Neoplasia , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Unión Proteica , Dispersión del Ángulo Pequeño , Homología de Secuencia de Aminoácido , Trasplante Heterólogo , Proteínas Virales/genética , Proteínas Virales/metabolismo , Difracción de Rayos X
11.
Biomed Res Int ; 2017: 5316845, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29082249

RESUMEN

The role of the extracellular matrix (ECM) in uterine fibroids (UF) has recently been appreciated. Overhydroxylation of lysine residues and the subsequent formation of hydroxylysylpyridinoline (HP) and lysylpyridinoline (LP) cross-links underlie the ECM stiffness and profoundly affect tumor progression. The aim of the current study was to investigate the relationship between ECM of UF, collagen and collagen cross-linking enzymes [lysyl hydroxylases (LH) and lysyl oxidases (LOX)], and the development and progression of UF. Our results indicated that hydroxyl lysine (Hyl) and HP cross-links are significantly higher in UF compared to the normal myometrial tissues accompanied by increased expression of LH (LH2b) and LOX. Also, increased resistance to matrix metalloproteinases (MMP) proteolytic degradation activity was observed. Furthermore, the extent of collagen cross-links was positively correlated with the expression of myofibroblast marker (α-SMA), growth-promoting markers (PCNA; pERK1/2; FAKpY397; Ki-67; and Cyclin D1), and the size of UF. In conclusion, our study defines the role of overhydroxylation of collagen and collagen cross-linking enzymes in modulating UF cell proliferation, differentiation, and resistance to MMP. These effects can establish microenvironment conducive for UF progression and thus represent potential target treatment options of UF.


Asunto(s)
Matriz Extracelular/metabolismo , Leiomioma/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Proteína-Lisina 6-Oxidasa/metabolismo , Neoplasias Uterinas/metabolismo , Adulto , Aminoácidos/biosíntesis , Colágeno/metabolismo , Matriz Extracelular/química , Femenino , Regulación Neoplásica de la Expresión Génica/genética , Humanos , Hidroxilación , Leiomioma/enzimología , Leiomioma/genética , Leiomioma/patología , Lisina/metabolismo , Metaloproteinasas de la Matriz/química , Metaloproteinasas de la Matriz/metabolismo , Proteínas de Neoplasias/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Proteína-Lisina 6-Oxidasa/química , Neoplasias Uterinas/enzimología , Neoplasias Uterinas/genética , Neoplasias Uterinas/patología
12.
Sci Rep ; 7: 46021, 2017 04 05.
Artículo en Inglés | MEDLINE | ID: mdl-28378777

RESUMEN

Bruck Syndrome is a connective tissue disease associated with inactivating mutations in lysyl hydroxylase 2 (LH2/PLOD2) or FK506 binding protein 65 (FKBP65/FKBP10). However, the functional relationship between LH2 and FKBP65 remains unclear. Here, we postulated that peptidyl prolyl isomerase (PPIase) activity of FKBP65 positively modulates LH2 enzymatic activity and is critical for the formation of hydroxylysine-aldehyde derived intermolecular collagen cross-links (HLCCs). To test this hypothesis, we analyzed collagen cross-links in Fkbp10-null and -wild-type murine embryonic fibroblasts. Although LH2 protein levels did not change, FKBP65 deficiency significantly diminished HLCCs and increased the non-hydroxylated lysine-aldehyde-derived collagen cross-links (LCCs), a pattern consistent with loss of LH2 enzymatic activity. The HLCC-to-LCC ratio was rescued in FKBP65-deficient murine embryonic fibroblasts by reconstitution with wild-type but not mutant FKBP65 that lacks intact PPIase domains. Findings from co-immunoprecipitation, protein-fragment complementation, and co-immunofluorescence assays showed that LH2 and FKBP65 are part of a common protein complex. We conclude that FKBP65 regulates LH2-mediated collagen cross-linking. Because LH2 promotes fibrosis and cancer metastasis, our findings suggest that pharmacologic strategies to target FKBP65 and LH2 may have complementary therapeutic activities.


Asunto(s)
Colágeno/metabolismo , Reactivos de Enlaces Cruzados/metabolismo , Isomerasa de Peptidilprolil/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Proteínas de Unión a Tacrolimus/metabolismo , Animales , Embrión de Mamíferos/citología , Fibroblastos/metabolismo , Ratones , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Unión Proteica , Dominios Proteicos
13.
Biochem J ; 453(3): 357-70, 2013 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-23688307

RESUMEN

Jmjd6 (jumonji-domain-containing protein 6) is an Fe(II)- and 2OG (2-oxoglutarate)-dependent oxygenase that catalyses hydroxylation of lysine residues in proteins involved in pre-mRNA splicing. Jmjd6 plays an essential role in vertebrate embryonic development and has been shown to modulate alternative splicing in response to hypoxic stress. In the present study we show that an alternatively spliced version of Jmjd6 lacking the polyS (polyserine) domain localizes to the nucleolus, predominantly in the fibrillar centre. Jmjd6 with the polyS domain deleted also interacts with nucleolar proteins. Furthermore, co-immunoprecipitation experiments and F2H (fluorescent 2-hybrid) assays demonstrate that Jmjd6 homo-oligomerization occurs in cells. In correlation with the observed variations in the subnuclear distribution of Jmjd6, the structure of Jmjd6 oligomers in vitro changes in the absence of the polyS domain, possibly reflecting the role of the polyS domain in nuclear/nucleolar shuttling of Jmjd6.


Asunto(s)
Histona Demetilasas con Dominio de Jumonji/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Línea Celular , Nucléolo Celular/metabolismo , Nucléolo Celular/ultraestructura , Cromatografía en Gel , Electroforesis en Gel Bidimensional , Recuperación de Fluorescencia tras Fotoblanqueo , Células HeLa , Humanos , Inmunoprecipitación , Histona Demetilasas con Dominio de Jumonji/química , Microscopía Electrónica de Transmisión , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Empalme del ARN/genética
14.
J Cell Biochem ; 113(5): 1663-70, 2012 May.
Artículo en Inglés | MEDLINE | ID: mdl-22189873

RESUMEN

Jumonji C-terminal (JmjC) domain-containing proteins are protein hydroxylases and histone demethylases that control gene expression. Jumonji domain-containing protein 6 (Jmjd6) is indispensable for embryonic development and has both histone arginine demethylase and lysyl-hydroxylase activities. The protein undergoes post-translational homo-oligomerization, but the underlying mechanism remains unknown. In this study, we examined the enzymatic activity of Jmjd6 and uncovered the mechanism underlying its homo-oligomerization. An in vitro enzymatic assay monitored by matrix-assisted laser desorption-ionization time-of-flight (MALDI-TOF) mass spectrometry indicates that Jmjd6 is unable to remove the methyl group from histone arginine residues but can hydroxylate the histone H4 tail at lysine residues in a 2-oxoglutarate (2-OG)- and Fe (II)-dependent manner. A mutational analysis reveals that the homo-oligomerization of Jmjd6 requires its enzymatic activity and the N- and C-termini. Using an in vitro enzymatic assay, we further demonstrate that Jmjd6 can hydroxylate its N-terminus but not its C-terminus. In summary, we did not detect arginine demethylase activity for Jmjd6, but we did confirm that it could catalyze the lysyl-hydroxylation of histone peptides. In addition, we demonstrated that the homo-oligomerization of Jmjd6 requires its own enzymatic activity and the N- and C-termini. We propose that Jmjd6 forms intermolecular covalent bonds between its N- and C-termini via autohydroxylation.


Asunto(s)
Histona Demetilasas con Dominio de Jumonji/química , Histona Demetilasas con Dominio de Jumonji/metabolismo , Secuencia de Aminoácidos , Células HEK293 , Histonas/química , Histonas/genética , Histonas/metabolismo , Humanos , Hidroxilación , Técnicas In Vitro , Histona Demetilasas con Dominio de Jumonji/genética , Datos de Secuencia Molecular , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Multimerización de Proteína , Estructura Terciaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Especificidad por Sustrato
15.
J Biol Chem ; 286(51): 43701-43709, 2011 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-22045808

RESUMEN

Collagens, the most abundant proteins in animals, are modified by hydroxylation of proline and lysine residues and by glycosylation of hydroxylysine. Dedicated prolyl hydroxylase, lysyl hydroxylase, and collagen glycosyltransferase enzymes localized in the endoplasmic reticulum mediate these modifications prior to the formation of the collagen triple helix. Whereas collagen-like proteins have been described in some fungi, bacteria, and viruses, the post-translational machinery modifying collagens has never been described outside of animals. We demonstrate that the L230 open reading frame of the giant virus Acanthamoeba polyphaga mimivirus encodes an enzyme that has distinct lysyl hydroxylase and collagen glycosyltransferase domains. We show that mimivirus L230 is capable of hydroxylating lysine and glycosylating the resulting hydroxylysine residues in a native mimivirus collagen acceptor substrate. Whereas in animals from sponges to humans the transfer of galactose to hydroxylysine in collagen is conserved, the mimivirus L230 enzyme transfers glucose to hydroxylysine, thereby defining a novel type of collagen glycosylation in nature. The presence of hydroxylysine in mimivirus proteins was confirmed by amino acid analysis of mimivirus recovered from A. polyphaga cultures. This work shows for the first time that collagen post-translational modifications are not confined to the domains of life. The utilization of glucose instead of the galactose found throughout animals as well as a bifunctional enzyme rather than two separate enzymes may represent a parallel evolutionary track in collagen biology. These results suggest that giant viruses may have contributed to the evolution of collagen biology.


Asunto(s)
Colágeno/metabolismo , Glicosiltransferasas/química , Mimiviridae/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Acanthamoeba/metabolismo , Secuencia de Aminoácidos , Animales , Baculoviridae/metabolismo , Clonación Molecular , Colágeno/química , Vectores Genéticos , Glicosilación , Humanos , Hidroxilisina/química , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Procesamiento Proteico-Postraduccional , Estructura Terciaria de Proteína , Homología de Secuencia de Aminoácido
16.
Bioorg Chem ; 39(5-6): 171-7, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21871647

RESUMEN

The N-hydroxylating flavoprotein monooxygenases are siderophore biosynthetic enzymes that catalyze the hydroxylation of the sidechain amino-group of ornithine or lysine or the primary amino-group of putrescine. This hydroxylated product is subsequently formylated or acylated and incorporated into the siderophore. Importantly, the modified amino-group is a hydroxamate and serves as an iron chelating moiety in the siderophore. This review describes recent work to characterize the ornithine hydroxylases from Pseudomonas aeruginosa (PvdA) and Aspergillus fumigatus (SidA) and the lysine hydroxylase from Escherichia coli (IucD). This includes summaries of steady and transient state kinetic data for all three enzymes and the X-ray crystallographic structure of PvdA.


Asunto(s)
Flavoproteínas/metabolismo , Oxigenasas de Función Mixta/química , Oxigenasas de Función Mixta/metabolismo , Secuencia de Aminoácidos , Aspergillus fumigatus/enzimología , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Flavina-Adenina Dinucleótido/metabolismo , Hidroxilación , Cinética , Datos de Secuencia Molecular , NADP/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Conformación Proteica , Pseudomonas aeruginosa/enzimología
17.
Gene Expr Patterns ; 11(1-2): 72-8, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-20888931

RESUMEN

The lysyl hydroxylase (LH) family of enzymes has important roles in the biosynthesis of collagen. In this paper we present the first description of Drosophila LH3 (dPlod), the only lysyl hydroxylase encoded in the fly genome. We have characterised in detail the developmental expression patterns of dPlod RNA and protein during embryogenesis. Consistent with its predicted function as a collagen-modifying enzyme, we find that dPlod is highly expressed in type-IV collagen-producing cells, particularly the haemocytes and fat body. Examination of dPlod subcellular localisation reveals that it is an endoplasmic reticulum resident protein, that partially overlaps with intracellular type-IV collagen. Furthermore, we show that dPlod is required for type-IV collagen secretion from haemocytes and fat body, and thus establish that LH3 enzyme function is conserved across widely separated animal phyla. Our findings, and the new tools we describe, establish the fly as an attractive model in which to study this important collagen biosynthesis enzyme.


Asunto(s)
Drosophila melanogaster/enzimología , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Secuencia de Aminoácidos , Animales , Colágeno/biosíntesis , Drosophila melanogaster/genética , Drosophila melanogaster/metabolismo , Datos de Secuencia Molecular , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Alineación de Secuencia
18.
J Mol Biol ; 401(2): 211-22, 2010 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-20684070

RESUMEN

Lysyl and prolyl hydroxylations are well-known post-translational modifications to animal and plant proteins with extracellular roles. More recent work has indicated that the hydroxylation of intracellular animal proteins may be common. JMJD6 catalyses the iron- and 2-oxoglutarate-dependent hydroxylation of lysyl residues in arginine-serine-rich domains of RNA splicing-related proteins. We report crystallographic studies on the catalytic domain of JMJD6 in complex with Ni(II) substituting for Fe(II). Together with mutational studies, the structural data suggest how JMJD6 binds its lysyl residues such that it can catalyse C-5 hydroxylation rather than Nepsilon-demethylation, as for analogous enzymes.


Asunto(s)
Histona Demetilasas con Dominio de Jumonji/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Secuencia de Bases , Dominio Catalítico , Cristalografía por Rayos X , Cartilla de ADN/genética , Humanos , Técnicas In Vitro , Hierro/metabolismo , Histona Demetilasas con Dominio de Jumonji/genética , Histona Demetilasas con Dominio de Jumonji/metabolismo , Ácidos Cetoglutáricos/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Proteínas Mutantes/química , Proteínas Mutantes/genética , Proteínas Mutantes/metabolismo , Níquel/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Pliegue de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido , Electricidad Estática
19.
J Biol Chem ; 284(45): 30917-24, 2009 Nov 06.
Artículo en Inglés | MEDLINE | ID: mdl-19762917

RESUMEN

Bruck syndrome is a rare autosomal recessive connective tissue disorder characterized by fragile bones, joint contractures, scoliosis, and osteoporosis. The telopeptides of bone collagen I are underhydroxylated in these patients, leading to abnormal collagen cross-linking. Three point mutations in lysyl hydroxylase (LH) 2, the enzyme responsible for the hydroxylation of collagen telopeptides, have been identified in Bruck syndrome. As none of them affects the residues known to be critical for LH activity, we studied their consequences at the molecular level by analyzing the folding and catalytic properties of the corresponding mutant recombinant polypeptides. Folding and oligomerization of the R594H and G597V mutants were abnormal, and their activity was reduced by >95% relative to the wild type. The T604I mutation did not affect the folding properties, although the mutant retained only approximately 8% activity under standard assay conditions. As the reduced activity was caused by a 10-fold increase in the K(m) for 2-oxoglutarate, the mutation interferes with binding of this cosubstrate. In the presence of a saturating 2-oxoglutarate concentration, the activity of the T604I mutant was approximately 30% of that of the wild type. However, the T604I mutant did not generate detectable amounts of hydroxylysine in the N-terminal telopeptide of a recombinant procollagen I chain when coexpressed in insect cells. The low activity of the mutant LH2 polypeptides is in accordance with the markedly reduced extent of collagen telopeptide hydroxylation in Bruck syndrome, with consequent changes in the cross-linking of collagen fibrils and severe abnormalities in the skeletal structures.


Asunto(s)
Enfermedades del Tejido Conjuntivo/enzimología , Mutación Missense , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/genética , Pliegue de Proteína , Animales , Línea Celular , Enfermedades del Tejido Conjuntivo/genética , Humanos , Cinética , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Spodoptera
20.
J Cell Mol Med ; 13(3): 508-21, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-18298658

RESUMEN

Lysyl hydroxylase (LH) isoform 3 is a post-translational enzyme possessing LH, collagen galactosyltransferase (GT) and glucosyltransferase (GGT) activities. We have demonstrated that LH3 is found not only intracellularly, but also on the cell surface and in the extracellular space, suggesting additional functions for LH3. Here we show that the targeted disruption of LH3 by siRNA causes a marked reduction of both glycosyltransferase activities, and the overexpression of LH3 in HT-1080 cells increases hydroxylation of lysyl residues and the subsequent galactosylation and glucosylation of hydroxylysyl residues. These data confirm the multi-functionality of LH3 in cells. Furthermore, treatment of cells in culture medium with a LH3 N-terminal fragment affects the cell behaviour, rapidly leading to arrest of growth and further to lethality if the fragment is glycosyltransferase-deficient, and leading to stimulation of proliferation if the fragment contains LH3 glycosyltransferase activities. The effect is reversible, the cells recovering after removal of the glycosyltransferase-deficient fragment. The findings were confirmed by overexpressing the full-length LH3 in native or mutated forms in the cells. The data indicate that the increase in proliferation depends on the glycosyltransferase activity of LH3. The overexpression of a glycosyltransferase-deficient mutant or targeted disruption of LH3 by siRNA in cells results in abnormal cell morphology followed by cell death. Our data clearly indicate that the deficiency of LH3 glycosyltransferase activities, especially in the extracellular space, causes growth arrest revealing the importance of the glycosyltransferase activities of LH3 for cell growth and viability, and identifying LH3 as a potential target for medical applications, such as cancer therapy.


Asunto(s)
Espacio Extracelular/enzimología , Glicosiltransferasas/metabolismo , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/metabolismo , Citoesqueleto de Actina/enzimología , Animales , Muerte Celular , Línea Celular , Proliferación Celular , Forma de la Célula , Supervivencia Celular , Medios de Cultivo , ADN Complementario/genética , Técnica del Anticuerpo Fluorescente , Galactosiltransferasas/metabolismo , Glicosilación , Humanos , Microtúbulos/enzimología , Fragmentos de Péptidos/química , Permeabilidad , Procolágeno-Lisina 2-Oxoglutarato 5-Dioxigenasa/química , ARN Interferente Pequeño/metabolismo
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