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1.
J Agric Food Chem ; 72(18): 10428-10438, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38660720

RESUMEN

Tebuconazole is a chiral triazole fungicide used globally in agriculture as a racemic mixture, but its enantiomers exhibit significant enantioselective dissimilarities in bioactivity and environmental behaviors. The steric hindrance caused by the tert-butyl group makes it a great challenge to synthesize tebuconazole enantiomers. Here, we designed a simple chemoenzymatic approach for the asymmetric synthesis of (R)-tebuconazole, which includes the biocatalytic resolution of racemic epoxy-precursor (2-tert-butyl-2-[2-(4-chlorophenyl)ethyl] oxirane, rac-1a) by Escherichia coli/Rpeh whole cells expressed epoxide hydrolase from Rhodotorula paludigensis (RpEH), followed by a one-step chemocatalytic synthesis of (R)-tebuconazole. It was observed that (S)-1a was preferentially hydrolyzed by E. coli/Rpeh, whereas (R)-1a was retained with a specific activity of 103.8 U/g wet cells and a moderate enantiomeric ratio (E value) of 13.4, which was remarkably improved to 43.8 after optimizing the reaction conditions. Additionally, a gram-scale resolution of 200 mM rac-1a was performed using 150 mg/mL E. coli/Rpeh wet cells, resulting in the retention of (R)-1a in a 97.0% ees, a 42.5% yields, and a 40.5 g/L/d space-time yield. Subsequently, the synthesis of highly optical purity (R)-tebuconazole (>99% ee) was easily achieved through the chemocatalytic ring-opening of the epoxy-precursor (R)-1a with 1,2,4-triazole. To elucidate insight into the enantioselectivity, molecular docking simulations revealed that the unique L-shaped substrate-binding pocket of RpEH plays a crucial role in the enantioselective recognition of bulky 2,2-disubstituted oxirane 1a.


Asunto(s)
Biocatálisis , Epóxido Hidrolasas , Proteínas Fúngicas , Fungicidas Industriales , Rhodotorula , Triazoles , Rhodotorula/enzimología , Rhodotorula/química , Rhodotorula/metabolismo , Triazoles/química , Triazoles/metabolismo , Fungicidas Industriales/química , Fungicidas Industriales/metabolismo , Fungicidas Industriales/síntesis química , Epóxido Hidrolasas/metabolismo , Epóxido Hidrolasas/química , Estereoisomerismo , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Simulación del Acoplamiento Molecular , Escherichia coli/enzimología , Escherichia coli/metabolismo
2.
Biochem Biophys Res Commun ; 551: 107-113, 2021 04 30.
Artículo en Inglés | MEDLINE | ID: mdl-33725571

RESUMEN

Site-directed mutagenesis (SDM), an indispensable method in molecular biology and protein engineering, is rather time-consuming and laborious. Protein engineering, especially that of enzymes, nowadays increasingly relies on rational design approaches in which both SDM and protein expression are the bottlenecks because they are generally based on the recombinant DNA technology. Here, we developed a new PCR-based mutagenesis method, DiRect, that achieves high performance in product quality (≥99% substitution) without recombinant DNA technology. We applied DiRect in combination with a cell-free protein expression system to an industrially relevant enzyme, nicotinamide adenine dinucleotide phosphate-dependent 3-quinuclidinone reductase from Rhodotorula rubra. In a single round of screening, 90 newly designed mutant proteins were produced within two days, and an unreported mutant (Q135I) exhibiting much higher thermostability than the wild-type enzyme was successfully identified within one extra day. Thus, DiRect is a simple, efficient, and potentially scalable SDM method.


Asunto(s)
Mutagénesis Sitio-Dirigida/métodos , Ingeniería de Proteínas/métodos , Sistema Libre de Células , Estabilidad de Enzimas , Mutación , NADP/metabolismo , Oxidorreductasas/química , Oxidorreductasas/genética , Oxidorreductasas/metabolismo , Rhodotorula/enzimología
3.
J Biosci Bioeng ; 131(6): 631-639, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33781676

RESUMEN

Linoleic acid (LA) has garnered much attention due to its potential applications in the oleochemical and nutraceutical industries. The oleaginous yeast Rhodotorula toruloides has outstanding lipogenecity, and is considered a potential alternative to the current plant-based platforms for LA production. Δ12-fatty acid desaturases (Δ12-Fads) are involved in LA synthesis in various fungi and yeasts, but their functions in R. toruloides remain poorly understood. To achieve the production of LA-rich lipids in R. toruloides, we investigated the function of the native Δ12-FAD (RtFAD2). First, the overexpression of RtFAD2 and its co-overexpression with RtFAD1 (encoding R. toruloides Δ9-Fad) and their effects on LA production in R. toruloides were investigated. The function of RtFad2 was confirmed by heterologous expression in Saccharomyces cerevisiae. Overexpression of RtFAD2 significantly elevated the LA contents and titers in the wild-type strain R. toruloides DMKU3-TK16 (TK16) and in a thermotolerant derivative of TK16 (L1-1). Additionally, overexpression of RtFAD2 in R. toruloides strains also increased the lipid titer and content. Overexpression of RtFAD1 was down-regulated in the RtFAD1 and RtFAD2 co-overexpressing strains, suggesting that the elevated LA content may function as a key regulator of RtFAD1 expression to control C18 fatty-acid synthesis in R. toruloides. We characterized the function of RtFAD2 and showed that its overexpression in R. toruloides increased the lipid and LA production. These findings may assist in the rational design of metabolic engineering related to LA or polyunsaturated fatty acid production in R. toruloides.


Asunto(s)
Ácido Graso Desaturasas/genética , Ácido Linoleico/biosíntesis , Lípidos/biosíntesis , Rhodotorula , Clonación Molecular , Ácido Graso Desaturasas/metabolismo , Ácidos Grasos Insaturados/metabolismo , Regulación Enzimológica de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Ácido Linoleico/metabolismo , Metabolismo de los Lípidos/genética , Ingeniería Metabólica/métodos , Organismos Modificados Genéticamente , Rhodotorula/enzimología , Rhodotorula/genética , Rhodotorula/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
4.
Biotechnol Appl Biochem ; 68(5): 1033-1043, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-32918838

RESUMEN

The protease was produced extracellularly in submerged fermentation by the yeast Rhodotorula oryzicola using different sources of nitrogen and maximum activity (6.54 × 10-3 U/mg) was obtained in medium containing 2% casein (w/v). Purification of the protease by gel filtration chromatography resulted in a 3.07-fold increase of specific protease activity. The optimal pH and temperature for enzyme activity were 6.51 and 63.04 °C, respectively. Incubation in the presence of some salts enhanced enzyme activity, which peaked under 0.01 M BaCl2 . The enzyme retained about 90% of enzymatic activity at temperatures 50-60 °C. The commercially available enzyme carriers evaluated, silica gel, Celite 545, and chitosan effectively immobilized the protease. The enzyme immobilized in Celite 545 retained 73.53% of the initial activity after 15 reuse cycles. These results are quite promising for large-scale production and immobilization of protease from R. oryzicola, as the high operational stability of the immobilized enzyme lowers production costs in biotechnological applications that require high enzymatic activity and stability under high temperatures.


Asunto(s)
Péptido Hidrolasas/metabolismo , Rhodotorula/enzimología , Biotecnología , Enzimas Inmovilizadas/química , Enzimas Inmovilizadas/metabolismo , Concentración de Iones de Hidrógeno , Péptido Hidrolasas/química , Temperatura
5.
Mar Drugs ; 18(11)2020 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-33143376

RESUMEN

Tannase plays a crucial role in many fields, such as the pharmaceutical industry, beverage processing, and brewing. Although many tannases derived from bacteria and fungi have been thoroughly studied, those with good pH stabilities are still less reported. In this work, a mangrove-derived yeast strain Rhodosporidium diobovatum Q95, capable of efficiently degrading tannin, was screened to induce tannase, which exhibited an activity of up to 26.4 U/mL after 48 h cultivation in the presence of 15 g/L tannic acid. The tannase coding gene TANRD was cloned and expressed in Yarrowia lipolytica. The activity of recombinant tannase (named TanRd) was as high as 27.3 U/mL. TanRd was purified by chromatography and analysed by SDS-PAGE, showing a molecular weight of 75.1 kDa. The specific activity of TanRd towards tannic acid was 676.4 U/mg. Its highest activity was obtained at 40 °C, with more than 70% of the activity observed at 25-60 °C. Furthermore, it possessed at least 60% of the activity in a broad pH range of 2.5-6.5. Notably, TanRd was excellently stable at a pH range from 3.0 to 8.0; over 65% of its maximum activity remained after incubation. Besides, the broad substrate specificity of TanRd to esters of gallic acid has attracted wide attention. In view of the above, tannase resources were developed from mangrove-derived yeasts for the first time in this study. This tannase can become a promising material in tannin biodegradation and gallic acid production.


Asunto(s)
Hidrolasas de Éster Carboxílico/metabolismo , Proteínas Fúngicas/metabolismo , Rhodotorula/enzimología , Taninos/metabolismo , Biodegradación Ambiental , Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/aislamiento & purificación , Clonación Molecular , Estabilidad de Enzimas , Proteínas Fúngicas/genética , Proteínas Fúngicas/aislamiento & purificación , Ácido Gálico/metabolismo , Concentración de Iones de Hidrógeno , Filogenia , Rhodotorula/genética , Especificidad por Sustrato , Temperatura , Humedales
6.
Appl Microbiol Biotechnol ; 104(14): 6199-6210, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32462245

RESUMEN

In order to provide more alternative epoxide hydrolases for industrial production, a novel cDNA gene Rpeh-encoding epoxide hydrolase (RpEH) of Rhodotorula paludigena JNU001 identified by 26S rDNA sequence analysis was amplified by RT-PCR. The open-reading frame (ORF) of Rpeh was 1236 bp encoding RpEH of 411 amino acids and was heterologously expressed in Escherichia coli BL21(DE3). The substrate spectrum of expressed RpEH showed that the transformant E. coli/Rpeh had excellent enantioselectivity to 2a, 3a, and 5a-10a, among which E. coli/Rpeh had the highest activity (2473 U/g wet cells) and wonderful enantioselectivity (E = 101) for 8a, and its regioselectivity coefficients, αR and ßS, toward (R)- and (S)-8a were 99.7 and 83.2%, respectively. Using only 10 mg wet cells/mL of E. coli/Rpeh, the near-perfect kinetic resolution of rac-8a at a high concentration (1000 mM) was achieved within 2.5 h, giving (R)-8a with more than 99% enantiomeric excess (ees) and 46.7% yield and producing (S)-8b with 93.2% eep and 51.4% yield with high space-time yield (STY) for (R)-8a and (S)-8b were 30.6 and 37.3 g/L/h.


Asunto(s)
Epóxido Hidrolasas/metabolismo , Compuestos Epoxi/metabolismo , Proteínas Fúngicas/metabolismo , Rhodotorula/enzimología , Secuencia de Aminoácidos , Epóxido Hidrolasas/genética , Epóxido Hidrolasas/aislamiento & purificación , Compuestos Epoxi/química , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/aislamiento & purificación , Cinética , Sistemas de Lectura Abierta , ARN Ribosómico/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Rhodotorula/genética , Estereoisomerismo , Especificidad por Sustrato
7.
Protein Expr Purif ; 167: 105518, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31669543

RESUMEN

The gene for glutathione S-transferase (GST) in Antarctic sea-ice yeast Rhodotorula mucilaginosa AN5 was cloned and expressed in Escherichia coli and named RmGST. Sequence analysis showed that the RmGST gene contained a 843 bp open reading frame, which encoded 280 amino acid residues with a calculated molecular mass of 30.4 kDa and isoelectric point of 5.40. RmGST has the typical C- and N-terminal double domains of glutathione S-transferase. Recombinant RmGST (rRmGST) was expressed in E. coli to produce heterologous protein that had a high specific activity of 60.2 U/mg after purification. The apparent Km values of rRmGST for glutathione and 1-chloro-2,4-dinitrobenzene were 0.35 mM and 0.40 mM, respectively. Optimum enzyme activity was measured at 35 °C and at pH 7.0 and complete inactivation was observed after incubation at 55 °C for 60 min rRmGST tolerated high salt concentrations (1.0 M NaCl) and was stable at pH 3.0. Additionally, the recombinant protein nearly kept whole activity in Hg2+ and Mn2+, and could tolerate Ca2+, Cu2+, Mg2+, Cd2+, EDTA, thiourea, urea, Tween-80, H2O2 and Triton X-100. Real-time quantitative PCR showed that relative expression of the GST gene was significantly increased under Cu2+ and low temperature stress. These results indicate that rRmGST is a typical low thermostable enzyme, while its other characteristics, heavy metal and low temperature tolerance, might be related to its Antarctic home environment.


Asunto(s)
Glutatión Transferasa , Cubierta de Hielo/microbiología , Rhodotorula , Adaptación Biológica , Regiones Antárticas , Clonación Molecular , Frío , Criobiología , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Glutatión Transferasa/biosíntesis , Glutatión Transferasa/genética , Glutatión Transferasa/aislamiento & purificación , Glutatión Transferasa/metabolismo , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Rhodotorula/enzimología , Rhodotorula/genética , Rhodotorula/metabolismo
8.
Enzyme Microb Technol ; 132: 109415, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31731965

RESUMEN

Aldo-keto reductases (AKRs) are nicotinamide-dependent enzymes that catalyze the transformation of aldehydes and ketones into alcohols. They are spread across all phyla, and those from microbial origin have proved to be highly robust and versatile biocatalysts. In this work, we have discovered and characterized a microbial AKR from the yeast Rhodotorula mucilaginosa by combining genome-mining and expression assays. The new enzyme, named AKR3B4, was expressed by a simple protocol in very good amounts. It displays a selective substrate profile exclusively transforming aldehydes into alcohols. Also, AKR3B4 shows very good stability at medium temperatures, in a broad range of pH values and in the presence of green organic solvents. Conversion assays demonstrate it is an excellent biocatalyst to be used in the synthesis of aromatic alcohols, and also to produce furan-3-ylmethanol and the valuable sweetener xylitol. These results show that AKR3B4 displays attractive features so as to be used in chemoenzymatic processes.


Asunto(s)
Aldo-Ceto Reductasas/genética , Aldo-Ceto Reductasas/metabolismo , Rhodotorula/enzimología , Rhodotorula/genética , Oxidorreductasas de Alcohol/metabolismo , Alcoholes/metabolismo , Aldehído Reductasa/metabolismo , Aldehídos/metabolismo , Clonación Molecular , Enzimas , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Especificidad por Sustrato
9.
Fungal Biol ; 123(12): 913-926, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31733734

RESUMEN

Trametes ljubarskyi produces multiple laccase isozymes under various physicochemical conditions. During co-cultivation condition Rhodotorula mucilaginosa showed inter-specific interactions with T. ljubarskyi and hypersecretion of laccases; however, the underlying molecular mechanism is less-known. The analysis of proteomics data of co-cultivated cultures revealed the mechanism of metabolic coupling during fungal-yeast interactions. The results suggested high score GO terms related to stimulus-response, protein binding, membrane components, transport channels, oxidoreductases, and antioxidants. The SEM studies confirmed the cellular communication and their inter-specific interactions. This study allows us to deepen and refine our understanding of fungal-yeast symbiotic interaction; further, it also establishes a mutual relation by metabolic coupling for 10-fold higher laccase isozyme secretion (6532 U/ml). The purified laccase isozymes showed acidic pH optima (pH 3-4), higher thermo-stability (60 °C), and broad enzyme kinetics (Km) values. Our study also provides an in-depth understanding of laccase isozymes and their potential to degrade synthetic dyes, which may help the fungi to survive in an adverse environment.


Asunto(s)
Isoenzimas/metabolismo , Lacasa/metabolismo , Interacciones Microbianas , Rhodotorula/crecimiento & desarrollo , Rhodotorula/metabolismo , Trametes/crecimiento & desarrollo , Trametes/metabolismo , Concentración de Iones de Hidrógeno , Microscopía Electrónica de Rastreo , Proteómica , Rhodotorula/citología , Rhodotorula/enzimología , Temperatura , Trametes/citología , Trametes/enzimología
10.
Prep Biochem Biotechnol ; 48(6): 506-513, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29932819

RESUMEN

Invertases are used for several purposes; one among these is the production of fructooligosaccharides. The aim of this study was to biochemically characterize invertase from industrial Saccharomyces cerevisiae CAT-1 and Rhodotorula mucilaginosa isolated from Cerrado soil. The optimum pH and temperature were 4.0 and 70 °C for Rhodotorula mucilaginosa invertase and 4.5 and 50 °C for Saccharomyces cerevisiae invertase. The pH and thermal stability from 3.0 to 10.5 and 75 °C for R. mucilaginosa invertase, respectively. The pH and thermal stability for S. cerevisiae CAT-1 invertase from 3.0 to 7.0, and 50 °C, respectively. Both enzymes showed good catalytic activity with 10% of ethanol in reaction mixture. The hydrolysis by invertases occurs predominantly when sucrose concentrations are ≤5%. On the other hand, the increase in the concentration of sucrose to levels above 10% results in the highest transferase activity, reaching about 13.3 g/L of nystose by S. cerevisiae invertase and 12.6 g/L by R. mucilaginosa invertase. The results demonstrate the high structural stability of the enzyme produced by R. mucilaginosa, which is an extremely interesting feature that would enable the application of this enzyme in industrial processes.


Asunto(s)
Oligosacáridos/biosíntesis , Rhodotorula/enzimología , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/enzimología , beta-Fructofuranosidasa/biosíntesis , beta-Fructofuranosidasa/metabolismo , Catálisis , Estabilidad de Enzimas , Etanol/metabolismo , Industria de Alimentos/métodos , Concentración de Iones de Hidrógeno , Hidrólisis , Industrias , Especificidad de la Especie , Sacarosa/metabolismo , Temperatura , beta-Fructofuranosidasa/química
11.
Biosensors (Basel) ; 8(1)2018 Mar 06.
Artículo en Inglés | MEDLINE | ID: mdl-29509674

RESUMEN

D-serine is the major D-amino acid in the mammalian central nervous system. As the dominant co-agonist of the endogenous synaptic NMDA receptor, D-serine plays a role in synaptic plasticity, learning, and memory. Alterations in D-serine are linked to neuropsychiatric disorders including schizophrenia. Thus, it is of increasing interest to monitor the concentration of D-serine in vivo as a relevant player in dynamic neuron-glia network activity. Here we present a procedure for amperometric detection of D-serine with self-referencing ceramic-based microelectrode arrays (MEAs) coated with D-amino acid oxidase from the yeast Rhodotorulagracilis (RgDAAO). We demonstrate in vitro D-serine recordings with a mean sensitivity of 8.61 ± 0.83 pA/µM to D-serine, a limit of detection (LOD) of 0.17 ± 0.01 µM, and a selectivity ratio of 80:1 or greater for D-serine over ascorbic acid (mean ± SEM; n = 12) that can be used for freely moving studies.


Asunto(s)
Técnicas Biosensibles/instrumentación , Cerámica/química , Técnicas Electroquímicas/instrumentación , Serina/análisis , Animales , D-Aminoácido Oxidasa/química , Enzimas Inmovilizadas/química , Diseño de Equipo , Límite de Detección , Masculino , Microelectrodos , Corteza Prefrontal/química , Ratas Long-Evans , Rhodotorula/enzimología
12.
J Basic Microbiol ; 58(4): 331-342, 2018 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29442377

RESUMEN

Psychrotolerant yeast Rhodotorula sp. Y-23 was isolated from the sediment core sub-samples of Nella Lake, East Antarctica. Isolate was screened for lipase production using plate assay method followed by submerged fermentation. Production optimization revealed the maximum lipase production by using palmolein oil (5% v/v), pH 8.0 and inoculum size of 2.5% v/v at 15 °C. The potential inducers for lipase were 1% w/v of galactose and KNO3 , and MnCl2 (0.1% w/v). Final productions with optimized conditions gave 5.47-fold increase in lipase production. Dialyzed product gave a purification fold of 5.63 with specific activity of 26.83 U mg-1 and 15.67% yields. This lipase was more stable at pH 5.0 and -20 °C whereas more activity was found at pH 8.0 and 35 °C. Stability was more in 50 mM Fe3+ , EDTA-Na (20 mM), sodium deoxycholate (20 mM), H2 O2 (1% v/v), and almost all organic solvents (50% v/v). Tolerance capacity at wider range of pH and temperature with having lower Km value i.e., 0.08 mg ml-1 and higher Vmax 385.68 U mg-1 at 15 °C make the studied lipase useful for industrial applications. Besides this, the lipase was compatible with commercially available detergents, and its addition to them increases lipid degradation performances making it a potential candidate in detergent formulation.


Asunto(s)
Frío , Proteínas Fúngicas/metabolismo , Sedimentos Geológicos/microbiología , Lipasa/metabolismo , Rhodotorula/enzimología , Solventes/farmacología , Regiones Antárticas , Detergentes/química , Estabilidad de Enzimas/efectos de los fármacos , Proteínas Fúngicas/biosíntesis , Proteínas Fúngicas/aislamiento & purificación , Proteínas Fúngicas/fisiología , Concentración de Iones de Hidrógeno , Cinética , Lipasa/biosíntesis , Lipasa/aislamiento & purificación , Lipasa/fisiología , Aceites de Plantas/metabolismo , Rhodotorula/clasificación , Rhodotorula/genética , Rhodotorula/aislamiento & purificación , Especificidad por Sustrato , Temperatura
13.
Prep Biochem Biotechnol ; 48(2): 165-171, 2018 Feb 07.
Artículo en Inglés | MEDLINE | ID: mdl-29313463

RESUMEN

The current study aims to assess the kinetics of population growth of Rhodotorula oryzicola and the production of ß-1,3-glucanase (EC 3.2.1.39) enzyme by this yeast. It also aims to obtain the optimum conditions of ß-1,3-glucanase enzymatic activity by varying the pH as well as to study the enzyme thermostability. R. oryzicola population doubled within 12 hr. During this period, 9.26 generations were obtained, with 1 hr and 29 min of interval from one generation to the other, with specific growth rate (µ) of 0.15 (hr-1). The entire microorganism growth process was monitored during ß-1,3-glucanases production, and the maximum value was obtained in the stationary phase in the 48-hr fermentation period. pH and temperature optimum values were 4.7 and 96°C, respectively. The enzyme maintained 88% of its activity when submitted to the temperature of 90°C for an incubation period of 1 hr. The results show that the enzyme can be used in industrial processes that require high temperatures and acidic pH.


Asunto(s)
Glucano 1,3-beta-Glucosidasa/metabolismo , Rhodotorula/enzimología , Estabilidad de Enzimas , Calor , Concentración de Iones de Hidrógeno , Microbiología Industrial , Cinética , Rhodotorula/crecimiento & desarrollo , Rhodotorula/metabolismo , Especificidad por Sustrato
14.
Microbiology (Reading) ; 164(1): 78-87, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29219805

RESUMEN

A molecular approach was applied to the study of the carotenoid biosynthetic pathway of Rhodotorula mucilaginosa. At first, functional annotation of the genome of R. mucilaginosa C2.5t1 was carried out and gene ontology categories were assigned to 4033 predicted proteins. Then, a set of genes involved in different steps of carotenogenesis was identified and those coding for phytoene desaturase, phytoene synthase/lycopene cyclase and carotenoid dioxygenase (CAR genes) proved to be clustered within a region of ~10 kb. Quantitative PCR of the genes involved in carotenoid biosynthesis showed that genes coding for 3-hydroxy-3-methylglutharyl-CoA reductase and mevalonate kinase are induced during exponential phase while no clear trend of induction was observed for phytoene synthase/lycopene cyclase and phytoene dehydrogenase encoding genes. Thus, in R. mucilaginosa the induction of genes involved in the early steps of carotenoid biosynthesis is transient and accompanies the onset of carotenoid production, while that of CAR genes does not correlate with the amount of carotenoids produced. The transcript levels of genes coding for carotenoid dioxygenase, superoxide dismutase and catalase A increased during the accumulation of carotenoids, thus suggesting the activation of a mechanism aimed at the protection of cell structures from oxidative stress during carotenoid biosynthesis. The data presented herein, besides being suitable for the elucidation of the mechanisms that underlie carotenoid biosynthesis, will contribute to boosting the biotechnological potential of this yeast by improving the outcome of further research efforts aimed at also exploring other features of interest.


Asunto(s)
Vías Biosintéticas/genética , Carotenoides/genética , Carotenoides/metabolismo , Genes Fúngicos/genética , Familia de Multigenes , Rhodotorula/genética , Transcripción Genética/genética , Activación Enzimática/genética , Regulación Enzimológica de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Genoma Fúngico , Cinética , Reacción en Cadena en Tiempo Real de la Polimerasa , Rhodotorula/enzimología , Rhodotorula/crecimiento & desarrollo , Rhodotorula/metabolismo
15.
Naturwissenschaften ; 105(1-2): 4, 2017 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-29247264

RESUMEN

Glutathione (GSH) fulfills a variety of metabolic functions, participates in oxidative stress response, and defends against toxic actions of heavy metals and xenobiotics. In this study, GSH was detected in Rhodosporidium diobovatum by high-performance liquid chromatography (HPLC). Then, two novel enzymes from R. diobovatum were characterized that convert glutamate, cysteine, and glycine into GSH. Based on reverse transcription PCR, we obtained the glutathione synthetase gene (GSH2), 1866 bp, coding for a 56.6-kDa protein, and the glutamate cysteine ligase gene (GSH1), 2469 bp, coding for a 90.5-kDa protein. The role of GSH1 and GSH2 for the biosynthesis of GSH in the marine yeast R. diobovatum was determined by deletions using the CRISPR-Cas9 nuclease system and enzymatic activity. These results also showed that GSH1 and GSH2 were involved in the production of GSH and are thus being potentially useful to engineer GSH pathways. Alternatively, pET-GSH constructed using vitro recombination could be used to detect the function of genes related to GSH biosynthesis. Finally, the fermentation parameters determined in the present study provide a reference for industrial GSH production in R. diobovatum.


Asunto(s)
Organismos Acuáticos/enzimología , Glutamato-Cisteína Ligasa/metabolismo , Glutatión Sintasa/metabolismo , Rhodotorula/enzimología , Organismos Acuáticos/genética , Glutamato-Cisteína Ligasa/genética , Glutatión/biosíntesis , Glutatión Sintasa/genética , Microbiología Industrial , Rhodotorula/genética , Eliminación de Secuencia
16.
Curr Protoc Chem Biol ; 9(2): 117-127, 2017 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-28628200

RESUMEN

Described here is a localized H2 O2 generation-detection system consisting of a yeast D-amino acid oxidase (DAAO) and two spectrally distinct variants of biosensor, HyPer2 and HyPerRed based on circularly permutated yellow and red fluorescent proteins, respectively, which enables spatiotemporal production and examination of the intracellular H2 O2 dynamics. The protocol describes using this system in a simple cell culture model. We provide detailed instructions on imaging of H2 O2 generated by the activated DAAO. The system can be easily optimized for various combinations of cell types, conditions and DAAO/sensor subcellular localizations. © 2017 by John Wiley & Sons, Inc.


Asunto(s)
Técnicas Biosensibles/métodos , Peróxido de Hidrógeno/metabolismo , Imagen Molecular/métodos , Aminoácido Oxidorreductasas/metabolismo , Biocatálisis , Supervivencia Celular , Células HEK293 , Células HeLa , Humanos , Espacio Intracelular/metabolismo , Rhodotorula/enzimología
17.
Lipids ; 52(8): 729-735, 2017 08.
Artículo en Inglés | MEDLINE | ID: mdl-28660529

RESUMEN

The intention of this study was to investigate the role of polyunsaturated fatty acids (PUFA) in the cold adaptation of Rhodosporidium kratochvilovae YM25235 by knockout of the Δ12/Δ15-fatty acid desaturase gene (RKD12) to inactivate Δ12/Δ15-fatty acid desaturase. Polymerase chain reaction (PCR) amplification was used to detect the genomic structure of RKD12 gene in YM25235. The RKD12 gene was knocked out by DNA homologous recombination to inhibit the biosynthesis of PUFA. Then, the contents of linoleic acid (LNA) and α-linolenic acid (ALA) after gene knockout were investigated using a gas chromatography-mass spectrometer, followed by determination of the growth rate and membrane fluidity of YM25235 at low temperature. After PCR amplification, a 1611 bp genomic fragment was amplified from YM25235. When the RKD12 gene was knocked out, the contents of LNA and ALA in YM25235 significantly decreased. The growth rate and membrane fluidity of YM25235 decreased significantly at low temperature. Inhibition of PUFA biosynthesis by RKD12 gene knockout influenced cold adaptation of YM25235 by decreasing the PUFA content in cell membranes and reducing the growth rate and membrane fluidity of YM25235 at low temperature.


Asunto(s)
Membrana Celular/metabolismo , Ácido Graso Desaturasas/genética , Ácidos Grasos Insaturados/biosíntesis , Rhodotorula/crecimiento & desarrollo , Adaptación Fisiológica , Frío , Proteínas Fúngicas/genética , Técnicas de Inactivación de Genes , Ácido Linoleico/análisis , Fluidez de la Membrana , Rhodotorula/enzimología , Rhodotorula/genética , Ácido alfa-Linolénico/análisis
18.
J Basic Microbiol ; 57(8): 680-690, 2017 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-28639705

RESUMEN

A novel superoxide dismutase gene from Antarctic yeast Rhodotorula mucilaginosa AN5 was cloned, sequenced, and then expressed in Escherichia coli. The R. mucilaginosa AN5 SOD (RmFeSOD) gene was 639 bp open reading frame in length, which encoded a protein of 212 amino acids with a deduced molecular mass of 23.5 kDa and a pI of 7.89. RmFeSOD was identified as iron SOD type with a natural status of homodimer. The recombinant RmFeSOD showed good pH stability in the pH 1.0-9.0 after 1 h incubation. Meanwhile, it was found to behave relatively high thermostability, and maintained more than 80% activity at 50 °C for 1 h. By addition of 1 mM metal ions, the enzyme activity increased by Zn2+ , Cu2+ , Mn2+ , and Fe3+ , and inhibited only by Mg2+ . RmFeSOD showed relatively low tolerance to some compounds, such as PMSF, SDS, Tween-80, Triton X-100, DMSO, ß-ME, and urea. However, DTT showed no inhibition to enzyme activity. Using copper stress experiment, the RmFeSOD recombinant E. coli exhibited better growth than non-recombinant bacteria, which revealed that RmFeSOD might play an important role in the adaptability of heavy metals.


Asunto(s)
Rhodotorula/enzimología , Superóxido Dismutasa/genética , Superóxido Dismutasa/metabolismo , Regiones Antárticas , Clonación Molecular , Estabilidad de Enzimas , Escherichia coli/genética , Expresión Génica , Concentración de Iones de Hidrógeno , Metales Pesados/farmacología , Peso Molecular , Sistemas de Lectura Abierta , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Rhodotorula/efectos de los fármacos , Rhodotorula/genética , Superóxido Dismutasa/aislamiento & purificación , Temperatura , Urea/farmacología
19.
J Agric Food Chem ; 65(3): 618-625, 2017 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-28054483

RESUMEN

Cross-linked enzyme aggregates (CLEAs) have recently emerged as a promising tool for enzyme immobilization because of their simplicity and low cost. However, a lack of good size and morphological control over the as-prepared CLEAs has limited their practical applications. For example, the prepared CLEAs exhibit amorphous large clusters that would cause significant mass-transfer limitations, which lead to a low catalytic efficiency. Here, inspired by biomineralized core-shell structures in nature, we develop a novel mesoporous spherical CLEA with a biosilica shell by using phenylalanine ammonia lyase based on CaCO3 microtemplates and biomimetic mineralization. The resultant CLEAs exhibited a spherical structure with good monodispersity instead of the amorphous clusters of conventional CLEAs and showed activity higher than that of conventional CLEAs. Moreover, the thermostability, tolerance against denaturants, and mechanical stability of the spherical CLEAs with a biosilica shell were enhanced significantly compared with those of conventional CLEAs. In particular, the spherical CLEAs with a biosilica shell retained 70% of their original activity after 13 cycles, whereas the conventional CLEAs retained only 35% of their original activity. This approach could be an efficient strategy for improving the catalytic properties of CLEAs.


Asunto(s)
Proteínas Fúngicas/química , Fenilanina Amoníaco-Liasa/química , Rhodotorula/enzimología , Dióxido de Silicio/química , Biocatálisis , Reactivos de Enlaces Cruzados/química , Estabilidad de Enzimas , Enzimas Inmovilizadas/química , Concentración de Iones de Hidrógeno , Cinética , Rhodotorula/química
20.
Enzyme Microb Technol ; 96: 151-156, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27871376

RESUMEN

Phenylalanine ammonia lyase (E.C.4.3.1.24, PAL) activity of Rhodotorula glutinis yeast has been demonstrated in four commonly used ionic liquids. PAL forward reaction was carried out in 1-butyl-3-methylimidazolium methyl sulfate ([BMIM][MeSO4]), 1-butyl-3-methylimidazolium tetrafluoroborate ([BMIM][BF4]), 1-butyl-3-methylimidazolium hexafluorophosphate ([BMIM][PF6]) and 1-butyl-3-methylimidazolium lactate ([BMIM][lactate]). Our experiments have revealed that PAL is catalytically active in ionic liquids and the enzyme activity in ([BMIM][PF6]) is comparable to that obtained in aqueous buffer medium. Different conditions were optimized for maximal PAL forward activity including time of incubation (30.0min)L-phenylalanine substrate concentration (30.0mM), nature of buffer (50.0mM Tris-HCl), pH (9.0), temperature (37°C), and speed of agitation (100 rev min-1). Under these optimized conditions, about 83% conversion of substrate to product was obtained for the PAL forward reaction that was determined using UV spectroscopy at 290nm. PAL reverse reaction in ([BMIM][PF6]) was determined spectrophotometrically at 520nm; and about 59% substrate conversion was obtained. This data provides further knowledge in enzyme biocatalysis in non-aqueous media, and may be of importance when studying the function of other oligomeric/multimeric proteins and enzymes in ionic liquids.


Asunto(s)
Proteínas Fúngicas/metabolismo , Fenilanina Amoníaco-Liasa/metabolismo , Rhodotorula/enzimología , Biocatálisis , Tampones (Química) , Proteínas Fúngicas/química , Concentración de Iones de Hidrógeno , Imidazoles/química , Líquidos Iónicos/química , Cinética , Fenilanina Amoníaco-Liasa/química , Estructura Cuaternaria de Proteína , Solventes/química
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