Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 64
Filtrar
Más filtros










Base de datos
Intervalo de año de publicación
1.
ISME J ; 15(11): 3384-3398, 2021 11.
Artículo en Inglés | MEDLINE | ID: mdl-34054125

RESUMEN

Photoferrotrophy allows anoxygenic phototrophs to use reduced iron as an electron donor for primary productivity. Recent work shows that freshwater photoferrotrophs can use electrons from solid-phase conductive substances via phototrophic extracellular electron uptake (pEEU), and the two processes share the underlying electron uptake mechanism. However, the ability of marine phototrophs to perform photoferrotrophy and pEEU, and the contribution of these processes to primary productivity is largely unknown. To fill this knowledge gap, we isolated 15 new strains of the marine anoxygenic phototroph Rhodovulum sulfidophilum on electron donors such as acetate and thiosulfate. We observed that all of the R. sulfidophilum strains isolated can perform photoferrotrophy. We chose strain AB26 as a representative strain to study further, and find that it can also perform pEEU from poised electrodes. We show that during pEEU, AB26 transfers electrons to the photosynthetic electron transport chain. Furthermore, systems biology-guided mutant analysis shows that R. sulfidophilum AB26 uses a previously unknown diheme cytochrome c protein, which we call EeuP, for pEEU but not photoferrotrophy. Homologs of EeuP occur in a range of widely distributed marine microbes. Overall, these results suggest that photoferrotrophy and pEEU contribute to the biogeochemical cycling of iron and carbon in marine ecosystems.


Asunto(s)
Electrones , Rhodovulum , Transporte Biológico , Ecosistema , Rhodovulum/genética
2.
N Biotechnol ; 62: 10-17, 2021 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-33333263

RESUMEN

In the present study, the ability of the marine bacterium Rhodovulum sulfidophilum DSM-1374 to convert, via photo-fermentative process, certain organic acids such as single carbon source (acetate, lactate, malate and succinate) into polyhydroxyalkanoate accumulations within bacterial cells is evaluated. The main goal of the investigation was poly-3-hydroxybutyrate (P3HB) synthesis by a photo-fermentative process. Of the four carbon sources, only succinate simultaneously produced P3HB and H2 (268 mg/L and 1085 mL/L respectively). Malate was the least productive source for P3HB; the other carbon sources (acetate and lactate) produced a significant amount of polymer (596 mg P3HB/L for acetate and 716 mg P3HB/L for lactate) when R. sulfidophilum was cultured in batch growth conditions. Cumulative P3HB increased significantly when the bacterium was grown under two steps: nutrient sufficient conditions (step 1) followed by macronutrient deficient conditions (step 2). The highest cumulative P3HB was observed at the end of step 2 (1000 mg/L) when R. sulfidophilum was fed with lactate under phosphorus starvation. When grown over 1200 h, under a semi-continuous regimen, the harvested dry-biomass reached a constant content of P3HB (39.1 ± 1.6 % of cell dry-weight), in the semi-steady state condition. Since lactate is an abundant byproduct of world industries, it can be used to mitigate the environmental impact in a modern circular bio-economy.


Asunto(s)
Hidroxibutiratos/metabolismo , Poliésteres/metabolismo , Rhodovulum/metabolismo , Fermentación , Hidroxibutiratos/química , Poliésteres/química , Rhodovulum/citología
3.
Chemosphere ; 266: 128998, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33308837

RESUMEN

Di-butyl phthalate (DBP) is an extensively applied synthetic plasticizer, toxic organic compound with elevated concentrations in aquatic and terrestrial ecosystem that cause serious risk to the human health. A marine bacterium Rhodovulum sp. DBP07 isolated from sea water with proficient of efficiently degrading DBP. The maximum DBP degradation (70.2%) and the cell growth (1.3 OD600nm) were observed at 600 mg/L. The DBP degradation characteristics of the isolate Rhodovulum sp. DBP07 with diverse preliminary concentrations of DBP was found to be 200 ˃ 400 ˃ 600 ˂ 800 ˂ 1000 mg/L DBP. Glucose was identified as most favorable nutrient factor for the enhanced growth and showed 79.8 and 77.4% of degradation rate at 5.0 and 2.0 g/L respectively. The influence of the carbon sources on DBP degradation was found to be Glucose ˃ fructose ˃ sucrose ˃ maltose ˃ lactose ˃ citric acid ˃ starch. Box-Behnken (BBD) statistical optimization results showed enhanced DBP biodegradation rate (91.1%) at pH 7.0, 3% of NaCl concentration with 3 days of incubation. Two intermediate compounds were observed in the retention times of 10.8 and 12.2 which are identified as diethyl phthalate (DEP) and mono-nbutyl phthalate (MBP) using Gas chromatography mass spectroscopy (GC-MS). Furthermore, the phthalate (pht) gene expression pattern under DBP stress was analyzed using RT-qPCR and the maximum fold change (5.7 fold) was observed at 3 day of incubation. Overall, the observed results indicate the possibility of utilizing Rhodovulum sp. for remediation of DBP contaminated environment.


Asunto(s)
Ácidos Ftálicos , Rhodovulum , Biodegradación Ambiental , Dibutil Ftalato , Ecosistema , Cromatografía de Gases y Espectrometría de Masas , Humanos
4.
J Biol Chem ; 296: 100081, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33199371

RESUMEN

Monomethylamine (MMA) is an important climate-active oceanic trace gas and ubiquitous in the oceans. γ-Glutamylmethylamide synthetase (GmaS) catalyzes the conversion of MMA to γ-glutamylmethylamide, the first step in MMA metabolism in many marine bacteria. The gmaS gene occurs in ∼23% of microbial genomes in the surface ocean and is a validated biomarker to detect MMA-utilizing bacteria. However, the catalytic mechanism of GmaS has not been studied because of the lack of structural information. Here, the GmaS from Rhodovulum sp. 12E13 (RhGmaS) was characterized, and the crystal structures of apo-RhGmaS and RhGmaS with different ligands in five states were solved. Based on structural and biochemical analyses, the catalytic mechanism of RhGmaS was explained. ATP is first bound in RhGmaS, leading to a conformational change of a flexible loop (Lys287-Ile305), which is essential for the subsequent binding of glutamate. During the catalysis of RhGmaS, the residue Arg312 participates in polarizing the γ-phosphate of ATP and in stabilizing the γ-glutamyl phosphate intermediate; Asp177 is responsible for the deprotonation of MMA, assisting the attack of MMA on γ-glutamyl phosphate to produce a tetrahedral intermediate; and Glu186 acts as a catalytic base to abstract a proton from the tetrahedral intermediate to finally generate glutamylmethylamide. Sequence analysis suggested that the catalytic mechanism of RhGmaS proposed in this study has universal significance in bacteria containing GmaS. Our results provide novel insights into MMA metabolism, contributing to a better understanding of MMA catabolism in global carbon and nitrogen cycles.


Asunto(s)
Ligasas de Carbono-Nitrógeno/metabolismo , Glutamatos/metabolismo , Adenosina Trifosfato/metabolismo , Catálisis , Escherichia coli/metabolismo , Ácido Glutámico/metabolismo , Magnesio/metabolismo , Metilaminas/metabolismo , Microscopía Electrónica , Rhodovulum/metabolismo
5.
Commun Biol ; 3(1): 357, 2020 07 08.
Artículo en Inglés | MEDLINE | ID: mdl-32641733

RESUMEN

Photosynthetic microorganisms such as cyanobacteria, purple bacteria and microalgae have attracted great interest as promising platforms for economical and sustainable production of bioenergy, biochemicals, and biopolymers. Here, we demonstrate heterotrophic production of spider dragline silk proteins, major ampullate spidroins (MaSp), in a marine photosynthetic purple bacterium, Rhodovulum sulfidophilum, under both photoheterotrophic and photoautotrophic growth conditions. Spider silk is a biodegradable and biocompatible material with remarkable mechanical properties. R. sulfidophilum grow by utilizing abundant and renewable nonfood bioresources such as seawater, sunlight, and gaseous CO2 and N2, thus making this photosynthetic microbial cell factory a promising green and sustainable production platform for proteins and biopolymers, including spider silks.


Asunto(s)
Reactores Biológicos , Fibroínas/biosíntesis , Rhodovulum/metabolismo , Animales , Reactores Biológicos/microbiología , Fibroínas/genética , Fibroínas/aislamiento & purificación , Fibroínas/ultraestructura , Microorganismos Modificados Genéticamente/genética , Microorganismos Modificados Genéticamente/metabolismo , Microscopía Electrónica de Rastreo , Fotosíntesis , Rhodovulum/genética , Arañas
6.
Appl Microbiol Biotechnol ; 104(5): 2007-2015, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31927760

RESUMEN

Rhodovulum sulfidophilum DSM-1374 is a potential producer of polyester when growing in phototrophic conditions. The present study investigated on a polyester product (P3HB) by culturing Rhodovulum sulfidophilum DSM-1374 in two different photobioreactors (PBR-1 and PBR-2) both with 4-L working volumes. PBR-1 is equipped with an internal rotor having 4 paddles to mix the bacterial culture while PBR-2 has an internal coil-shaped rotor. After selecting PBR-1, which best performed in the preliminary experiment, the effect of different stressing growth conditions as pH (7.0, 8.0, and 9.0), temperature (25, 30, and 35 °C), and medium salinity (1.5, 2.5, 3.5, and 4.5%) were tested. When the pH of the culture was set to 8.0, the capability of the bacterium to synthetize the polyester increased significantly reaching a concentration of 412 mg (P3HB)/L; the increase of the pH at 9.0 caused a reduction of the P3HB concentration in the culture. The medium salinity of 4.5% was the best stress-growth condition to reach the highest concentration of polyester in the culture (820 ± 50 mg (P3HB)/L) with a P3HB mass fraction in the dry biomass of 33 ± 1.5%. Stresses caused by culture temperature are another potential parameter that could increase the synthesis of P3HB.


Asunto(s)
Medios de Cultivo/química , Poliésteres/metabolismo , Rhodovulum/metabolismo , Biomasa , Medios de Cultivo/metabolismo , Concentración de Iones de Hidrógeno , Rhodovulum/crecimiento & desarrollo , Salinidad , Temperatura
7.
Microbiologyopen ; 9(1): e00953, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31638342

RESUMEN

Marine purple photosynthetic bacteria are ideal organisms for the production of useful materials at reduced costs and contributing to a sustainable society because they can utilize sunlight, seawater, and components of air, including carbon dioxide and nitrogen gases, for their growth. However, conjugation is the only applicable method for the transformation of marine purple photosynthetic bacteria so far. Here, we examined a calcium chloride-mediated method for the transformation of marine purple photosynthetic bacteria. Plasmid DNAs containing the kanamycin resistance gene were successfully transferred into chemically competent cells of two strains of marine purple photosynthetic bacteria (Rhodovulum sulfidophilum and Roseospira marina). Heat shock treatment increased the transformation efficiency in R. sulfidophilum, whereas the addition of cell-penetrating peptide did not improve it. We also found that prolonged incubation in agar plates containing kanamycin led to spontaneous mutation of the 16S rRNA, resulting in kanamycin resistance in R. marina. Thus, we developed an efficient and facile transformation method using chemically competent cells of marine purple photosynthetic bacteria with calcium chloride.


Asunto(s)
Técnicas de Transferencia de Gen , Resistencia a la Kanamicina/genética , Rhodospirillaceae/genética , Rhodovulum/genética , Transformación Bacteriana/genética , Cloruro de Calcio/química , ADN Bacteriano/química , ADN Bacteriano/genética , Respuesta al Choque Térmico/fisiología , Plásmidos/genética , Agua de Mar/microbiología , Microbiología del Agua
8.
PLoS One ; 14(4): e0212654, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31034524

RESUMEN

Polyhydroxyalkanoates (PHAs) are a group of natural biopolyesters that resemble petroleum-derived plastics in terms of physical properties but are less harmful biologically to the environment and humans. Most of the current PHA producers are heterotrophs, which require expensive feeding materials and thus contribute to the high price of PHAs. Marine photosynthetic bacteria are promising alternative microbial cell factories for cost-effective, carbon neutral and sustainable production of PHAs. In this study, Rhodovulum sulfidophilum, a marine photosynthetic purple nonsulfur bacterium with a high metabolic versatility, was evaluated for cell growth and PHA production under the influence of various media components found in previous studies. We evaluated iron, using ferric citrate, as another essential factor for cell growth and efficient PHA production and confirmed that PHA production in R. sulfidophilum was growth-associated under microaerobic and photoheterotrophic conditions. In fact, a subtle amount of iron (1 to 2 µM) was sufficient to promote rapid cell growth and biomass accumulation, as well as a high PHA volumetric productivity during the logarithmic phase. However, an excess amount of iron did not enhance the growth rate or PHA productivity. Thus, we successfully confirmed that an optimum concentration of iron, an essential nutrient, promotes cell growth in R. sulfidophilum and also enhances PHA utilization.


Asunto(s)
Hierro/metabolismo , Fotosíntesis/genética , Polihidroxialcanoatos/biosíntesis , Rhodovulum/metabolismo , Proteínas Bacterianas/metabolismo , Biomasa , Carbono/metabolismo , Polihidroxialcanoatos/metabolismo , Rhodovulum/crecimiento & desarrollo
9.
Microbiol Res ; 215: 130-140, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30172299

RESUMEN

Biofixation of CO2 is being extensively investigated to solve the global warming problem. Purple non-sulfur bacteria are fast growers that consume CO2 and produce beneficial biomass. Better the growth at higher CO2 levels, more efficient are the strains for biofixation. Nine among fifty strains that were analyzed at elevated CO2 levels responded with better growth. Considering its enhanced growth at high CO2 and metabolic versatility, Rhodovulum viride strain JA756 was chosen to make further studies. Strain JA756 tolerates up to 50% (v/v) CO2 with its optimum between 20-40% (v/v), yielding a biomass of 3.4 g. L-1. The pattern of specific enzyme activity of carbonic anhydrase corresponded well with that of its growth. To gain insights into the genomic composition and genes related to carbonic anhydrases and CO2 fixation, draft genome sequencing of JA756 was carried out which revealed the presence of two non-homologous genes encoding for ß and γ carbonic anhydrases, both of which are assumed to be implicated in maintaining intracellular inorganic carbon concentration at equilibrium. Most of the genes involved in the Calvin pathway, reductive tricarboxylic acid pathway, 3-hydroxypropionate bicycle and C4 pathways were found in the draft genome. While the experimental determinations of active roles of two of these pathways are still underway, the expression of key genes of Calvin and C4 pathway suggest their functional role in the organism. Owing to its metabolic versatility, JA756 can be advantageous for biological CO2 assimilation facilities located by the coastline, inland and also at wide ranges of CO2 concentrations.


Asunto(s)
Ciclo del Carbono/fisiología , Dióxido de Carbono/metabolismo , Anhidrasas Carbónicas/metabolismo , Rhodovulum/enzimología , Rhodovulum/metabolismo , Procesos Autotróficos/genética , Procesos Autotróficos/fisiología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Biomasa , Carbono/metabolismo , Ciclo del Carbono/genética , Dióxido de Carbono/administración & dosificación , Dióxido de Carbono/farmacología , Anhidrasas Carbónicas/genética , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Genes Bacterianos/genética , Calentamiento Global , Cinética , Ácido Láctico/análogos & derivados , Ácido Láctico/metabolismo , Redes y Vías Metabólicas/efectos de los fármacos , Redes y Vías Metabólicas/fisiología , Fotosíntesis/genética , Rhodovulum/genética , Rhodovulum/crecimiento & desarrollo , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido
10.
Biosci Biotechnol Biochem ; 82(10): 1683-1693, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30001674

RESUMEN

Gram-negative bacterial quorum sensing is mainly regulated by an extracellularly produced N-acylhomoserine lactone (AHL). AHL consists of a lactone ring and an acyl chain, which generally varies from C4 to C18 in length and affords species-specific variety. In this study, we developed an ultra-high performance liquid chromatography tandem mass spectrometry system and detected two kinds of long chain AHLs with chain length C20 from the reverse-phase thin layer chromatography-fractionated cultured supernatant of the marine photosynthetic bacterium Rhodovulum sulfidophilum. By fragmentation search analysis to detect compounds with a homoserine lactone ring moiety for data dependent acquisition, a minor AHL, presumed to be 3-OH-C18-homoserine lactone (HSL), was also found. Among the detected C20-HSLs, 3-OH-C20-HSL was structurally identified and 3-OH-C20:1-HSL was strongly suggested. To our knowledge, this is the first report to show a novel AHL with the longest C20 acyl side chain found to date. ABBREVIATIONS: AGC: automatic gain control; AHL: N-acylhomoserine lactone; CD: cyclodextrin; CID: collision induced dissociation; DDA: data dependent acquisition; EPI: enhanced product ion; FISh: fragment ion search; HCD: high energy collisional dissociation; HSL: homoserine lactone; IT: injection time; LC: liquid chromatography; MS: mass spectrometry; PRM: parallel reaction monitoring; RP: reverse phase; SRM: selected reaction monitoring; TLC: thin layer chromatography; UHPLC: ultra high performance liquid chromatography.


Asunto(s)
Acil-Butirolactonas/química , Organismos Acuáticos/química , Rhodovulum/química , Agua de Mar/microbiología , Cromatografía Líquida de Alta Presión/métodos , Cromatografía en Capa Delgada/métodos , Medios de Cultivo , Rhodovulum/enzimología , Espectrometría de Masas en Tándem/métodos , beta-Galactosidasa/metabolismo
11.
J Gen Appl Microbiol ; 64(3): 103-107, 2018 Jul 23.
Artículo en Inglés | MEDLINE | ID: mdl-29526925

RESUMEN

The marine bacterium Rhodovulum sulfidophilum is a nonsulfur phototrophic bacterium, which is known to produce extracellular nucleic acids in soluble form in culture medium. In the present paper, constructing the response regulator ctrA-deficient mutant of R. sulfidophilum, we found that this mutation causes a significant decrease in the extracellular DNA production. However, by the introduction of a plasmid containing the wild type ctrA gene into the mutant, the amount of extracellular DNA produced was recovered. This is the first and clear evidence that the extracellular DNA production is actively controlled by the CtrA in R. sulfidophilum.


Asunto(s)
Proteínas Bacterianas/genética , ADN Bacteriano/biosíntesis , Espacio Extracelular/metabolismo , Regulación Bacteriana de la Expresión Génica/genética , Rhodovulum/genética , Rhodovulum/metabolismo , Organismos Acuáticos/genética , Organismos Acuáticos/metabolismo , ADN Bacteriano/metabolismo , Prueba de Complementación Genética , Mutagénesis Insercional , Plásmidos/genética , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
12.
Biosci Biotechnol Biochem ; 82(1): 81-89, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29297253

RESUMEN

Malate dehydrogenase (EC 1.1.1.37) was purified to homogeneity from the phototrophic purple non-sulfur bacterium Rhodovulum steppense A-20s. According to gel-chromatography and electrophoretic studies, malate dehydrogenase is present as a dimer, tetramer and octamer depending on cultivation conditions. In phototrophic aerobic conditions only the tetrameric form was present, in chemotrophic aerobic conditions all three forms were detected, while in the absence of oxygen the octameric form disappeared. The malate dehydrogenase oligomers are encoded by a single gene and composed of the same 35 kDa polypeptide but differ in pH and temperature optimum, in affinities to malate, oxaloacetate, NADH and NAD+ and in regulation by cations and citrate. By modulating the cultivation conditions, it has been established that the dimer participates in the glyoxylate cycle; the tetramer operates in the tricarboxylic acid cycle, and the octamer may be involved in the adaptation to oxidative stress.


Asunto(s)
Malato Deshidrogenasa/química , Procesos Fototróficos , Rhodovulum , Cationes , Citratos/química , Dimerización , Concentración de Iones de Hidrógeno , Malato Deshidrogenasa/clasificación , Malato Deshidrogenasa/genética , Estrés Oxidativo , Oxígeno/fisiología , Polimerizacion , Temperatura
13.
FEMS Microbiol Lett ; 365(3)2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29228187

RESUMEN

Extracellular nucleic acids of high molecular weight are detected ubiquitously in seawater. Recent studies have indicated that these nucleic acids are, at least in part, derived from active production by some bacteria. The marine bacterium Rhodovulum sulfidophilum is one of those bacteria. Rhodovulumsulfidophilum is a non-sulfur phototrophic marine bacterium that is known to form structured communities of cells called flocs, and to produce extracellular nucleic acids in culture media. Recently, it has been revealed that this bacterium produces gene transfer agent-like particles and that this particle production may be related to the extracellular nucleic acid production mechanism. This review provides a summary of recent physiological and genetic studies of these phenomena and also introduces a new method for extracellular production of artificial and biologically functional RNAs using this bacterium. In addition, artificial RNA production using Escherichia coli, which is related to this topic, will also be described.


Asunto(s)
Espacio Extracelular/metabolismo , Microbiología Industrial/métodos , Ácidos Nucleicos/metabolismo , ARN Bacteriano/biosíntesis , Rhodovulum/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Espacio Extracelular/química , Floculación , Ácidos Nucleicos/biosíntesis , Ácidos Nucleicos/genética , ARN/biosíntesis , ARN/genética , ARN Bacteriano/genética , Rhodovulum/genética , Rhodovulum/crecimiento & desarrollo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
14.
Bioengineered ; 8(5): 670-677, 2017 Sep 03.
Artículo en Inglés | MEDLINE | ID: mdl-28282262

RESUMEN

RNA interference-based technologies have emerged as an attractive and effective therapeutic option with potential application in diverse human diseases. These tools rely on the development of efficient strategies to obtain homogeneous non-coding RNA samples with adequate integrity and purity, thus avoiding non-targeted gene-silencing and related side-effects that impair their application onto pre-clinical practice. These RNAs have been preferentially obtained by in vitro transcription using DNA templates or via chemical synthesis. As an alternative to overcome the limitations presented by these methods, in vivo recombinant production of RNA biomolecules has become the focus in RNA synthesis research. Therefore, using pre-miR-29b as a model, here it is evaluated the time-course profile of Escherichia coli and Rhodovolum sulfidophilum microfactories to produce this microRNA. As the presence of major host contaminants arising from the biosynthesis process may have important implications in the subsequent downstream processing, it is also evaluated the production of genomic DNA and host total proteins. Considering the rapidly growing interest on these innovative biopharmaceuticals, novel, more cost-effective, simple and easily scaled-up technologies are highly desirable. As microRNA recombinant expression fulfills those requirements, it may take the leading edge in the methodologies currently available to obtain microRNAs for clinical or structural studies.


Asunto(s)
Reactores Biológicos/microbiología , Escherichia coli/genética , MicroARNs/biosíntesis , MicroARNs/genética , Recombinación Genética/genética , Rhodovulum/genética , Escherichia coli/metabolismo , Regulación Bacteriana de la Expresión Génica/genética , Humanos , Rhodovulum/metabolismo
15.
Mar Genomics ; 30: 93-95, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27746103

RESUMEN

A prophage namely vB_RhkS_P1 was induced by mitomycin C from Rhodovulum sp. P5 in the shallow-sea hydrothermal systems. The vB_RhkS_P1 had siphovirus-like morphology, and the average particle had a head size of approximately 61nm, and the tail length approximately 93nm. The genome of vB_RhkS_P1 was a size of 38.8kbp, 67.5% GC content, and 59 open reading frames. The genome contained Mu-like head structural genes but its genomic content was distinct from Mu or Mu-like phages.


Asunto(s)
Bacteriófagos/genética , Genoma Viral , Respiraderos Hidrotermales/microbiología , Respiraderos Hidrotermales/virología , Rhodovulum/virología , Bacteriófagos/aislamiento & purificación , Profagos/genética , Agua de Mar/microbiología , Agua de Mar/virología , Análisis de Secuencia de ADN , Taiwán
16.
Int J Syst Evol Microbiol ; 66(9): 3367-3371, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27260502

RESUMEN

A reddish-brown-pigmented, phototrophic bacterium, designated strain JA877T, was isolated from a brown algae mat sample collected from Jalandhar beach, Gujarat, India. On the basis of the 16S rRNA gene sequence, strain JA877T belongs to the class Alphaproteobacteria and is closely related to the type strains Rhodovulum viride JA756T (99.0 %), Rhodovulum sulfidophilum Hansen W4T (98.9 %), Rhodovulumvisakhapatnamense JA181T (98.8 %),Rhodovulum kholense JA297T (97.5 %) and Rhodovulum salis JA746T (97.0). However, strain JA877T showed only 20-45 % relatedness with its phylogenetic neighbours and had a ∆Tm between 5.8 and 7.0 °C. The major respiratory quinone was ubiquinone-10 (Q10), and the polar lipid profile was composed of the major components phosphatidylglycerol, phosphatidylethanolamine, an unidentified phospholipid, two unidentified sulfolipids and five unidentified lipids. The major fatty acids were C18 : 1ω5c, C18 : 1ω7c/C18 : 1ω6c, C16 : 0 and C18 : 0. The DNA G+C content was 64.5 mol%. On the basis of 16S rRNA gene sequence analysis, physiological data, and chemotaxonomic and molecular differences, strain JA877T is significantly different from other species of the genus Rhodovulum and represents a novel species, for which the name Rhodovulum algae sp. nov. is proposed. The type strain is JA877T (=LMG 29228T= KCTC 42963T).


Asunto(s)
Phaeophyceae/microbiología , Filogenia , Rhodovulum/clasificación , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , India , Lípidos/química , Hibridación de Ácido Nucleico , Fosfolípidos/química , ARN Ribosómico 16S/genética , Rhodovulum/genética , Rhodovulum/aislamiento & purificación , Análisis de Secuencia de ADN , Ubiquinona/química
17.
Prikl Biokhim Mikrobiol ; 52(2): 168-73, 2016.
Artículo en Ruso | MEDLINE | ID: mdl-27266245

RESUMEN

Three malate dehydrogenase isoforms (65-, 60-, and 71-fold purifications) with specific activities of 4.23, 3.88, and 4.56 U/mg protein were obtained in an electrophoretically homogenous state from Rhodovulum steppense bacteria strain A-20s chemotropically grown under aerobic conditions. The physicochemical and kinetic properties of malate dehydrogenase isoforms were determined. The molecular weight and the Michaelis constants were determined; the effect of hydrogen ions on the forward and reverse MDH reaction was studied. The results of the study demonstrated that the enzyme consists of subunits; the molecular weight of subunits was determined by SDS-PAGE.


Asunto(s)
Malato Deshidrogenasa/química , Isoformas de Proteínas/química , Subunidades de Proteína/química , Aerobiosis , Malato Deshidrogenasa/aislamiento & purificación , Malato Deshidrogenasa/metabolismo , Isoformas de Proteínas/metabolismo , Rhodovulum/enzimología
18.
Appl Microbiol Biotechnol ; 100(8): 3723-34, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26860940

RESUMEN

The present study reports the successful production of human pre-miR-29b both intra- and extracellularly in the marine phototrophic bacterium Rhodovulum sulfidophilum using recombinant RNA technology. In a first stage, the optimal transformation conditions (0.025 µg of plasmid DNA, with a heat-shock of 2 min at 35 °C) were established, in order to transfer the pre-miR-29b encoding plasmid to R. sulfidophilum host. Furthermore, the extracellular recovery of this RNA product from the culture medium was greatly improved, achieving quantities that are compatible with the majority of applications, namely for in vitro or in vivo studies. Using this system, the extracellular human pre-miR-29b concentration was approximately 182 µg/L, after 40 h of bacterial growth, and the total intracellular pre-miR-29b was of about 358 µg/L, at 32 h. At the end of the fermentation, it was verified that almost 87 % of cells were viable, indicating that cell lysis is minimized and that the extracellular medium is not highly contaminated with the host intracellular ribonucleases (RNases) and endotoxins, which is a critical parameter to guarantee the microRNA (miRNA) integrity. These findings demonstrate that pre-miRNAs can be produced by recombinant RNA technology, offering novel clues for the production of natural pre-miRNA agents for functional studies and RNA interference (RNAi)-based therapeutics.


Asunto(s)
Expresión Génica , MicroARNs/biosíntesis , Rhodovulum/metabolismo , Medios de Cultivo/metabolismo , Humanos , MicroARNs/genética , Plásmidos/genética , Plásmidos/metabolismo , Rhodovulum/genética
19.
Int J Syst Evol Microbiol ; 66(1): 165-171, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26475698

RESUMEN

A yellowish brown, phototrophic, purple non-sulfur bacterium, strain JA924T, was isolated in pure culture from a brackish water sample collected from an estuary. Single cells were oval to rod-shaped, non-motile and Gram-stain-negative and had a vesicular architecture of intracellular photosynthetic membranes. Bacteriochlorophyll-a and carotenoids of the spheroidene series were present as photosynthetic pigments. Photolithoautotrophy, chemo-organoheterotrophy and photo-organoheterotrophy were the growth modes observed. Strain JA924T had complex growth requirements. Strain JA924T was mesophilic and moderately halophilic. The DNA G+C content was 64 mol% (HPLC). The major cellular fatty acids were C18 : 1ω7c/C18 : 1ω6c, C16 : 0 and C18 : 0. The major quinone was ubiquinone-10 (Q-10). Phosphatidylglycerol, phosphatidylethanolamine, sulfolipid and an aminolipid were the main polar lipids of strain JA924T. EzTaxon-e blast searches based on the 16S rRNA gene sequence of JA924T revealed highest similarity with Rhodovulum mangrovi AK41T (98.19 %) and other members of the genus Rhodovulum ( < 95.71 %). Strain JA924T was further identified to be distantly related to Rhodovulum mangrovi AK41T ( < 29 % based on DNA-DNA hybridization and ΔTm (>5 °C). Phenotypic, chemotaxonomic and molecular differences indicate that strain JA924T represents a novel species of the genus Rhodovulum, for which the name Rhodovulum aestuarii sp. nov. is proposed. The type strain is JA924T ( = LMG 29031T = KCTC 15485T).


Asunto(s)
Filogenia , Rhodovulum/clasificación , Aguas Salinas , Técnicas de Tipificación Bacteriana , Bacterioclorofila A , Composición de Base , Carotenoides/química , ADN Bacteriano/genética , Estuarios , Ácidos Grasos/química , India , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Fosfolípidos/química , ARN Ribosómico 16S/genética , Rhodovulum/genética , Rhodovulum/aislamiento & purificación , Análisis de Secuencia de ADN , Ubiquinona/análogos & derivados , Ubiquinona/química
20.
Biophys J ; 108(11): 2713-20, 2015 Jun 02.
Artículo en Inglés | MEDLINE | ID: mdl-26039172

RESUMEN

Among the ultimate goals of protein physics, the complete, experimental description of the energy paths leading to protein conformational changes remains a challenge. Single protein fluorescence spectroscopy constitutes an approach of choice for addressing protein dynamics, and, among naturally fluorescing proteins, light-harvesting (LH) proteins from purple bacteria constitute an ideal object for such a study. LHs bind bacteriochlorophyll a molecules, which confer on them a high intrinsic fluorescence yield. Moreover, the electronic properties of these pigment-proteins result from the strong excitonic coupling between their bound bacteriochlorophyll a molecules in combination with the large energetic disorder due to slow fluctuations in their structure. As a result, the position and probability of their fluorescence transition delicately depends on the precise realization of the disorder of the set of bound pigments, which is governed by the LH protein dynamics. Analysis of these parameters using time-resolved single-molecule fluorescence spectroscopy thus yields direct access to the protein dynamics. Applying this technique to the LH2 protein from Rhodovulum (Rdv.) sulfidophilum, the structure-and consequently the fluorescence properties-of which depends on pH, allowed us to follow a single protein, pH-induced, reversible, conformational transition. Hence, for the first time, to our knowledge, a protein transition can be visualized through changes in the electronic structure of the intrinsic cofactors, at a level of a single LH protein, which opens a new, to our knowledge, route for understanding the changes in energy landscape that underlie protein function and adaptation to the needs of living organisms.


Asunto(s)
Complejos de Proteína Captadores de Luz/química , Concentración de Iones de Hidrógeno , Modelos Moleculares , Conformación Proteica , Rhodovulum/enzimología , Espectrometría de Fluorescencia
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA
...