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1.
Nat Commun ; 15(1): 3947, 2024 May 10.
Artículo en Inglés | MEDLINE | ID: mdl-38729951

RESUMEN

Gram-negative bacteria (GNB) are a major cause of neonatal sepsis in low- and middle-income countries (LMICs). Although the World Health Organization (WHO) reports that over 80% of these sepsis deaths could be prevented through improved treatment, the efficacy of the currently recommended first- and second-line treatment regimens for this condition is increasingly affected by high rates of drug resistance. Here we assess three well known antibiotics, fosfomycin, flomoxef and amikacin, in combination as potential antibiotic treatment regimens by investigating the drug resistance and genetic profiles of commonly isolated GNB causing neonatal sepsis in LMICs. The five most prevalent bacterial isolates in the NeoOBS study (NCT03721302) are Klebsiella pneumoniae, Acinetobacter baumannii, E. coli, Serratia marcescens and Enterobacter cloacae complex. Among these isolates, high levels of ESBL and carbapenemase encoding genes are detected along with resistance to ampicillin, gentamicin and cefotaxime, the current WHO recommended empiric regimens. The three new combinations show excellent in vitro activity against ESBL-producing K. pneumoniae and E. coli isolates. Our data should further inform and support the clinical evaluation of these three antibiotic combinations for the treatment of neonatal sepsis in areas with high rates of multidrug-resistant Gram-negative bacteria.


Asunto(s)
Acinetobacter baumannii , Antibacterianos , Bacterias Gramnegativas , Infecciones por Bacterias Gramnegativas , Klebsiella pneumoniae , Pruebas de Sensibilidad Microbiana , Sepsis Neonatal , Humanos , Antibacterianos/uso terapéutico , Antibacterianos/farmacología , Sepsis Neonatal/microbiología , Sepsis Neonatal/tratamiento farmacológico , Recién Nacido , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Gramnegativas/genética , Bacterias Gramnegativas/aislamiento & purificación , Infecciones por Bacterias Gramnegativas/tratamiento farmacológico , Infecciones por Bacterias Gramnegativas/microbiología , Acinetobacter baumannii/efectos de los fármacos , Acinetobacter baumannii/aislamiento & purificación , Acinetobacter baumannii/genética , Klebsiella pneumoniae/efectos de los fármacos , Klebsiella pneumoniae/aislamiento & purificación , Klebsiella pneumoniae/genética , Amicacina/farmacología , Amicacina/uso terapéutico , Fosfomicina/farmacología , Fosfomicina/uso terapéutico , beta-Lactamasas/genética , beta-Lactamasas/metabolismo , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Países en Desarrollo , Farmacorresistencia Bacteriana Múltiple/genética , Quimioterapia Combinada , Serratia marcescens/efectos de los fármacos , Serratia marcescens/genética , Serratia marcescens/aislamiento & purificación , Enterobacter cloacae/efectos de los fármacos , Enterobacter cloacae/genética , Enterobacter cloacae/aislamiento & purificación , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo
2.
Bol Med Hosp Infant Mex ; 81(2): 114-117, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38768495

RESUMEN

BACKGROUND: Pink coloration of breast milk is uncommon and it´s associated with colonization by Serratia marcescens, which is most frequently isolated in intensive care settings. Misinterpretation of the pink coloration may lead to premature cessation of breastfeeding. The objective is to present four cases of pink discoloration. METHODS: Two retrospective and two prospective cases of pink discoloration in breast milk are described, which were reported to the lead author. RESULTS: Four healthy mother-infant pairs with documented pink discoloration are presented. S. marcescens was isolated from breast milk samples. All four infants were asymptomatic and underwent enterobacteria cultures. The mothers received outpatient antibiotic treatment, and two infants received treatment as well. Subsequent cultures yielded negative results, and the pink discoloration ceased. All mothers successfully resumed breastfeeding. CONCLUSIONS: There are very few reported cases of pink breast milk in the global literature. Colonization by S. marcescens is not an indication for discontinuation of breastfeeding.


INTRODUCCIÓN: La coloración rosa de la leche materna es poco frecuente y está asociada a colonización por Serratia marcescens. Se aísla con mayor frecuencia en entornos de cuidados intensivos. La desinformación por la coloración rosa puede conducir a una terminación prematura de la lactancia. El objetivo es presentar cuatro casos de coloración rosa de la leche materna. MÉTODOS: Se describen dos casos retrospectivos y dos prospectivos de presentación de leche materna de color rosa. Los casos fueron reportados a la autora principal. RESULTADOS: Se presentan cuatro binomios sanos con reporte de coloración rosa. Se aisló S. marcescens en una muestra de leche materna. Los cuatro lactantes eran asintomáticos y tuvieron cultivos para la enterobacteria. Las madres fueron tratadas con antibiótico ambulatorio. Dos lactantes recibieron tratamiento. Todos los cultivos posteriores fueron negativos y la coloración rosa cesó. Todos reanudaron la lactancia materna de forma exitosa. CONCLUSIONES: Existen muy pocos casos de leche de color rosa reportados en la literatura mundial. La colonización por S. marcescens no es una indicación de suspensión de la lactancia.


Asunto(s)
Antibacterianos , Lactancia Materna , Leche Humana , Infecciones por Serratia , Serratia marcescens , Humanos , Serratia marcescens/aislamiento & purificación , Infecciones por Serratia/microbiología , Infecciones por Serratia/diagnóstico , Femenino , Leche Humana/microbiología , Recién Nacido , Estudios Retrospectivos , Adulto , Antibacterianos/administración & dosificación , Estudios Prospectivos , Masculino , Lactante
3.
In Vivo ; 38(3): 1229-1235, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38688617

RESUMEN

BACKGROUND/AIM: Given the characteristics of Serratia marcescens (S. marcescens), this study aimed at investigating its presence in the hands and contact lens cases of orthokeratology wearers, along with the status of bacterial contamination. PATIENTS AND METHODS: The 39 patients received the questionnaires about the background of orthokeratology and hygiene habits. A total of 39 contact lens cases and 39 hand samples from the patients were collected at Show Chwan Memorial Hospital from June to August in 2020 and sent to National Chung Cheng University for DNA extraction and PCR identification. RESULTS: The results indicated a detection rate of 5.13% for S. marcescens in the contact lens cases and 12.82% in the hand samples. Additionally, 66.67% of contact lens case samples and 30.77% of hand samples found positive for 16s bacterial amplicons. The relationship between hand contamination and the duration of contact lens usage were revealed for both S. marcescens (p=0.021) and 16s bacterial amplicons (p=0.048). CONCLUSION: The results indicated that hand hygiene is more critical than focusing on contact lens hygiene when it comes to preventing S. marcescens infections. Nevertheless, both proper hand and contact lens hygiene practices can reduce the detection of bacterial eye pathogens, especially a common intestinal bacterium.


Asunto(s)
Infecciones por Serratia , Serratia marcescens , Humanos , Serratia marcescens/aislamiento & purificación , Serratia marcescens/genética , Masculino , Femenino , Infecciones por Serratia/microbiología , Infecciones por Serratia/epidemiología , Infecciones por Serratia/diagnóstico , Procedimientos de Ortoqueratología/métodos , Lentes de Contacto/microbiología , Lentes de Contacto/efectos adversos , Niño , Adolescente , Higiene , Higiene de las Manos , Adulto , Mano/microbiología
4.
mBio ; 15(5): e0305423, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38564701

RESUMEN

Serratia marcescens is an opportunistic pathogen historically associated with sudden outbreaks in intensive care units (ICUs) and the spread of carbapenem-resistant genes. However, the ecology of S. marcescens populations in the hospital ecosystem remains largely unknown. We combined epidemiological information of 1,432 Serratia spp. isolates collected from sinks of a large ICU that underwent demographic and operational changes (2019-2021) and 99 non-redundant outbreak/non-outbreak isolates from the same hospital (2003-2019) with 165 genomic data. These genomes were grouped into clades (1-4) and subclades (A and B) associated with distinct species: Serratia nematodiphila (1A), S. marcescens (1B), Serratia bockelmannii (2A), Serratia ureilytica (2B), S. marcescens/Serratia nevei (3), and S. nevei (4A and 4B). They may be classified into an S. marcescens complex (SMC) due to the similarity between/within subclades (average nucleotide identity >95%-98%), with clades 3 and 4 predominating in our study and publicly available databases. Chromosomal AmpC ß-lactamase with unusual basal-like expression and prodigiosin-lacking species contrasted classical features of Serratia. We found persistent and coexisting clones in sinks of subclades 4A (ST92 and ST490) and 4B (ST424), clonally related to outbreak isolates carrying blaVIM-1 or blaOXA-48 on prevalent IncL/pB77-CPsm plasmids from our hospital since 2017. The distribution of SMC populations in ICU sinks and patients reflects how Serratia species acquire, maintain, and enable plasmid evolution in both "source" (permanent, sinks) and "sink" (transient, patients) hospital patches. The results contribute to understanding how water sinks serve as reservoirs of Enterobacterales clones and plasmids that enable the persistence of carbapenemase genes in healthcare settings, potentially leading to outbreaks and/or hospital-acquired infections.IMPORTANCEThe "hospital environment," including sinks and surfaces, is increasingly recognized as a reservoir for bacterial species, clones, and plasmids of high epidemiological concern. Available studies on Serratia epidemiology have focused mainly on outbreaks of multidrug-resistant species, overlooking local longitudinal analyses necessary for understanding the dynamics of opportunistic pathogens and antibiotic-resistant genes within the hospital setting. This long-term genomic comparative analysis of Serratia isolated from the ICU environment with isolates causing nosocomial infections and/or outbreaks within the same hospital revealed the coexistence and persistence of Serratia populations in water reservoirs. Moreover, predominant sink strains may acquire highly conserved and widely distributed plasmids carrying carbapenemase genes, such as the prevalent IncL-pB77-CPsm (pOXA48), persisting in ICU sinks for years. The work highlights the relevance of ICU environmental reservoirs in the endemicity of certain opportunistic pathogens and resistance mechanisms mainly confined to hospitals.


Asunto(s)
Infección Hospitalaria , Unidades de Cuidados Intensivos , Infecciones por Serratia , Serratia marcescens , Serratia marcescens/genética , Serratia marcescens/aislamiento & purificación , Serratia marcescens/clasificación , Infecciones por Serratia/epidemiología , Infecciones por Serratia/microbiología , Humanos , Infección Hospitalaria/microbiología , Infección Hospitalaria/epidemiología , Brotes de Enfermedades , Genoma Bacteriano , Hospitales , Filogenia , Antibacterianos/farmacología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , beta-Lactamasas/genética , Pruebas de Sensibilidad Microbiana
5.
J Appl Microbiol ; 135(5)2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38609348

RESUMEN

AIM: Evaluate the efficacy of sponge wipe sampling at recovering potential bacterial surrogates for Category A and B non-spore-forming bacterial bioterrorism agents from hard, nonporous surfaces. METHODS: A literature survey identified seven nonpathogenic bacteria as potential surrogates for selected Category A and B non-spore-forming bacterial agents. Small (2 × 4 cm) and large (35.6 × 35.6 cm) coupons made from either stainless steel, plastic, or glass, were inoculated and utilized to assess persistence and surface sampling efficiency, respectively. Three commercially available premoistened sponge wipes (3M™, Sani-Stick®, and Solar-Cult®) were evaluated. RESULTS: Mean recoveries from persistence testing indicated that three microorganisms (Yersinia ruckeri, Escherichia coli, and Serratia marcescens) demonstrated sufficient persistence across all tested material types. Sampling of large inoculated (≥107 CFU per sample) coupons resulted in mean recoveries ranging from 6.6 to 3.4 Log10 CFU per sample. Mean recoveries for the Solar-Cult®, 3M™ sponge wipes, and Sani-Sticks® across all test organisms and all material types were ≥5.7, ≥3.7, and ≥3.4 Log10 CFU per sample, respectively. Mean recoveries for glass, stainless steel, and ABS plastic across all test organisms and all sponge types were ≥3.8, ≥3.7, and ≥3.4 Log10 CFU per sample, respectively. CONCLUSIONS: Recovery results suggest that sponge wipe sampling can effectively be used to recover non-spore-forming bacterial cells from hard, nonporous surfaces such as stainless steel, ABS plastic, and glass.


Asunto(s)
Bioterrorismo , Acero Inoxidable , Bacterias/aislamiento & purificación , Plásticos , Escherichia coli/aislamiento & purificación , Serratia marcescens/aislamiento & purificación , Vidrio , Recuento de Colonia Microbiana , Armas Biológicas
6.
Int J Antimicrob Agents ; 63(5): 107149, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38508537

RESUMEN

OBJECTIVES: blaKPC-carrying Enterobacterales have post great challenges to global healthcare systems. In this study, we reported the evolution and spread of blaKPC between Serratia marcescens and Klebsiella pneumoniae. METHODS: Four S. marcescens and one K. pneumoniae strains were isolated from the sputum samples of the patient. Antimicrobial susceptibility tests and whole genome sequencing were performed to investigate the phenotype & genotype of strains. Conjugation assays, cloning experiment and kinetic parameters measuring were performed to explore the spread and antimicrobial resistance mechanisms. RESULTS: The evolution and transmission of blaKPC-2 occurred during the treatment of ceftazidime-avibactam and trimethoprim-sulfamethoxazole. Analysis of the antimicrobial susceptibility and genetic profiles of the clinical strains showed that blaKPC-2 evolved into blaKPC-71 and blaKPC-44, together with resistance to ceftazidime-avibactam and carbapenems susceptibility recovery under antimicrobial pressure. Cloning and expression of blaKPC-44 & blaKPC-71 in E. coli DH5α showed that KPC-44 and KPC-71 resulted in a 64∼128-fold increase in the MIC value for ceftazidime-avibactam. Meanwhile, the kinetic assays also showed that the enzyme activity of KPC-44 and KPC-71 towards carbapenems was destroyed and couldn't be inhibited by avibactam. Based on the conjugation assay and whole genome sequence analyses, we provided evolutionary insights into the transmission pathway trace of blaKPC-bearing plasmids between S. marcescens and K. pneumoniae. CONCLUSIONS: Mixed-species co-infection is one of the risk factors leading to the spread of plasmids carrying carbapenem-resistant genes, and increased surveillance of multidrug-resistant Enterobacterales is urgently needed.


Asunto(s)
Antibacterianos , Infecciones por Klebsiella , Klebsiella pneumoniae , Pruebas de Sensibilidad Microbiana , Plásmidos , Infecciones por Serratia , Serratia marcescens , Secuenciación Completa del Genoma , beta-Lactamasas , Serratia marcescens/genética , Serratia marcescens/efectos de los fármacos , Serratia marcescens/aislamiento & purificación , Serratia marcescens/enzimología , Klebsiella pneumoniae/genética , Klebsiella pneumoniae/efectos de los fármacos , Humanos , Plásmidos/genética , beta-Lactamasas/genética , Infecciones por Serratia/microbiología , Infecciones por Serratia/epidemiología , Antibacterianos/farmacología , Infecciones por Klebsiella/microbiología , Infecciones por Klebsiella/epidemiología , Ceftazidima/farmacología , Combinación de Medicamentos , Farmacorresistencia Bacteriana Múltiple/genética , Compuestos de Azabiciclo/farmacología , Esputo/microbiología , Evolución Molecular , Transferencia de Gen Horizontal , Carbapenémicos/farmacología
7.
Gene ; 822: 146355, 2022 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-35189248

RESUMEN

BACKGROUND: Carbapenem-resistant Enterobacteriaceae (CRE) have been thoroughly studied as the pathogens associated with hospital acquired infections. However, data on Serratia marcescens are not enough. S. marcescens is now becoming a propensity for its highly antimicrobial-resistant clinical infections. METHODS: Four carbapenem-resistant S. marcescens (CR-SM) isolates were obtained from hospitalized patients through routine microbiological experiments. We assembled the isolates genomes using whole genome sequencing (WGS) and compared their resistome and virulome patterns. RESULTS: The average length and CG content of chromosomes was 5.33 Mbp and 59.8%, respectively. The number of coding sequences (CDSs) ranged from 4,959 to 4,989. All strains had one single putative conjugative plasmid with IncL incompatibility (Inc) group. The strains harbored blaCTX-M-15, blaTEM-1 and blaSHV-134. All plamsids were positive for blaOXA-48. No blaNDM-1, blaKPC, blaVIM and blaIMP were identified. The blaSRT-2 and aac(6')-Ic genes were chromosomally-encoded. Class 1 integron was detected in strains P8, P11 and P14. The Escher_RCS47 and Salmon_SJ46 prophages played major role in plasmid-mediated carraige of extended spectrum ß-lactamases (ESBLs). The CR-SM strains were equipt with typical virulence factors of oppotunistic pathogens including biofilm formation, adhesins, secretory systems and siderophores. The strains did not have ability to produce prodigiosin but were positive for chitinase and EstA. CONCLUSION: The presence of conjugative plasmids harboring major ß-lactamases within prophage and class 1 integron structures highlights the role of different mobile genetic elements (MGEs) in distribution of AMR factors and more specifically carbapenemases. More molecular studies are required to determine the status of carbapenem resistance in clinical starins. However, appropriate strategies to control the global dissemination of CR-SM are urgent.


Asunto(s)
Carbapenémicos/farmacología , Farmacorresistencia Bacteriana Múltiple , Profagos/genética , Serratia marcescens/clasificación , Secuenciación Completa del Genoma/métodos , Adulto , Composición de Base , Sangre/microbiología , Líquido del Lavado Bronquioalveolar/microbiología , Tamaño del Genoma , Genoma Bacteriano , Secuenciación de Nucleótidos de Alto Rendimiento , Hospitalización , Humanos , Masculino , Filogenia , Plásmidos/genética , Serratia marcescens/genética , Serratia marcescens/aislamiento & purificación , Serratia marcescens/virología , Factores de Virulencia/genética , Adulto Joven , beta-Lactamasas/genética
8.
World J Microbiol Biotechnol ; 37(12): 198, 2021 Oct 19.
Artículo en Inglés | MEDLINE | ID: mdl-34664131

RESUMEN

Drought is the prime abiotic stress that rigorously influences plant growth, yield and quality of crops. The current investigation illustrated the bio-protective characters of Serratia marcescens and Pseudomonas sp. to ameliorate drought stress tolerance, plant growth and nutrient status of wheat. The present study aimed for search of potential drought tolerant plant growth-promoting rhizobacteria (PGPR). All screened bacterial isolates exhibited potential plant growth promoting (PGP) attributes such as production of ACC deaminase, exo-polysaccharide, siderophore, ammonia, IAA, and efficiently solubilized zinc and phosphate under in vitro conditions. To assess the in situ plant growth promotion potential of PGPR, a greenhouse experiment was conducted by priming wheat seeds with screened plant PGPR. Improved water status, reactive oxygen species, osmolyte accumulation, chlorophyll and carotenoids content in plant leaves confirmed the excellent drought tolerance conferring ability of RRN II 2 and RRC I 5. Among all PGPR, RRN II 2 and RRC I 5 inoculated plants not only demonstrated greater harvest index but also exhibited more micronutrient (zinc and iron) content in wheat grains. Further, RRN II 2 and RRC I 5 were identified through 16S rDNA sequencing as S. marcescens and Pseudomonas sp., respectively. Furthermore, amplification of acdS gene (Amplified band size of acdS gene was ~ 1.8 Kb) also confirmed ACC deaminase enzyme producing ability of Pseudomonas sp. Moreover, correlation coefficient, principal component analysis and cluster analysis also demonstrated that nutrient status and values of agronomical parameters of wheat primed with S. marcescens and Pseudomonas sp. were at par with the positive control. Thus, the outcome of this comparative investigation indicates that Pseudomonas sp. and S. marcescens could be utilized as bioinoculant in wheat since they can improve the physiological status, productivity and nutrient status in wheat crop under drought.


Asunto(s)
Aclimatación , Liasas de Carbono-Carbono/metabolismo , Sequías , Nutrientes , Desarrollo de la Planta , Pseudomonas/metabolismo , Serratia marcescens/metabolismo , Triticum/crecimiento & desarrollo , Antibiosis , Clorofila , Raíces de Plantas/microbiología , Pseudomonas/genética , Pseudomonas/aislamiento & purificación , Semillas , Serratia marcescens/genética , Serratia marcescens/aislamiento & purificación , Microbiología del Suelo , Estrés Fisiológico , Triticum/microbiología , Agua
9.
Eur J Clin Microbiol Infect Dis ; 40(12): 2593-2596, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34363530

RESUMEN

A comparative analysis of the performance of the new selective chromogenic CHROMagar™-Serratia culture medium for detection and isolation of Serratia marcescens was undertaken. A total of 134 clinical isolates (95 S. marcescens with and without carbapenemase production and 39 non-S. marcescens isolates) and 96 epidemiological samples (46 rectal swabs and 50 from environmental surfaces) were studied. Diagnostic values when compared with CHROMagar™-Orientation medium were 96.8% sensitivity, 100% specificity, 100% positive predictive value and 88.5% negative predictive value. In conclusion, CHROMagar™-Serratia shows an excellent ability for differentiation of S. marcescens among clinical isolates and in environmental samples.


Asunto(s)
Técnicas Bacteriológicas/métodos , Medios de Cultivo/química , Infecciones por Serratia/microbiología , Serratia marcescens/crecimiento & desarrollo , Serratia marcescens/aislamiento & purificación , Agar/química , Agar/metabolismo , Técnicas Bacteriológicas/instrumentación , Compuestos Cromogénicos/química , Compuestos Cromogénicos/metabolismo , Medios de Cultivo/metabolismo , Humanos , Infecciones por Serratia/diagnóstico , Serratia marcescens/metabolismo
10.
Ann Clin Microbiol Antimicrob ; 20(1): 57, 2021 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-34461917

RESUMEN

Carbapenem-resistant Enterobacteriaceae are a worldwide health problem and isolates carrying both blaKPC-2 and blaNDM-1 are unusual. Here we describe the microbiological and clinical characteristics of five cases of bloodstream infections (BSI) caused by carbapenem-resistant Klebsiella pneumoniae and Serratia marcescens having both blaKPC-2 and blaNDM-1. Of the five blood samples, three are from hematopoietic stem cell transplantation patients, one from a renal transplant patient, and one from a surgical patient. All patients lived in low-income neighbourhoods and had no travel history. Despite antibiotic treatment, four out of five patients died. The phenotypic susceptibility assays showed that meropenem with the addition of either EDTA, phenylboronic acid (PBA), or both, increased the zone of inhibition in comparison to meropenem alone. Molecular tests showed the presence of blaKPC-2 and blaNDM-1 genes. K. pneumoniae isolates were assigned to ST258 or ST340 by whole genome sequencing. This case-series showed a high mortality among patients with BSI caused by Enterobacteriae harbouring both carbapenemases. The detection of carbapenemase-producing isolates carrying both blaKPC-2 and blaNDM-1 remains a challenge when using only phenotypic assays. Microbiology laboratories must be alert for K. pneumoniae isolates producing both KPC-2 and NDM-1.


Asunto(s)
Bacteriemia/diagnóstico , Klebsiella pneumoniae/aislamiento & purificación , Serratia marcescens/aislamiento & purificación , Antibacterianos/farmacología , Farmacorresistencia Bacteriana/genética , Humanos , Klebsiella pneumoniae/efectos de los fármacos , Klebsiella pneumoniae/genética , Sepsis , Serratia marcescens/genética , beta-Lactamasas/genética , beta-Lactamasas/metabolismo
11.
FEMS Microbiol Lett ; 368(14)2021 07 20.
Artículo en Inglés | MEDLINE | ID: mdl-34264334

RESUMEN

Serratia marcescens SCH909 is a multidrug resistant strain isolated in 1988 harboring three class 1 integrons. We wondered if these integrons were retained over time and if there were other antimicrobial resistant determinants contributing to its multidrug resistant profile. Genomic analysis showed a fourth multidrug resistance integron, a Tn7 transposon with dfrA1-sat2-ybeA-ybfA-ybfB-ybgA gene cassettes in the variable region. Insertion sequences were involved in the genesis of novel composite transposons in the L4 subtype plasmid pSCH909, such as Tn6824 carrying an arsenic regulon and two head to head class 1 integrons surrounded by two complete IS1. Remarkably, a novel chromosomal genomic island, SmaR, was identified, closely related to Multiple Antimicrobial Resistance Regions (MARR), usually found in AbaR0-type and AbGRI2-0 from global clones of Acinetobacter baumannii, and in M-type plasmids circulating in Enterobacteriaceae. Maintenance studies showed that the three class 1 integrons were maintained over 1 month without antimicrobial pressure. Since S. marcescens is considered a relevant nosocomial pathogen that can have a wide range of niches - human, plant, animal, soil and inanimate surfaces, our findings support the ability of this species to capture, maintain and spread a broad variety of antimicrobial resistance elements.


Asunto(s)
Farmacorresistencia Bacteriana Múltiple/genética , Serratia marcescens/efectos de los fármacos , Serratia marcescens/genética , Acinetobacter baumannii/genética , Animales , Antibacterianos/farmacología , Farmacorresistencia Bacteriana Múltiple/efectos de los fármacos , Enterobacteriaceae/genética , Genes Bacterianos , Genoma Bacteriano/genética , Islas Genómicas/genética , Humanos , Integrones/genética , Plásmidos/genética , Serratia marcescens/aislamiento & purificación
12.
Arch Microbiol ; 203(5): 2269-2277, 2021 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-33638021

RESUMEN

Rhizopus species are opportunistic pathogens and cause infections which lead to deaths in individuals with the weakened immune system. Some strains of Rhizopus species have been detected to have a symbiotic relationship with bacteria. The toxicity of the Rhizopus species is important. Because strains harbouring endofungal bacteria are able to produce secondary metabolites and if endofungal bacteria are released from mycelium, serious problems can occur. We aimed to investigate the presence of endofungal bacteria in Rhizopus species isolated from food samples. Rhizopus species were isolated from different food samples. The presence of endofungal bacteria in the Rhizopus isolates was investigated. Rhizopus strains containing the endofungal bacteria were identified through phenotypic and genotypic methods. Universal primers amplifying bacterial 16S rRNA region were used to amplify 1.2-1.5-kb fragment from fungal metagenomic DNA. Sequence analysis of PCR products amplified from fungal metagenomic DNA was made. Fluorescence microscopy and scanning electron microscopy were used to visualize the presence of endofungal bacteria in fungal hyphae. According to our results, the Rhizopus strains is associated with Serratia marcescens, Pseudomonas fluorescens and Klebsiella pneumoniae. Until now there is no evidence that Pseudomonas fluorescens and Klebsiella pneumoniae were identified as endofungal. These species are opportunistic pathogen dangerous for humans. It is important for humans not only the presence of the fungi but also the presence of the endofungal bacteria in foods. Our work is important because it draws attention to the presence of endofungal bacteria in foods. Because there is danger releasing of a bacterium from the mycelium, it is likely to face sepsis or serious problems.


Asunto(s)
Hifa/fisiología , Klebsiella pneumoniae/aislamiento & purificación , Pseudomonas fluorescens/aislamiento & purificación , Rhizopus/metabolismo , Serratia marcescens/aislamiento & purificación , ADN de Hongos/genética , Microbiología de Alimentos , Humanos , Klebsiella pneumoniae/crecimiento & desarrollo , Micelio/química , Pseudomonas fluorescens/crecimiento & desarrollo , ARN Ribosómico 16S/genética , Rhizopus/genética , Serratia marcescens/crecimiento & desarrollo , Simbiosis
13.
Microb Genom ; 7(3)2021 03.
Artículo en Inglés | MEDLINE | ID: mdl-33599607

RESUMEN

Background. Infections caused by carbapenem-resistant Acinetobacter baumannii (CR-Ab) have become increasingly prevalent in clinical settings and often result in significant morbidity and mortality due to their multidrug resistance (MDR). Here we present an integrated whole-genome sequencing (WGS) response to a persistent CR-Ab outbreak in a Brisbane hospital between 2016-2018.Methods. A. baumannii, Klebsiella pneumoniae, Serratia marcescens and Pseudomonas aeruginosa isolates were sequenced using the Illumina platform primarily to establish isolate relationships based on core-genome SNPs, MLST and antimicrobial resistance gene profiles. Representative isolates were selected for PacBio sequencing. Environmental metagenomic sequencing with Illumina was used to detect persistence of the outbreak strain in the hospital.Results. In response to a suspected polymicrobial outbreak between May to August of 2016, 28 CR-Ab (and 21 other MDR Gram-negative bacilli) were collected from Intensive Care Unit and Burns Unit patients and sent for WGS with a 7 day turn-around time in clinical reporting. All CR-Ab were sequence type (ST)1050 (Pasteur ST2) and within 10 SNPs apart, indicative of an ongoing outbreak, and distinct from historical CR-Ab isolates from the same hospital. Possible transmission routes between patients were identified on the basis of CR-Ab and K. pneumoniae SNP profiles. Continued WGS surveillance between 2016 to 2018 enabled suspected outbreak cases to be refuted, but a resurgence of the outbreak CR-Ab mid-2018 in the Burns Unit prompted additional screening. Environmental metagenomic sequencing identified the hospital plumbing as a potential source. Replacement of the plumbing and routine drain maintenance resulted in rapid resolution of the secondary outbreak and significant risk reduction with no discernable transmission in the Burns Unit since.Conclusion. We implemented a comprehensive WGS and metagenomics investigation that resolved a persistent CR-Ab outbreak in a critical care setting.


Asunto(s)
Acinetobacter baumannii/genética , Infección Hospitalaria/microbiología , Farmacorresistencia Bacteriana Múltiple , Infecciones por Bacterias Gramnegativas/microbiología , Klebsiella pneumoniae/genética , Pseudomonas aeruginosa/genética , Serratia marcescens/genética , Acinetobacter baumannii/clasificación , Acinetobacter baumannii/efectos de los fármacos , Acinetobacter baumannii/aislamiento & purificación , Adulto , Anciano , Antibacterianos/farmacología , Cuidados Críticos/estadística & datos numéricos , Brotes de Enfermedades , Femenino , Genoma Bacteriano , Genómica , Humanos , Klebsiella pneumoniae/clasificación , Klebsiella pneumoniae/efectos de los fármacos , Klebsiella pneumoniae/aislamiento & purificación , Masculino , Persona de Mediana Edad , Filogenia , Pseudomonas aeruginosa/clasificación , Pseudomonas aeruginosa/efectos de los fármacos , Pseudomonas aeruginosa/aislamiento & purificación , Serratia marcescens/clasificación , Serratia marcescens/efectos de los fármacos , Serratia marcescens/aislamiento & purificación , Secuenciación Completa del Genoma
14.
Heart Lung Circ ; 30(4): e59-e60, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33262023
15.
BMJ Case Rep ; 13(12)2020 Dec 17.
Artículo en Inglés | MEDLINE | ID: mdl-33334762

RESUMEN

A 44-year-old male person with tetraplegia (C-5 AIS-A (American Spinal Cord Injury Association Standard Neurological Classification of Spinal Cord Injury Impairment Scale)) developed urinary tract infection and received appropriate antibiotic. Subsequently, he started sweating and shivering when he was sitting up; these symptoms resolved while lying on his back. Autonomic dysreflexia triggered by truncal movements continued to occur for 3 months. CT of the spine showed L5-S1 discitis. MRI of the spine showed diffuse marrow oedema in L5 and S1 vertebrae and a large abscess at L5/S1 level. Blood culture yielded Serratia marcescens sensitive to meropenem. Meropenem followed by ertapenem was given for 12 weeks. After 11 months, MRI showed resolution of discitis and epidural collection. The patient was able to sit up for 9 hours without developing autonomic dysreflexia. If a person with cervical spinal cord injury develops posture-related autonomic dysreflexia (eg, in sitting position, lying on sides or while hoisted), disco-vertebral pathology should be suspected.


Asunto(s)
Antibacterianos/uso terapéutico , Disreflexia Autónoma/diagnóstico , Discitis/diagnóstico , Cuadriplejía/complicaciones , Infecciones Urinarias/complicaciones , Adulto , Disreflexia Autónoma/sangre , Disreflexia Autónoma/tratamiento farmacológico , Disreflexia Autónoma/microbiología , Discitis/sangre , Discitis/tratamiento farmacológico , Discitis/microbiología , Humanos , Imagen por Resonancia Magnética , Masculino , Postura , Serratia marcescens/aislamiento & purificación , Resultado del Tratamiento , Infecciones Urinarias/sangre , Infecciones Urinarias/tratamiento farmacológico , Infecciones Urinarias/microbiología
16.
BMJ Case Rep ; 13(9)2020 Sep 02.
Artículo en Inglés | MEDLINE | ID: mdl-32878857

RESUMEN

An 18-month-old boy presented with lytic lesion of skull and recurrent abscesses with Serratia marcescens The extensive work up revealed a gene mutation confirming the diagnosis of chronic granulomatous disease (CGD). This case scenario underscores the importance of exploring the possibility of immunodeficiency if there is a history of recurrent abscesses with atypical organism. The case also demonstrates that CGD can present as lytic lesion of skull.


Asunto(s)
Absceso/inmunología , Enfermedades Óseas Infecciosas/diagnóstico , Enfermedad Granulomatosa Crónica/diagnóstico , Infecciones por Serratia/inmunología , Serratia marcescens/aislamiento & purificación , Absceso/diagnóstico , Absceso/microbiología , Absceso/terapia , Antibacterianos/uso terapéutico , Profilaxis Antibiótica , Enfermedades Óseas Infecciosas/inmunología , Enfermedades Óseas Infecciosas/microbiología , Enfermedades Óseas Infecciosas/terapia , Craneotomía , Diagnóstico Diferencial , Hueso Frontal/diagnóstico por imagen , Hueso Frontal/inmunología , Hueso Frontal/microbiología , Hueso Frontal/cirugía , Enfermedad Granulomatosa Crónica/complicaciones , Enfermedad Granulomatosa Crónica/inmunología , Histiocitosis de Células de Langerhans/diagnóstico , Humanos , Lactante , Imagen por Resonancia Magnética , Masculino , Recurrencia , Infecciones por Serratia/diagnóstico , Infecciones por Serratia/microbiología , Infecciones por Serratia/terapia , Serratia marcescens/inmunología , Tomografía Computarizada por Rayos X
17.
J Glaucoma ; 29(10): e110-e112, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32740504

RESUMEN

PURPOSE: The purpose of this study was to report a rare case of late-onset subconjunctival abscess associated with an unexposed Ahmed glaucoma valve implant secondary to Serratia marcescens, a rare conjunctival pathogen. METHODS: Case description including clinical imaging and literature review of glaucoma drainage device (GDD)-related infections. CASE PRESENTATION: A 73-year-old man presented with blurring of vision, redness, and pain on his right eye 2 months after Ahmed glaucoma valve implantation for advanced postpenetrating-keratoplasty glaucoma. The patient was nonsmoker, had fairly controlled type 2 diabetes mellitus on insulin, and had undergone multiple eye surgeries on the right eye. On ocular examination, the conjunctiva was injected with fairly delineated yellowish-white subconjunctival material in the superotemporal quadrant with no associated tube exposure or leak, and the anterior chamber was quiet. The patient was assessed with Ahmed glaucoma valve infection with subconjunctival abscess and was treated by Ahmed glaucoma valve explant with directed systemic and topical antimicrobial therapy. The culture and sensitivity results revealed S. marcescens sensitive to ciprofloxacin, ceftazidime, gentamicin, and amikacin. Despite the virulence of the pathogen, the eye was saved. CONCLUSIONS: Ahmed glaucoma valve infection with subconjunctival abscess secondary to S. marcescens is rare. GDD-related infections should be suspected in patients presenting with blurring of vision, pain, and redness even in the absence of tube exposure. Early diagnosis and treatment with culture-guided antimicrobial therapy combined with GDD explant is fundamental in optimizing the visual outcome.


Asunto(s)
Absceso/etiología , Conjuntiva/microbiología , Infecciones Bacterianas del Ojo/etiología , Implantes de Drenaje de Glaucoma/efectos adversos , Glaucoma/cirugía , Infecciones Relacionadas con Prótesis/diagnóstico , Infecciones por Serratia/etiología , Serratia marcescens/aislamiento & purificación , Absceso/diagnóstico , Absceso/microbiología , Anciano , Infecciones Bacterianas del Ojo/diagnóstico , Infecciones Bacterianas del Ojo/microbiología , Humanos , Masculino , Infecciones Relacionadas con Prótesis/microbiología , Infecciones por Serratia/diagnóstico , Infecciones por Serratia/microbiología
19.
Steroids ; 160: 108659, 2020 08.
Artículo en Inglés | MEDLINE | ID: mdl-32439407

RESUMEN

Four novel deoxycholic acid tethered α-cyanostilbenes were designed, synthesized and characterized using detailed spectroscopic analysis. The synthesized deoxycholic acid tethered α-cyanostilbene derivatives formed stable gels with a variety of solvents, such as xylene, toluene, mesitylene, decane, dodecane etc. The stable gels showed lamellar sheet type structures stacked over each other, consisting of entangled fibres as evident from SEM, TEM and Fluorescence Microscopy images; The synthesized compounds exhibited AIEE behaviour in H2O/THF mixture, with the maximum emission observed in 70% H2O/THF fraction along with a bathochromic shift. A solvent thickening experiment was perform to establish the mechanism of AIEE and the AIEE property was explored for bacterial bio-imaging. The synthesized derivatized steroids proved their potential as multifunctional organic materials.


Asunto(s)
Acrilonitrilo/análogos & derivados , Ácido Desoxicólico/química , Colorantes Fluorescentes/química , Imagen Molecular , Serratia marcescens/aislamiento & purificación , Staphylococcus aureus/aislamiento & purificación , Acrilonitrilo/química , Colorantes Fluorescentes/síntesis química , Geles/síntesis química , Geles/química , Microscopía Fluorescente , Conformación Molecular , Peso Molecular
20.
Antimicrob Resist Infect Control ; 9(1): 64, 2020 05 12.
Artículo en Inglés | MEDLINE | ID: mdl-32398063

RESUMEN

BACKGROUND: Surgical site infection (SSI) is the most common healthcare-associated infection. We report an outbreak of neurosurgical site infections caused by Serratia marcescens after craniotomy in a tertiary care hospital. METHODS: Between August 6 and 21, 2018, five cases of early-onset SSI caused by S. marcescens after craniotomy were recorded in a 1786-bed tertiary care hospital. Cultures were collected from potential environmental sources and healthcare workers. Whole-genome sequencing (WGS) was used to investigate the genetic relationships among S. marcescens isolates. RESULTS: The outbreak involved five patients; S. marcescens was isolated from the cerebrospinal fluid, pus, tissue, and blood samples from these patients. S. marcescens was also isolated from shaving razors and brushes. All S. marcescens isolates from the infected patients and razors showed the same resistance patterns on antibiotic-susceptibility tests. WGS revealed close clustering among four of five isolates from the patients and among three of four isolates from the razors. No additional patient developed S. marcescens infection after we stopped using the razors for scalp shaving. CONCLUSIONS: We report an outbreak of neurosurgical site infections after craniotomy, which was associated with shaving razors contaminated by S. marcescens. Shaving scalps with razors should be avoided to prevent SSI.


Asunto(s)
Craneotomía/efectos adversos , Infección Hospitalaria/microbiología , Brotes de Enfermedades/clasificación , Infecciones por Serratia/epidemiología , Serratia marcescens/clasificación , Infección de la Herida Quirúrgica/microbiología , Secuenciación Completa del Genoma/métodos , Adolescente , Adulto , Anciano , Niño , Infección Hospitalaria/epidemiología , Contaminación de Equipos , Femenino , Genoma Bacteriano , Mano/microbiología , Personal de Salud , Humanos , Masculino , Pruebas de Sensibilidad Microbiana , Persona de Mediana Edad , Filogenia , Seúl/epidemiología , Infecciones por Serratia/microbiología , Serratia marcescens/genética , Serratia marcescens/aislamiento & purificación , Infección de la Herida Quirúrgica/epidemiología , Centros de Atención Terciaria
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