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1.
Asian Pac J Cancer Prev ; 22(11): 3717-3722, 2021 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-34837932

RESUMEN

PURPOSE: CDK1A is one of the most important genes that have different key roles in cell lines. This gene has several transcript variants. Investigating of expression of each one actually can be so important because any one of them may have a separate unknown role in cancer cells so can be used to increase therapeutic efficacy. METHODS: A549, MDA-MB-231 and Hek-AD cell lines were used in this study. Firstly, three primers for variants of p21 gene were designed by Snapgene and BLAST software. Secondly, the variants expression was checked for each cell lines by RT-qPCR technique, separately. Then the variants that expressed in the cells were selected for more investigation. Finally 2 Gy irradiation was used to evaluate the effect of that on variants expression. RESULTS: The results show that for all cell lines, primer num1 and 3 expressed before any stimuli. After irradiation, for MDA-MB-231 and A549, the expression of primer num3 was decreased, while for Hek-AD no change was observed. The primer num1 expression after the irradiation was different for the cells, V1 expression was decreased in A549 by fold of 0.03 while expression of this for MDA-MB-231 cells was not changed after 2Gy irradiation. CONCLUSION: It is very necessary to pay attention to the function of each splice variant as well as the response to external stimuli. Understanding the role of each variant in a gene is critical and researchers can use that to improve radiotherapy as well.


Asunto(s)
Inhibidor p21 de las Quinasas Dependientes de la Ciclina/efectos de la radiación , Regulación Neoplásica de la Expresión Génica/efectos de la radiación , Variación Genética/efectos de la radiación , Traumatismos por Radiación/genética , Radiación Ionizante , Línea Celular Tumoral , Cartilla de ADN/efectos de la radiación , Humanos
2.
Int J Radiat Biol ; 97(7): 1020-1031, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33900888

RESUMEN

PURPOSE: Genetic variability in white button mushroom cultivars is very low due to the life cycle. Induction mutations using gamma irradiation is a useful way to generate diversity in white button mushrooms to obtain genotype(s) with desirable traits. METHODS: Gamma irradiation Cobalt-60 was used for inducting genetic diversity in white button mushroom to obtain genotype(s) with desirable traits. Gamma irradiation with doses of 0-500 Gy was conducted on spores on Potato Dextrose Agar medium. RESULTS: The results showed significant differences in days to pin production and harvest, fruit body number, fresh and dry weight, yield, laccase, and manganese peroxidase enzyme activity. After isolating variants, 15 variants were selected on the base of their high yield and enzyme degradation activity. Their genetic variation was confirmed by Sequence Related Amplified Polymorphism (SRAP) markers, and then incubated on three types of substrates (50:50, 75:25, and 100:0 % compost: raw straw). The results showed that all variants, except GR18, colonized in 75:25, and GR3, GR4, GR9, GR61, GR72, and GR74 variants colonized in 50:50. In 100:0 substrate, GR55 and GR63 were the earliest variants, and GR9 produced the highest fruit body number. In 75:25 substrate, GR9, GR3, GR61, GR4, GR74, GR4, GR61, and GR72 showed higher yields. The highest laccase and manganese peroxidase activity were recorded in GR3, GR4, GR9, GR72, and GR61. The isolated 15 variants were clustered into two main groups by cluster analysis and genetic variation was confirmed by SRAP markers. CONCLUSION: The results showed that the diversity in the white button mushroom could be improved using gamma rays, and the variation would be useful for the development of future breeding programs.


Asunto(s)
Agaricus/crecimiento & desarrollo , Agaricus/genética , Rayos gamma , Variación Genética/efectos de la radiación , Mutación/efectos de la radiación , Agaricus/enzimología
3.
Genes (Basel) ; 12(2)2021 02 04.
Artículo en Inglés | MEDLINE | ID: mdl-33557416

RESUMEN

The phenotypic plasticity of plants in response to change in their light environment, and in particularly, to shade is a schoolbook example of ecologically relevant phenotypic plasticity with evolutionary adaptive implications. Epigenetic variation is known to potentially underlie plant phenotypic plasticity. Yet, little is known about its role in ecologically and evolutionary relevant mechanisms shaping the diversity of plant populations in nature. Here we used a reference-free reduced representation bisulfite sequencing method for non-model organisms (epiGBS) to investigate changes in DNA methylation patterns across the genome in snapdragon plants (Antirrhinum majus L.). We exposed plants to sunlight versus artificially induced shade in four highly inbred lines to exclude genetic confounding effects. Our results showed that phenotypic plasticity in response to light versus shade shaped vegetative traits. They also showed that DNA methylation patterns were modified under light versus shade, with a trend towards global effects over the genome but with large effects found on a restricted portion. We also detected the existence of a correlation between phenotypic and epigenetic variation that neither supported nor rejected its potential role in plasticity. While our findings imply epigenetic changes in response to light versus shade environments in snapdragon plants, whether these changes are directly involved in the phenotypic plastic response of plants remains to be investigated. Our approach contributed to this new finding but illustrates the limits in terms of sample size and statistical power of population epigenetic approaches in non-model organisms. Pushing this boundary will be necessary before the relationship between environmentally induced epigenetic changes and phenotypic plasticity is clarified for ecologically relevant mechanisms with evolutionary implications.


Asunto(s)
Adaptación Fisiológica/genética , Antirrhinum/genética , Metilación de ADN/genética , Epigénesis Genética/genética , Adaptación Fisiológica/efectos de la radiación , Antirrhinum/efectos de la radiación , Metilación de ADN/efectos de la radiación , Epigénesis Genética/efectos de la radiación , Variación Genética/efectos de la radiación , Fenotipo , Hojas de la Planta/genética , Hojas de la Planta/crecimiento & desarrollo , Luz Solar
4.
Health Phys ; 119(1): 109-117, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32483046

RESUMEN

Little is known about the mutational impact of ionizing radiation (IR) exposure on a genome-wide level in mammalian tissues. Recent advancements in sequencing technology have provided powerful tools to perform exome-wide analyses of genetic variation. This also opened up new avenues for studying and characterizing global genomic IR-induced effects. However, genotypes generated by next generation sequencing (NGS) studies can contain errors, which may significantly impact the power to detect signals in common and rare variant analyses. These genotyping errors are not explicitly detected by the standard Genotype Analysis ToolKit (GATK) and Variant Quality Score Recalibration (VQSR) tool and thus remain a potential source of false-positive variants in whole exome sequencing (WES) datasets. In this context, the transition-transversion ratio (Ti/Tv) is commonly used as an additional quality check. In case of IR experiments, this is problematic when Ti/Tv itself might be influenced by IR treatment. It was the aim of this study to determine a suitable threshold for variant filters for NGS datasets from irradiated cells in order to achieve high data quality using Ti/Tv, while at the same time being able to investigate radiation-specific effects on the Ti/Tv ratio for different radiation doses. By testing a variety of filter settings and comparing the obtained results with publicly available datasets, we observe that a coverage filter setting of depth (DP) 3 and genotype quality (GQ) 20 is sufficient for high quality single nucleotide variants (SNVs) calling in an analysis combining GATK and VSQR and that Ti/Tv values are a consistent and useful indicator for data quality assessment for all tested NGS platforms. Furthermore, we report a reduction in Ti/Tv in IR-induced mutations in primary human gingiva fibroblasts (HGFs), which points to an elevated proportion of transversions among IR-induced SNVs and thus might imply that mismatch repair (MMR) plays a role in the cellular damage response to IR-induced DNA lesions.


Asunto(s)
Exoma/efectos de la radiación , Fibroblastos/efectos de la radiación , Variación Genética/efectos de la radiación , Genoma Humano/efectos de la radiación , ADN/efectos de la radiación , Daño del ADN/efectos de la radiación , Interpretación Estadística de Datos , Bases de Datos Genéticas , Exoma/genética , Fibroblastos/citología , Genotipo , Encía/citología , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Dosis de Radiación , Exposición a la Radiación/efectos adversos , Radiación Ionizante , Análisis de Secuencia de ADN , Secuenciación del Exoma
5.
Artículo en Inglés | MEDLINE | ID: mdl-31255224

RESUMEN

In this paper the main results of long-term (2003-2016) observations on Scots pine populations inhabiting sites affected by the Chernobyl accident are presented. Populations growing for many years under chronic radiation exposure are characterized by the enhanced mutation rates, increased genetic diversity, changes in the gene expression and in the level of genome-wide methylation, alterations in the temporal dynamics of cytogenetic abnormalities and genetic structure of populations. However, significant changes at the genetic level had no effects on enzymatic activity, morphological abnormalities, and reproductive ability of pine trees. The results presented increase our understanding of the long-term effects of chronic radiation exposure on plant populations in the wild nature and provide important information for the management and monitoring of radioactively contaminated territories.


Asunto(s)
Contaminantes Ambientales/toxicidad , Contaminación Ambiental/efectos adversos , Pinus sylvestris/efectos de la radiación , Exposición a la Radiación/efectos adversos , Monitoreo Biológico/métodos , Accidente Nuclear de Chernóbil , Aberraciones Cromosómicas/efectos de la radiación , Expresión Génica/efectos de la radiación , Variación Genética/efectos de la radiación , Pinus sylvestris/genética
6.
Int J Radiat Biol ; 95(9): 1242-1250, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31140891

RESUMEN

Purpose: To develop elite mutants in chamomile (Chamomilla recutita [L.] Rauschert) for increasing the quantity and quality of essential oil rich in acetylenic compound (2Z,8Z)-matricaria acid methyl ester by applying γ -rays irradiation. Molecular and chemical analysis was performed for ithe dentification/differentiation of mutant genotype. Materials and methods: Chamomile (Chamomilla recutita [L.] Rauschert) variety Vallary seeds were irradiated by applying γ -rays irradiation at 100, 200, 300, 400, 500, 600, 700, 800, 900 and1000 Gy doses at a dose rate of 55 Gy/min and mutants were isolated and analyzed for the quantity and quality of essential oil. The oil was found to be rich in acetylenic compound (2Z,8Z)-matricaria acid methyl ester and the results obtained were validated using gas chromatography (GC) coupled with either Flame Ionization detection (GC-FID) or mass spectrometer (GC-MS), and nuclear magnetic resonance (NMR). Results: The selected mutant SELM-1 (Selection Mutant-1) showed the production potential of 7.00-7.50 q ha-1 dry flowers and 6.00-6.50 kg ha-1 essential oil yield. Essential oil of mutant SELM-1 contained in [(2Z,8Z)-matricaria acid methyl ester] (76-80%) useful in cosmetic, perfumery, and pharmaceutical industries. Conclusion:γ -rays irradiation method is a very efficient mutation breeding method for chamomile crop. GC-FID or GC-MS and NMR methods are found to be the most powerful methods for screening of essential oil chemical compounds isolated from the mutants. The novel mutant (SELM-1) is very promising in terms of high flower and essential oil yield rich in acetylenic compound (2Z,8Z)-matricaria acid methyl ester (76-80%), hence, it was released as variety in Council of Scientific & Industrial Research (CSIR)-Central Institute of Medicinal and Aromatic Plant (CIMAP), Lucknow U.P. (India) named as CIM-Ujjwala for commercial cultivation.


Asunto(s)
Manzanilla/genética , Manzanilla/efectos de la radiación , Rayos gamma/efectos adversos , Variación Genética/efectos de la radiación , Genotipo , Manzanilla/metabolismo , Flores/metabolismo , Flores/efectos de la radiación , Aceites Volátiles/metabolismo
7.
Pak J Biol Sci ; 22(12): 607-613, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31930860

RESUMEN

BACKGROUND AND OBJECTIVE: Wheat (Triticum aestivum L.) offers some unique opportunities for the induction and exploitation of agronomic value. The use of gamma radiation has been proven to be an effective method to induce genetic variation in crops. We aimed to determine genetically stable mutants of wheat which could be utilized for breeding purposes. MATERIALS AND METHODS: We did a cytological investigation of induced mutant's behavior and chiasma frequency. Selected mutant types induced in dry and soaked seeds were treated with different doses of gamma rays. Each treated sample and control were subjected to cytological examination of the fixed pollen mother cells in various meiotic stages. RESULTS: The percentage of the total abnormal cells significantly increased in one mutant and significantly decreased in the other mutant. The percentage of total abnormal cells did not diminish from the first to the second meiotic division. The types of meiotic anomalies found included laggards (56.51%), univalent (9.43%), stickiness (45.45%) and bridges (19.32%). There were genotypic differences in the frequency of occurrence of multivalent (trivalent and quadrivalents). A marked reduction in the number of rod and ring bivalent/cell in some genotypes were noticed. The frequency of chiasmata per pollen mother cell was reduced subsequently. Depression index of mutants was negative compared with controls or treatments except for a few genotypes. CONCLUSION: Selected mutants of wheat tend to be cytologically stable and can therefore, be utilized for breeding purposes.


Asunto(s)
Triticum/genética , Triticum/efectos de la radiación , Cromosomas de las Plantas/genética , Cromosomas de las Plantas/efectos de la radiación , Rayos gamma , Variación Genética/efectos de la radiación , Genotipo , Meiosis/genética , Meiosis/efectos de la radiación , Mutación/efectos de la radiación , Fitomejoramiento/métodos , Arabia Saudita , Semillas/genética , Semillas/efectos de la radiación
8.
Environ Pollut ; 232: 105-112, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-28931465

RESUMEN

Genetic and epigenetic changes were investigated in chronically irradiated Scots pine (Pinus sylvestris L.) populations from territories that were heavily contaminated by radionuclides as result of the Chernobyl Nuclear Power Plant accident. In comparison to the reference site, the genetic diversity revealed by electrophoretic mobility of AFLPs was found to be significantly higher at the radioactively contaminated areas. In addition, the genome of pine trees was significantly hypermethylated at 4 of the 7 affected sites.


Asunto(s)
Accidente Nuclear de Chernóbil , Variación Genética/efectos de la radiación , Pinus sylvestris/efectos de la radiación , Exposición a la Radiación/análisis , Monitoreo de Radiación , Metilación de ADN , Pinus
9.
ISME J ; 11(9): 1975-1987, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28509910

RESUMEN

Ecoevolutionary dynamics of the gut microbiota at the macroscale level, that is, in across-species comparisons, are largely driven by ecological variables and host genotype. The repeated explosive radiations of African cichlid fishes in distinct lakes, following a dietary diversification in a context of reduced genetic diversity, provide a natural setup to explore convergence, divergence and repeatability in patterns of microbiota dynamics as a function of the host diet, phylogeny and environment. Here we characterized by 16S rRNA amplicon sequencing the gut microbiota of 29 cichlid species from two distinct lakes/radiations (Tanganyika and Barombi Mbo) and across a broad dietary and phylogenetic range. Within each lake, a significant deviation between a carnivorous and herbivorous lifestyle was found. Herbivore species were characterized by an increased bacterial taxonomic and functional diversity and converged in key compositional and functional community aspects. Despite a significant lake effect on the microbiota structure, this process has occurred with remarkable parallels in the two lakes. A metabolic signature most likely explains this trend, as indicated by a significant enrichment in herbivores/omnivores of bacterial taxa and functions associated with fiber degradation and detoxification of plant chemical compounds. Overall, compositional and functional aspects of the gut microbiota individually and altogether validate and predict main cichlid dietary habits, suggesting a fundamental role of gut bacteria in cichlid niche expansion and adaptation.


Asunto(s)
Bacterias/aislamiento & purificación , Cíclidos/microbiología , Microbioma Gastrointestinal , Adaptación Fisiológica , Animales , Bacterias/clasificación , Bacterias/genética , Fenómenos Fisiológicos Bacterianos/efectos de la radiación , Cíclidos/fisiología , Ecología , Conducta Alimentaria/efectos de la radiación , Microbioma Gastrointestinal/efectos de la radiación , Variación Genética/efectos de la radiación , Lagos/microbiología , Filogenia , Luz Solar
10.
PLoS Biol ; 15(4): e2001627, 2017 04.
Artículo en Inglés | MEDLINE | ID: mdl-28399148

RESUMEN

Repeated adaptation to a new environment often leads to convergent phenotypic changes whose underlying genetic mechanisms are rarely known. Here, we study adaptation of color vision in threespine stickleback during the repeated postglacial colonization of clearwater and blackwater lakes in the Haida Gwaii archipelago. We use whole genomes from 16 clearwater and 12 blackwater populations, and a selection experiment, in which stickleback were transplanted from a blackwater lake into an uninhabited clearwater pond and resampled after 19 y to test for selection on cone opsin genes. Patterns of haplotype homozygosity, genetic diversity, site frequency spectra, and allele-frequency change support a selective sweep centered on the adjacent blue- and red-light sensitive opsins SWS2 and LWS. The haplotype under selection carries seven amino acid changes in SWS2, including two changes known to cause a red-shift in light absorption, and is favored in blackwater lakes but disfavored in the clearwater habitat of the transplant population. Remarkably, the same red-shifting amino acid changes occurred after the duplication of SWS2 198 million years ago, in the ancestor of most spiny-rayed fish. Two distantly related fish species, bluefin killifish and black bream, express these old paralogs divergently in black- and clearwater habitats, while sticklebacks lost one paralog. Our study thus shows that convergent adaptation to the same environment can involve the same genetic changes on very different evolutionary time scales by reevolving lost mutations and reusing them repeatedly from standing genetic variation.


Asunto(s)
Adaptación Ocular/efectos de la radiación , Opsinas de los Conos/genética , Evolución Molecular , Proteínas de Peces/genética , Variación Genética/efectos de la radiación , Smegmamorpha/fisiología , Luz Solar , Alelos , Sustitución de Aminoácidos , Animales , Colombia Británica , Visión de Colores/efectos de la radiación , Opsinas de los Conos/metabolismo , Proteínas de Peces/metabolismo , Duplicación de Gen , Frecuencia de los Genes , Interacción Gen-Ambiente , Genómica/métodos , Islas , Lagos , Océano Pacífico , Filogenia , Smegmamorpha/genética , Smegmamorpha/crecimiento & desarrollo , Especificidad de la Especie
11.
Exp Oncol ; 38(4): 272-275, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28230829

RESUMEN

AIM: To study the genetic effects in children exposed to radiation in utero as a result of the Chornobyl nuclear power plant accident accounting the total radiation doses and equivalent radiation doses to the red bone marrow. MATERIALS AND METHODS: Incidence of minor developmental anomalies was studied in children exposed to radiation in utero (study group) and in the control group (1144 subjects surveyed in total). Cytogenetic tests using the method of differential G-banding of chromosomes were conducted in 60 children of both study and control groups (10-12-year-olds) and repeatedly in 39 adolescents (15-17-year-olds). RESULTS: A direct correlation was found between the number of minor developmental anomalies and fetal dose of radiation, and a reverse one with fetal gestational age at the time of radiation exposure. Incidence of chromosomal damage in somatic cells of 10-12-year-old children exposed prenatally was associated with radiation dose to the red bone marrow. The repeated testing has revealed that an increased level of chromosomal aberrations was preserved in a third of adolescents. CONCLUSION: The persons exposed to ionizing radiation at prenatal period should be attributed to the group of carcinogenic risk due to persisting increased levels of chromosome damage. This article is a part of a Special Issue entitled "The Chornobyl Nuclear Accident: Thirty Years After".


Asunto(s)
Accidente Nuclear de Chernóbil , Variación Genética/efectos de la radiación , Exposición Materna , Efectos Tardíos de la Exposición Prenatal , Traumatismos por Radiación/epidemiología , Traumatismos por Radiación/genética , Radiación Ionizante , Adolescente , Estudios de Casos y Controles , Niño , Aberraciones Cromosómicas/efectos de la radiación , Análisis Citogenético , Femenino , Humanos , Incidencia , Embarazo , Traumatismos por Radiación/diagnóstico , Factores de Riesgo
12.
Radiat Environ Biophys ; 54(4): 403-11, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26088617

RESUMEN

Histone modifications change upon the cellular response to ionizing radiation, and their cellular amounts could reflect the DNA damage response activity. We previously reported a sensitive and reliable method for the absolute quantification of γH2AX within cells, using liquid chromatography-tandem mass spectrometry (LC/MS/MS). The technique has broad adaptability to a variety of biological systems and can quantitate different modifications of histones. In this study, we applied it to quantitate the levels of γH2AX and K5-acetylated H2AX, and to compare the radiation responses between two cancer cell lines: HeLa and U-2 OS. The two cell lines have distinct properties in terms of their H2AX modifications. HeLa cells have relatively high γH2AX (3.1 %) against the total H2AX even in un-irradiated cells, while U-2 OS cells have an essentially undetectable level (nearly 0 %) of γH2AX. In contrast, the amounts of acetylated histones are lower in HeLa cells (9.3 %) and higher in U-2 OS cells (24.2 %) under un-irradiated conditions. Furthermore, after ionizing radiation exposure, the time-dependent increases and decreases in the amounts of histone modifications differed between the two cell lines, especially at the early time points. These results suggest that each biological system has distinct kinase/phosphatase and/or acetylase/deacetylase activities. In conclusion, for the first time, we have succeeded in simultaneously monitoring the absolute amounts of phosphorylated and acetylated cellular H2AX after ionizing radiation exposure. This multi-criteria assessment enables precise comparisons of the effects of radiation between any biological systems.


Asunto(s)
Bioensayo/métodos , Daño del ADN , Histonas/genética , Histonas/efectos de la radiación , Neoplasias Experimentales/fisiopatología , Acetilación/efectos de la radiación , Línea Celular Tumoral , Relación Dosis-Respuesta en la Radiación , Variación Genética/genética , Variación Genética/efectos de la radiación , Células HeLa , Humanos , Neoplasias Experimentales/patología , Fosforilación/efectos de la radiación , Dosis de Radiación
13.
Genet Mol Res ; 13(4): 10332-40, 2014 Dec 04.
Artículo en Inglés | MEDLINE | ID: mdl-25501245

RESUMEN

The black oat (Avena strigosa Schreb) is commonly used for forage, soil cover, and green manure. Despite its importance, little improvement has been made to this species, leading to high levels of genotypic disuniformity within commercial cultivars. The objective of this study was to evaluate the efficiency of different doses of gamma rays [(60)Co] applied to black oat seeds on the increase of genetic variability of agronomic traits. We applied doses of 0, 10, 50, 100, and 200 Gy to the genotype ALPHA 94087 through exposure to [(60)Co]. Two experiments were conducted in the winter of 2008. The first aimed to test forage trait measurements such as plant height, dry matter yield, number of surviving tillers, and seedling stand. The second test assessed seed traits, such as yield and dormancy levels. Gamma irradiation seems not to increase seed yield in black oats, but it was effective in generating variability for the other traits. Tiller number and plant height are important selection traits to increase dry matter yield. Selection in advanced generations of mutant populations can increase the probability of identifying superior genotypes.


Asunto(s)
Avena/genética , Variación Genética/efectos de la radiación , Semillas/genética , Avena/efectos de la radiación , Rayos gamma , Fenotipo , Latencia en las Plantas/efectos de la radiación , Sitios de Carácter Cuantitativo/genética , Plantones/efectos de la radiación , Semillas/efectos de la radiación
14.
Int J Radiat Biol ; 90(12): 1229-39, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24831496

RESUMEN

PURPOSE: The purpose of the investigation was to induce somaclonal variations by gamma rays (GR), ethylmethane sulphonate (EMS) and sodium azide (SA) during in vitro organogenesis of cotton. MATERIALS AND METHODS: The shoot tip explants were irradiated with 5-50 Gray (Gy) GR (Cobalt 60), 0.5-5.0 mM EMS and SA separately, and inoculated on Murashige and Skoog (MS) medium fortified with plant growth regulator (PGR) for organogenesis. The plantlets with well-developed root systems were acclimatized and transferred into the experimental field to screen the somaclonal variations during growth and development. RESULTS: The number of somaclonal variations was observed in growth of irradiated/treated shoot tips, multiplication, plantlet regeneration and growth in vitro and ex vitro. The lower doses/concentrations of mutagenic treatments showed significant enhancement in selected agronomical characters and they showed decreased trends with increasing doses/concentrations of mutagenic agents. CONCLUSIONS: The results of the present study revealed the influence of lower doses/concentrations of mutagenic treatments on in vitro and ex vitro growth of cotton plantlets and their significant improvement in agronomical characters which needs further imperative stability analysis. The present observations showed the platform to use lower doses/concentrations of mutagenic agents to induce variability for enhanced agronomical characters, resistant and tolerant cotton varieties.


Asunto(s)
Metanosulfonato de Etilo/toxicidad , Variación Genética/efectos de los fármacos , Variación Genética/efectos de la radiación , Gossypium/crecimiento & desarrollo , Gossypium/genética , Mutágenos/toxicidad , Azida Sódica/toxicidad , Gossypium/efectos de los fármacos , Gossypium/efectos de la radiación , Organogénesis/efectos de los fármacos , Organogénesis/genética , Organogénesis/efectos de la radiación , Brotes de la Planta/efectos de los fármacos , Brotes de la Planta/crecimiento & desarrollo , Brotes de la Planta/efectos de la radiación , Regeneración/efectos de los fármacos , Regeneración/efectos de la radiación
15.
Radiats Biol Radioecol ; 53(1): 25-32, 2013.
Artículo en Ruso | MEDLINE | ID: mdl-23700832

RESUMEN

Long-term post-radiation changes in the level of microsatellite DNA polymorphism in peripheral blood of the male "Mayak" employees (Ozyorsk, Russia), who had been exposed to prolonged gamma-irradiation during professional activities, were studied. DNA samples were obtained from the Radiobiology Repository of Human Tissue (Southern-Urals Biophysics Institute FMBA) and used as templates for arbitrarily primed PCR. Comparative analysis of the obtained samples of DNA fragments showed a significant increase in the number of high-molecular fragments and reduction in the number of amplified low molecular weight DNA fragments in comparison with the control. However, a direct correlation of the level of DNA polymorphism with the accumulated total dose of radiation was not found. The study of the polymorphism of microsatellite DNA repeats can be used for qualitative assessment of the levels of genetic variability.


Asunto(s)
ADN , Variación Genética/efectos de la radiación , Repeticiones de Microsatélite/genética , Exposición Profesional , ADN/sangre , ADN/genética , ADN/efectos de la radiación , Rayos gamma , Humanos , Masculino , Reacción en Cadena de la Polimerasa , Liberación de Radiactividad Peligrosa , Federación de Rusia
16.
Theor Appl Genet ; 126(8): 1977-90, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23715938

RESUMEN

Since the dawn of wheat cytogenetics, chromosome 3B has been known to harbor a gene(s) that, when removed, causes chromosome desynapsis and gametic sterility. The lack of natural genetic diversity for this gene(s) has prevented any attempt to fine map and further characterize it. Here, gamma radiation treatment was used to create artificial diversity for this locus. A total of 696 radiation hybrid lines were genotyped with a custom mini array of 140 DArT markers, selected to evenly span the whole 3B chromosome. The resulting map spanned 2,852 centi Ray with a calculated resolution of 0.384 Mb. Phenotyping for the occurrence of meiotic desynapsis was conducted by measuring the level of gametic sterility as seeds produced per spikelet and pollen viability at booting. Composite interval mapping revealed a single QTL with LOD of 16.2 and r (2) of 25.6 % between markers wmc326 and wPt-8983 on the long arm of chromosome 3B. By independent analysis, the location of the QTL was confirmed to be within the deletion bin 3BL7-0.63-1.00 and to correspond to a single gene located ~1.4 Mb away from wPt-8983. The meiotic behavior of lines lacking this gene was characterized cytogenetically to reveal striking similarities with mutants for the dy locus, located on the syntenic chromosome 3 of maize. This represents the first example to date of employing radiation hybrids for QTL analysis. The success achieved by this approach provides an ideal starting point for the final cloning of this interesting gene involved in meiosis of cereals.


Asunto(s)
Infertilidad Vegetal/genética , Infertilidad Vegetal/efectos de la radiación , Mapeo de Híbrido por Radiación , Triticum/genética , Triticum/efectos de la radiación , Cromosomas de las Plantas/genética , Variación Genética/efectos de la radiación , Genotipo , Meiosis/genética , Plantas Modificadas Genéticamente/efectos de la radiación , Semillas/genética , Semillas/efectos de la radiación , Eliminación de Secuencia/genética , Eliminación de Secuencia/efectos de la radiación
17.
Ann Bot ; 111(5): 811-9, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23444123

RESUMEN

BACKGROUND AND AIMS: Plants growing at high densities perceive a decrease in the red to far-red (R/FR) ratio of incoming light. These changes in light quality trigger a suite of responses collectively known as the shade-avoidance syndrome (SAS) including hypocotyl and stem elongation, inhibition of branching and acceleration of flowering. METHODS: Quantitative trait loci (QTLs) were mapped for hypocotyl length to end-of-day far-red (EOD), a simulated shade-avoidance response, in recombinant inbred line (RIL) populations of Arabidopsis thaliana seedlings, derived from Landsberg erecta (Ler) and three accessions (Columbia, Col; Nossen, No-0; and Cape Verde Islands, Cvi-0). KEY RESULTS: Five loci were identified as being responsible for the EOD response, with a positive contribution of Ler alleles on the phenotype independently of the RIL population. Quantitative complementation analysis and transgenic lines showed that PHYB is the candidate gene for EODRATIO5 in the Ler × Cvi-0 RIL population, but not for two co-localized QTLs, EODRATIO1 and EODRATIO2 mapped in the Ler × No-0 and Ler × Col RIL populations, respectively. The ERECTA gene was also implicated in the SAS in a background-dependent manner. For hypocotyl length EOD response, a positive contribution of erecta alleles was found in Col and Van-0, but not in Ler, Cvi-0, Hir-1 or Ws. Furthermore, pleiotropic effects of ERECTA in the EOD response were also detected for petiole and lamina elongation, hyponastic growth, and flowering time. CONCLUSIONS: The results show that the analysis of multiple mapping populations leads to a better understanding of the SAS genetic architecture. Moreover, the background- and trait-dependent contribution of ERECTA in the SAS suggest that its function in shaded natural environments may be relevant for some populations in different phases of plant development. It is proposed that ERECTA is involved in canalization processes buffering the genetic variation of the SAS against environmental light fluctuations.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimología , Arabidopsis/fisiología , Proteínas Serina-Treonina Quinasas/metabolismo , Receptores de Superficie Celular/metabolismo , Arabidopsis/genética , Arabidopsis/efectos de la radiación , Proteínas de Arabidopsis/genética , Emparejamiento Base/genética , Cromosomas de las Plantas/genética , Ecotipo , Estudios de Asociación Genética , Pleiotropía Genética/efectos de la radiación , Variación Genética/efectos de la radiación , Genotipo , Hipocótilo/crecimiento & desarrollo , Hipocótilo/efectos de la radiación , Endogamia , Luz , Fitocromo B/genética , Proteínas Serina-Treonina Quinasas/genética , Sitios de Carácter Cuantitativo/genética , Carácter Cuantitativo Heredable , Receptores de Superficie Celular/genética
18.
J Radiat Res ; 52(3): 342-50, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21467739

RESUMEN

The human T-cell leukemia cell line MOLT-4 is highly radiosensitive, and thus it is often used as a model of p53-dependent radiation-induced apoptosis. Two branches of the p53-mediated apoptotic pathway are reported: "transcription-dependent" and "transcription-independent." However, the relative contribution of each in different types of cells is not yet clearly defined. Moreover, recent studies have shown that the codon 72 polymorphic variants of p53 show different sensitivities to apoptosis signals. The Arg72 variant has a more potent apoptosis-inducing activity in mitochondria than the Pro72 variant. Here, we initially investigated the codon 72 polymorphism of p53 in MOLT-4 cells. Analysis of the p53 exon 4 genomic DNA sequence, which includes codon 72, revealed that MOLT-4 cells are homozygous for the allele encoding Arg72. We next investigated the involvement of the transcription-independent function of p53 using an RNA synthesis inhibitor, actinomycin D (ActD), and a protein synthesis inhibitor, cycloheximide (CHX), and found that the apoptosis was suppressed by CHX but not by ActD. We also revealed that the suppressive effect of CHX on apoptosis was specifically mediated by p53, using a p53-knockdown MOLT-4 transfectant. Furthermore, the suppressive effect of CHX on apoptosis was highly correlated with the suppression of p53 protein accumulation, and less correlated with the suppression of p53 target genes expression. These results indicated that p53 transactivation is not necessary to induce apoptosis, and that p53 protein accumulation itself is both necessary and sufficient to do so.


Asunto(s)
Apoptosis/efectos de los fármacos , Apoptosis/efectos de la radiación , Cicloheximida/farmacología , Leucemia de Células T/metabolismo , Transducción de Señal/efectos de la radiación , Proteína p53 Supresora de Tumor/metabolismo , Arginina/genética , Arginina/efectos de la radiación , Línea Celular Tumoral , Variación Genética/genética , Variación Genética/efectos de la radiación , Humanos , Transporte de Proteínas/efectos de la radiación , Proteína p53 Supresora de Tumor/genética
19.
Genetika ; 47(10): 1371-7, 2011 Oct.
Artículo en Ruso | MEDLINE | ID: mdl-22232925

RESUMEN

The level of genome instability (GI) was studied in the progeny of female mice exposed in the preconceptional period to radiation doses of 0.5, 1, and 2 Gy in comparison to that in the progeny of the same parent pairs born before irradiation of the females. To assess the level of genome instability, we analyzed polymorphism of DNA fragments from postmitotic (blood and brain) and proliferating (spleen and tail tip) tissues amplified by AP-PCR (PCR amplification with an arbitrary primer). It was found that polymorphism of the spectrum of AP-PCR products, which is a multilocus genetic marker (MGM), in the genome of somatic cells in the progeny of female mice exposed to 2 Gy was higher than in the progeny of male mice exposed to the same doses. In the progenies of female mice born before and after irradiation, tissue-specific variations in the level of DNA polymorphism were detected. The maximum value of this polymorphism (with respect to the frequency of "nonparental bands") was determined for peripheral blood DNA in comparison with the other tissues. Estimations of the MGM polymorphism with the AP-PCR method demonstrate an increased level of genome instability in somatic cells of offsprings from female mice exposed to a single acute dose of X-rays (0.5, 1, and 2 Gy) in the pre-conceptional period. Radiation-induced transgenerational genome instability with an increase in the dose of preconceptional irradiation of female mice was more pronounced in DNA of the postmitotic tissues (blood and brain DNA) than in DNA of the proliferating tissues (spleen and tail tip epithelium).


Asunto(s)
Variación Genética/efectos de la radiación , Inestabilidad Genómica/genética , Exposición Materna , Animales , ADN/sangre , Relación Dosis-Respuesta en la Radiación , Femenino , Masculino , Ratones , Ratones Endogámicos BALB C , Repeticiones de Microsatélite/genética , Repeticiones de Microsatélite/efectos de la radiación , Repeticiones de Minisatélite/genética , Repeticiones de Minisatélite/efectos de la radiación , Técnica del ADN Polimorfo Amplificado Aleatorio , Rayos X/efectos adversos
20.
Zh Obshch Biol ; 72(6): 455-71, 2011.
Artículo en Ruso | MEDLINE | ID: mdl-22292283

RESUMEN

Scots pine (Pinus sylvestris L.) populations in the vicinity of nuclear industry facilities were monitored. Aberrant cells occurrence in root meristem of germinated seeds from the impacted pine populations was found to be significantly above the reference level during all six years of observations. In the reference population, changes of cytogenetic disturbances with time appeared to be cyclic while in the impacted populations, technogenic stress was strong enough to destroy the natural regularities. The increase in cytogenetic disturbances was accompanied by growth of fluctuations magnitude; deviations of basic oscillation parameters from the reference values rose along with technogenic impact level. Variability in cytogenetic response increased under technogenic stress. Inter-family component of variability predominated, though its contribution slightly decreased in impacted populations. A tendency for destabilization of a repetition coefficient dynamics was found under technogenic impact. A portion of the seeds was exposed to 15 Gy of gamma-rays, and higher radio-resistance in the impacted populations was observed. In the reference population, a family-related analysis of cytogenetic variability components after acute y-exposure revealed significant contributions of "family" and "germination conditions" factors as well as their interactions. On the contrary, in populations existing under chronic stress, considerable modifications in the structure of ecological-genetic variability were found, their degree increasing with technogenic impact severity.


Asunto(s)
Aberraciones Cromosómicas/efectos de la radiación , Rayos gamma , Variación Genética/efectos de la radiación , Germinación/efectos de la radiación , Meristema/efectos de la radiación , Pinus sylvestris/efectos de la radiación , Semillas/efectos de la radiación , Adaptación Fisiológica/efectos de la radiación , Citogenética , Ecología , Meristema/genética , Energía Nuclear , Reactores Nucleares , Pinus sylvestris/fisiología , Semillas/genética
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