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1.
Viruses ; 14(12)2022 11 25.
Artículo en Inglés | MEDLINE | ID: mdl-36560638

RESUMEN

Infectious pancreatic necrosis virus (IPNV) is the causative agent of rainbow trout (Oncorhynchus mykiss) IPN and causes significant loss of fingerlings. The currently prevalent IPNV genogroups in China are genogroups 1 and 5. However, in this study, we isolated and identified a novel IPNV, IPNV-P202019, which belonged to genogroup 7. Here, a total of 200 specific-pathogen-free rainbow trout (10 g average weight) were divided randomly into four groups to investigate the distribution of different IPNV strains (genogroups 1, 5, and 7) in 9 tissues of rainbow trout by means of intraperitoneal (ip) injection. Fish in each group were monitored after 3-, 7-, 14-, 21- and 28- days post-infection (dpi). The study showed no mortality in all groups. The distribution of IPNV genogroups 1 and 5 was similar in different tissues and had a higher number of viral loads after 3, 7, or 14 dpi. However, the distribution of IPNV genogroup 7 was detected particularly in the spleen, head kidney, and feces and had a lower number of viral loads. The results of this study provide valid data for the distribution of IPNV in rainbow trout tissues and showed that IPNV genogroups 1 and 5 were still the prevalent genogroups of IPNV in China. Although rainbow trout carried IPNV genogroup 7, the viral load was too low to be pathogenic.


Asunto(s)
Infecciones por Birnaviridae , Enfermedades de los Peces , Virus de la Necrosis Pancreática Infecciosa , Oncorhynchus mykiss , Animales , Virus de la Necrosis Pancreática Infecciosa/genética , Infecciones por Birnaviridae/veterinaria , Genotipo
2.
Appl Microbiol Biotechnol ; 106(19-20): 6535-6549, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-36069927

RESUMEN

Nannochloropsis oceanica is a unicellular oleaginous microalga of emerging biotechnological interest with a sequenced, annotated genome, available transcriptomic and proteomic data, and well-established basic molecular tools for genetic engineering. To establish N. oceanica as a eukaryotic host for recombinant protein synthesis and develop molecular technology for vaccine production, we chose the viral surface protein 2 (VP2) of a pathogenic fish virus that causes infectious pancreatic necrosis as a model vaccine. Upon stable nuclear transformation of N. oceanica strain CCMP1779 with the codon-optimized VP2 gene, a Venus reporter fusion served to evaluate the strength of different endogenous promoters in transformant populations by qPCR and flow cytometry. The highest VP2 yields were achieved for the elongation factor promoter, with enhancer effects by its N-terminal leader sequence. Individual transformants differed in their production capability of reporter-free VP2 by orders of magnitude. When subjecting the best candidates to kinetic analyses of growth and VP2 production in photobioreactors, recombinant protein integrity was maintained until the early stationary growth phase, and a high yield of 4.4% VP2 of total soluble protein was achieved. The maximum yield correlated with multiple integrations of the expression vector into the nuclear genome. The results demonstrate that N. oceanica was successfully engineered to constitute a robust platform for high-level production of a model subunit vaccine. The molecular methodology established here can likely be adapted in a straightforward manner to the production of further vaccines in the same host, allowing their distribution to fish, vertebrates, or humans via a microalgae-containing diet. KEY POINTS: • We engineered N. oceanica for recombinant protein production. • The antigenic surface protein 2 of IPN virus could indeed be expressed in the host. • A high yield of 4.4% VP2 of total soluble protein was achieved in N. oceanica.


Asunto(s)
Virus de la Necrosis Pancreática Infecciosa , Estramenopilos , Vacunas Virales , Animales , Peces , Humanos , Virus de la Necrosis Pancreática Infecciosa/genética , Proteínas de la Membrana , Factores de Elongación de Péptidos , Proteómica , Proteínas Recombinantes/genética , Estramenopilos/genética , Vacunación , Vacunas Virales/genética
3.
J Gen Virol ; 103(3)2022 03.
Artículo en Inglés | MEDLINE | ID: mdl-35349401

RESUMEN

The infectious pancreatic necrosis virus (IPNV) is responsible for significant economic losses in the aquaculture industry. It is an unenveloped virus with an icosahedral capsid. Its viral genome comprises two dsRNA segments, A and B. Segment A contains a small ORF, which encodes VP5, and a large ORF, which encodes a polyprotein that generates the structural proteins and the viral protease. Segment B encodes the RNA-dependent RNA polymerase (RdRp), called VP1 in this free form, or Vpg when it covalently attaches to the viral RNA. The viral genome does not have cap or poly(A). Instead, each 5' end is linked to the Vpg. Recently, we demonstrated that mRNA-A contains an internal ribosome entry site (IRES) to command polyprotein synthesis. However, the presence of Vpg on IPNV mRNAs and its impact on cellular translation has not been investigated. This research demonstrates that IPNV mRNAs are linked to Vpg and that this protein inhibits cap-dependent translation on infected cells. Also, it is demonstrated that Vpg interacts with eIF4E and that rapamycin treatment partially diminishes the viral protein synthesis. In addition, we determined that an IRES does not command translation of IPNV mRNA-B. We show that VPg serves as a cap substitute during the initiation of IPNV translation, contributing to understanding the replicative cycle of Birnaviruses. Our results indicate that the viral protein VP1/Vpg is multifunctional, having a significant role during IPNV RNA synthesis as the RdRp and the primer for IPNV RNA synthesis and translation as the viral protein genome, acting as a cap substitute.


Asunto(s)
Virus de la Necrosis Pancreática Infecciosa , Virus de la Necrosis Pancreática Infecciosa/genética , Sitios Internos de Entrada al Ribosoma , Poliproteínas/genética , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN Viral/genética , ARN Viral/metabolismo , ARN Polimerasa Dependiente del ARN/genética , Proteínas Virales/genética , Proteínas Virales/metabolismo
4.
J Fish Dis ; 45(2): 327-334, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-34778996

RESUMEN

Infectious pancreatic necrosis (IPN) is a highly contagious disease of young salmonid fish and is one of the most severe economic diseases in aquaculture. In Turkey, an increase in infectious pancreatic necrosis virus (IPNV) outbreaks in freshwater rainbow trout have been reported in recent years. This study aimed to analyze the VP2 gene from recent IPNV isolates from Turkey to determine whether there are epidemiological links between IPNV isolates from rainbow trout (Oncorhynchus mykiss; 62) and sea bass (Dicentrarchus labrax; 1), wild turbot (Scophthalmus maximus; 1) and the environment in order to investigate potential wild and farmed fish interactions. In this study, 62 Turkish IPNV isolates collected over 10 years (2005-2014) from rainbow trout, sea bass and turbot were genotypically characterized. The phylogenetic analysis indicated that Turkish IPNV isolates are closely related to strains from Denmark, Iran and Spain and that all Turkish IPNV isolates belong to genogroup V, serotype A2 (Sp strain). Furthermore, low genetic diversity was found among the Turkish isolates (identity, 95.5%-100% nucleotides and 97.8%-100% amino acids). The result of the analysis of the amino acid residues found at positions 217, 221 and 247 (proline, threonine and alanine, respectively) could be associated with virulence.


Asunto(s)
Infecciones por Birnaviridae , Enfermedades de los Peces , Virus de la Necrosis Pancreática Infecciosa , Oncorhynchus mykiss , Animales , Infecciones por Birnaviridae/epidemiología , Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/epidemiología , Virus de la Necrosis Pancreática Infecciosa/genética , Filogenia , Turquía/epidemiología , Virulencia
5.
Viruses ; 13(3)2021 03 16.
Artículo en Inglés | MEDLINE | ID: mdl-33809489

RESUMEN

Passive virus surveillance was performed in twenty-nine salmon and trout farms from seven provinces and districts in China during the period 2017-2020. A total of 25 infectious pancreatic necrosis virus (IPNV) isolates were obtained, mainly from rainbow trout (Oncorhynchus mykiss). The molecular evolution of these Chinese IPNV isolates and the previously reported Chinese IPNV strains ChRtm213 and WZ2016 was analyzed, based on their VP2 gene coding region sequences (CDS). All 27 Chinese IPNV isolates clustered within genogroups I and V, with 24 of the IPNV isolates belonging to genogroup I (including ChRtm213 and WZ2016), and only three isolates clustering in genogroup V. The Chinese genogroup I IPNV isolates lacked diversity, composing six haplotypes with 41 polymorphic sites, and the identity of nucleotide and amino acid sequences among the entire VP2 gene CDS from these isolates was 97.44%-100% and 98.19%-100%, respectively. Divergence time analyses revealed that the Chinese genogroup I IPNV isolates likely diverged from Japanese IPNV isolates in 1985 (95% highest posterior density (HPD), 1965-1997), and diverged again in 2006 (95% HPD, 1996-2013) in China. Each of the three Chinese genogroup V IPNV isolates has a unique VP2 gene CDS, with a total of 21 polymorphic sites; the identity of nucleotide and amino acid sequences among all VP2 gene CDS from these isolates was 98.5%-99.5% and 98.6%-99.0%, respectively. The data demonstrate that genogroups I and V are more likely the currently prevalent Chinese IPNV genotypes.


Asunto(s)
Infecciones por Birnaviridae , Enfermedades de los Peces/epidemiología , Virus de la Necrosis Pancreática Infecciosa , Oncorhynchus mykiss/virología , Animales , Infecciones por Birnaviridae/epidemiología , Infecciones por Birnaviridae/veterinaria , China/epidemiología , Evolución Molecular , Genotipo , Virus de la Necrosis Pancreática Infecciosa/genética , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación
6.
Viruses ; 13(3)2021 02 28.
Artículo en Inglés | MEDLINE | ID: mdl-33670941

RESUMEN

The aquatic virus, infectious pancreatic necrosis virus (IPNV), is known to infect various farmed fish, in particular salmonids, and is responsible for large economic losses in the aquaculture industry. Common practices to detect the virus include qPCR tests based on specific primers and serum neutralization tests for virus serotyping. Following the potential presence of IPNV viruses in a fish farm in Scotland containing vaccinated and IPNV-resistant fish, the common serotyping of the IPNV isolates was not made possible. This led us to determine the complete genome of the new IPNV isolates in order to investigate the cause of the serotyping discrepancy. Next-generation sequencing using the Illumina technology along with the sequence-independent single primer amplification (SISPA) approach was conducted to fully characterize the new Scottish isolates. With this approach, the full genome of two isolates, V1810-4 and V1810-6, was determined and analyzed. The potential origin of the virus isolates was investigated by phylogenetic analyses along with tridimensional and secondary protein structure analyses. These revealed the emergence of a new variant from one of the main virus serotypes, probably caused by the presence of selective pressure exerted by the vaccinated IPNV-resistant farmed fish.


Asunto(s)
Infecciones por Birnaviridae/virología , Virus de la Necrosis Pancreática Infecciosa/genética , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Oncorhynchus mykiss/virología , Animales , Acuicultura , Células Cultivadas , Enfermedades de los Peces/virología , Explotaciones Pesqueras , Genoma/genética , Filogenia , Escocia , Serogrupo , Proteínas Estructurales Virales/genética
7.
J Vet Med Sci ; 82(3): 394-398, 2020 Mar 24.
Artículo en Inglés | MEDLINE | ID: mdl-31969539

RESUMEN

Infectious pancreatic necrosis virus (IPNV) causes economic losses in Mexican rainbow trout industry. In this study, virulence and genetic fingerprints of Mexican IPNV isolates was investigated for the first time. Two Mexican IPNV isolates were analyzed in rainbow trout fry and the Sp strain was included as high virulence. One of the Mexican IPNV isolate was obtained from diseased fish and the other from fish without clinical signs. The infection was performed using a standardized immersion. Clinical signs were observed at 4 days post infection in fry group infected with strain Sp, two days earlier than in trout infected with IPNV isolates Mexican. Severe lesions were found in 100% of the individuals of Sp group, but only in 25% of each isolated Mexican group. Results suggest that Mexican IPNV isolates are pathogenic, but less virulent than strain Sp. The amino acid motif residues of both Mexican isolates, corresponded to a subclinical disease. Nevertheless, the accumulated motility observed in the field, suggest that other factors play a role in the virulence of the disease.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/virología , Virus de la Necrosis Pancreática Infecciosa/patogenicidad , Secuencias de Aminoácidos , Animales , Infecciones por Birnaviridae/virología , Virus de la Necrosis Pancreática Infecciosa/genética , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , México , Oncorhynchus mykiss , Virulencia
8.
J Fish Dis ; 43(1): 139-146, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31724200

RESUMEN

Infectious pancreatic necrosis virus (IPNV) is the aetiological agent of a highly contagious disease that affects farmed salmonids. IPNV isolates have been phylogenetically classified into eight genogroups, of which two are present in Chile, genogroups 1 and 5. Here, we compare the mortality rate caused by isolates from both genogroups in rainbow trout (Oncorhynchus mykiss) fry to determine if there is an association between host susceptibility and phylogenetic characterization of IPNV. Fish were challenged by immersion with one of four isolates (two for each genogroup), and mortality curves were assessed after 30 days. Viral load was measured in all mortalities and in live fish sampled at 1, 7 and 20 days post-infection. Although mortality was low throughout the challenge, differences were found between fish infected with different isolates. Both isolates from genogroup 1 caused greater cumulative mortalities than either of the isolates from genogroup 5. When combined, the overall mortality rate of fish challenged with genogroup 1 isolates was significantly higher than those infected with genogroup 5. However, viral load was lower on trout infected with genogroup 1 isolates. These results suggest that rainbow trout are more susceptible to IPNV isolates from genogroup 1 than genogroup 5.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/mortalidad , Virus de la Necrosis Pancreática Infecciosa/fisiología , Oncorhynchus mykiss , Carga Viral/veterinaria , Animales , Infecciones por Birnaviridae/mortalidad , Infecciones por Birnaviridae/virología , Chile/epidemiología , Enfermedades de los Peces/virología , Genotipo , Virus de la Necrosis Pancreática Infecciosa/genética , Filogenia
9.
J Fish Dis ; 42(5): 631-642, 2019 May.
Artículo en Inglés | MEDLINE | ID: mdl-30874325

RESUMEN

Infectious hematopoietic necrosis virus (IHNV) and infectious pancreatic necrosis virus (IPNV) are important pathogens in rainbow trout farming worldwide. Their co-infection is also common, which causes great economic loss in juvenile salmon species. Development of a universal virus vaccine providing broadly cross-protective immunity will be of great importance. In this study, we generated two recombinant (r) virus (rIHNV-N438A-ΔNV-EGFP and rIHNV-N438A-ΔNV-VP2) replacing the NV gene of the backbone of rIHNV at the single point mutation at residue 438 with an efficient green fluorescent protein (EGFP) reporter gene and antigenic VP2 gene of IPNV. Meanwhile, we tested their efficacy against the wild-type (wt) IHNV HLJ-09 virus and IPNV serotype Sp virus challenge. The relative per cent survival rates of two recombinant viruses against (wt) IHNV HLJ-09 virus challenge were 84.6% and 81.5%, respectively. Simultaneously, the relative per cent survival rate of rIHNV-N438A-ΔNV-VP2 against IPNV serotype Sp virus challenge was 88.9%. It showed the two recombinant viruses had high protection rates and induced a high level of antibodies against IHNV or IPNV. Taken together, these results suggest the VP2 gene of IPNV can act as candidate gene for vaccine and attenuated multivalent live vaccines and molecular marker vaccines have potential application for viral vaccine.


Asunto(s)
Inmunidad Adaptativa , Enfermedades de los Peces/prevención & control , Virus de la Necrosis Hematopoyética Infecciosa/inmunología , Virus de la Necrosis Pancreática Infecciosa/inmunología , Oncorhynchus mykiss , Vacunas Virales/inmunología , Animales , Infecciones por Birnaviridae/inmunología , Infecciones por Birnaviridae/prevención & control , Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/inmunología , Virus de la Necrosis Hematopoyética Infecciosa/genética , Virus de la Necrosis Pancreática Infecciosa/genética , Distribución Aleatoria , Infecciones por Rhabdoviridae/inmunología , Infecciones por Rhabdoviridae/prevención & control , Infecciones por Rhabdoviridae/veterinaria , Vacunas Sintéticas/administración & dosificación , Vacunas Sintéticas/genética , Vacunas Sintéticas/inmunología , Vacunas Virales/administración & dosificación , Vacunas Virales/genética
10.
J Gen Virol ; 99(12): 1567-1581, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30358526

RESUMEN

In order to obtain an insight into genomic changes and associated evolution and adaptation of Infectious Pancreatic Necrosis Virus (IPNV), the complete coding genomes of 57 IPNV isolates collected from Scottish aquafarms from 1982 to 2014 were sequenced and analysed. Phylogenetic analysis of the sequenced IPNV strains showed separate clustering of genogroups I, II, III and V. IPNV isolates with genetic reassortment of segment A/B of genogroup III/II were determined. About 59 % of the IPNV isolates belonged to the persistent type and 32 % to the low-virulent type, and only one highly pathogenic strain (1.79 %) was identified. Codon adaptation index calculations indicated that the IPNV major capsid protein VP2 has adapted to its salmonid host. Under-representation of CpG dinucleotides in the IPNV genome to minimize detection by the innate immunity receptors, and observed positive selection in the virulence determination sites of VP2 embedded in the variable region of the main antigenic region, suggest an immune escape mechanism driving virulence evolution. The prevalence of mostly persistent genotypes, together with the assumption of adaptation and immune escape, indicates that IPNV is evolving with the host.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/epidemiología , Enfermedades de los Peces/virología , Variación Genética , Virus de la Necrosis Pancreática Infecciosa/clasificación , Virus de la Necrosis Pancreática Infecciosa/genética , Adaptación Biológica , Animales , Acuicultura , Infecciones por Birnaviridae/epidemiología , Infecciones por Birnaviridae/virología , Proteínas de la Cápside/genética , Codón , Genotipo , Evasión Inmune , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Virus de la Necrosis Pancreática Infecciosa/patogenicidad , Epidemiología Molecular , Prevalencia , Escocia/epidemiología , Selección Genética , Análisis de Secuencia de ADN , Virulencia , Secuenciación Completa del Genoma
11.
J Fish Dis ; 41(10): 1601-1607, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30039862

RESUMEN

Infectious pancreatic necrosis (IPN) is an important restraint to production of salmonids in aquaculture globally. In order to implement efficacious mitigation strategies for control of this disease, it is important to understand infection routes under current production systems. IPN virus has been shown to be transmitted vertically in Rainbow trout, from broodstock to fingerlings in hatcheries, and there is circumstantial evidence suggesting that vertical transmission can also occur in Atlantic salmon, in addition to horizontal transmission between grow-out fish in farms. In this study, we show that the smolt carries infection with IPN from hatchery to the marine farm. We do this by comparing sequences from fish groups taken both in hatcheries and on corresponding marine grow-out farms. We use statistical analysis to prove that sequences obtained from the same fish group in both hatchery and marine farm are more similar than sequences obtained from random fish groups on hatcheries and marine farms.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Trazado de Contacto/métodos , Enfermedades de los Peces/transmisión , Virus de la Necrosis Pancreática Infecciosa/genética , Oncorhynchus mykiss/virología , Enfermedades Pancreáticas/veterinaria , Factores de Edad , Animales , Acuicultura , Infecciones por Birnaviridae/epidemiología , Infecciones por Birnaviridae/prevención & control , Infecciones por Birnaviridae/transmisión , Enfermedades de los Peces/epidemiología , Enfermedades de los Peces/virología , Explotaciones Pesqueras , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Oncorhynchus mykiss/crecimiento & desarrollo , Oncorhynchus mykiss/fisiología , Enfermedades Pancreáticas/epidemiología , Enfermedades Pancreáticas/prevención & control , Enfermedades Pancreáticas/virología , Salmo salar/virología , Análisis de Secuencia de ADN
12.
Mol Immunol ; 94: 61-67, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-29274924

RESUMEN

IPNV in Atlantic salmon is represented by various strains with different virulence and immunogenicity linked to various motifs of the VP2 capsid. IPNV variant with P217, T221, A247 (PTA) motif is found to be avirulent in Atlantic salmon, but virulent in rainbow trout, and other salmonid species. This study describes a DNA vaccine delivered intramuscularly encoding the VP2 protein of infectious pancreatic necrosis virus (IPNV) with PTA motif that confers high protection in rainbow trout (Oncorhynchus mykiss). Intramuscular injection of 2, 5 and 10 µg of DNA (pcDNA3.1-VP2) in rainbow trout fry (4-5 g), confers relative protection of 75-83% in the different vaccine groups at 30 days post vaccination (450° days). The VP2 gene is expressed in spleen, kidney, muscle and liver at day 30 post-vaccination (RT-PCR), and IFN-1 and Mx-1 mRNA are upregulated at early time post vaccination, and so also for IgM, IgT, CD4 and CD8 in the head kidney of vaccinated fish compared to controls, 15 and 30 days post vaccination. Significant increase of serum anti-IPNV antibodies was found 30-90 days post-vaccination that was correlated with protection levels. Mortality corresponded with viral VP4 gene expression were significantly decreased in vaccinated and challenged fish. This shows for the first time that a VP2-encoding DNA vaccine delivered intramuscularly elicits a high level of protection alongside with high levels of circulating antibodies in rainbow trout and a lowered viral replication.


Asunto(s)
Infecciones por Birnaviridae/terapia , Enfermedades de los Peces/terapia , Virus de la Necrosis Pancreática Infecciosa/inmunología , Oncorhynchus mykiss , Vacunas de ADN/uso terapéutico , Proteínas Estructurales Virales/genética , Secuencias de Aminoácidos/genética , Secuencias de Aminoácidos/inmunología , Animales , Infecciones por Birnaviridae/inmunología , Infecciones por Birnaviridae/veterinaria , Células Cultivadas , Enfermedades de los Peces/inmunología , Virus de la Necrosis Pancreática Infecciosa/genética , Oncorhynchus mykiss/inmunología , Oncorhynchus mykiss/virología , Proteínas Estructurales Virales/química , Proteínas Estructurales Virales/inmunología , Proteínas Estructurales Virales/uso terapéutico , Vacunas Virales/uso terapéutico
13.
J Fish Dis ; 41(1): 95-104, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-28745835

RESUMEN

Infectious pancreatic necrosis virus (IPNV) is a common pathogen of rainbow trout (Oncorhynchus mykiss) in Turkey. We found that 455 of 1,676 sample pools tested were IPNV positive. Positive samples were found in all geographical regions where sampling was conducted. Sequence and phylogenetic analyses of VP2 from 30 isolates representing all regions showed that the viruses were highly similar in sequence and grouped within Genogroup 5 (serotype Sp-A2). No correlations between sequences, sampling sites or geographical origins were identified. Although clinical disease was evident in several farms, analyses of the amino acid sequence of VP2 showed that all virus strains harboured the P217 T221 motif, assumed to be associated with low virulence. We conclude that IPNV is prevalent in Turkish rainbow trout farms and that the viruses are very homogenous and likely to be of European origin. Frequent exchange of eggs and live fish within the farming industry may explain the homogeneity of the IPNV.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/virología , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Oncorhynchus mykiss/virología , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Animales , Acuicultura , Infecciones por Birnaviridae/virología , Enfermedades de los Peces/epidemiología , Virus de la Necrosis Pancreática Infecciosa/genética , Filogenia , Serogrupo , Turquía/epidemiología
14.
Arch Virol ; 162(11): 3459-3471, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-28795226

RESUMEN

Infectious pancreatic necrosis virus (IPNV) has been isolated annually since 1987 from salmonids without clinical signs at coastal fish farms in Finland. In the inland area, viral isolations were rare until 2012, when IPNV was detected at several freshwater fish farms. Between 2013 and 2015, the infection spread and IPNV was continuously isolated from several farms, both inland and on the coast. The aim of this study was to genetically characterise the IPNV isolates collected from Finnish coastal and inland fish farms over the last 15 years, and to detect genetic changes that may have occurred in the virus populations during the study period. The partial VP2 gene sequence from 88 isolates was analysed. In addition, a complete genomic coding sequence was obtained from 11 isolates. Based on the genetic analyses, Finnish IPNV isolates belong to three genogroups: 2, 5 and 6. The genetic properties of the isolates appear to vary between inland farms producing juveniles and food fish farms in the coastal region: the inland farms harboured genogroup 2 isolates, whereas at coastal farms, all three genogroups were detected. Little genetic variation was observed within the Finnish genogroup 2 and 5 isolates, whereas among the genogroup 6 isolates, two subgroups were detected. All isolates studied demonstrated amino acid patterns in the viral VP2 gene previously associated with avirulence. However, increased mortality was detected at some of the farms, indicating that more research is needed to clarify the relationship between the pathogenicity and genetic properties of IPNV isolates from different genogroups.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/virología , Virus de la Necrosis Pancreática Infecciosa , Salmonidae , Animales , Acuicultura , Infecciones por Birnaviridae/epidemiología , Infecciones por Birnaviridae/virología , Finlandia/epidemiología , Regulación Viral de la Expresión Génica , Genoma Viral , Virus de la Necrosis Pancreática Infecciosa/genética , Filogenia , Proteínas Estructurales Virales/genética , Proteínas Estructurales Virales/metabolismo
15.
Virus Res ; 240: 121-129, 2017 08 15.
Artículo en Inglés | MEDLINE | ID: mdl-28743463

RESUMEN

The infectious pancreatic necrosis virus (IPNV) is a salmonid pathogen that causes significant economic losses to the aquaculture industry. IPNV is a non-enveloped virus containing two uncapped and non-polyadenylated double strand RNA genomic segments, RNA-A and RNA-B. The viral protein Vpg is covalently attached to the 5' end of both segments. There is little knowledge about its viral cycle, particularly about the translation of the RNAs. Through experiments using mono and bicistronic reporters, in this work we show that the 120-nucleotide-long 5'-UTR of RNA-A contains an internal ribosome entry site (IRES) that functions efficiently both in vitro and in salmon cells. IRES activity is strongly dependent on temperature. Also, the IRES structure is confined to the 5'UTR and is not affected by the viral coding sequence. This is the first report of IRES activity in a fish virus and can give us tools to generate antivirals to attack the virus without affecting fish directly.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Enfermedades de los Peces/virología , Virus de la Necrosis Pancreática Infecciosa/genética , Biosíntesis de Proteínas , ARN Viral/genética , Regiones no Traducidas 5' , Animales , Infecciones por Birnaviridae/virología , Regulación Viral de la Expresión Génica , Virus de la Necrosis Pancreática Infecciosa/química , Virus de la Necrosis Pancreática Infecciosa/metabolismo , Sitios Internos de Entrada al Ribosoma , Conformación de Ácido Nucleico , ARN Mensajero/química , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN Viral/química , ARN Viral/metabolismo , Ribosomas/genética , Ribosomas/metabolismo , Salmo salar , Proteínas Virales/genética , Proteínas Virales/metabolismo
16.
Electron. j. biotechnol ; 28: 20-26, July. 2017. tab, graf
Artículo en Inglés | LILACS | ID: biblio-1015729

RESUMEN

Background: Infectious Pancreatic Necrosis Virus (IPNV) is the etiological agent of a highly contagious disease that affects salmonids. In Chile, the second worldwide salmon producer, IPNV causes great economic loss and is one of the most frequently detected pathogens. Due to its high level of persistence and the lack of information about the efficiency of its diagnostic techniques, the National Reference Laboratory (NRL) for IPNV in Chile performed the first inter-laboratory ring trial, to evaluate the sensitivity, specificity and repeatability of the qRT-PCR detection methods used in the country. Results: Results showed 100% in sensitivity and specificity in most of the laboratories. Only three of the twelve participant laboratories presented problems in sensitivity and one in specificity. Problems in specificity (false positives) were most likely caused by cross contamination of the samples, while errors in sensitivity (false negatives) were due to detection problems of the least concentrated viral sample. Regarding repeatability, many of the laboratories presented great dispersion of the results (Ct values) for replicate samples over the three days of the trial. Moreover, large differences in the Ct values for each sample were detected among all the laboratories. Conclusions: Overall, the ring trial showed high values of sensitivity and specificity, with some problems of repeatability and inter-laboratory variability. This last issue needs to be addressed in order to allow harmonized diagnostic of IPNV within the country. We recommend the use of the NRL methods as validated and reliable qRT-PCR protocols for the detection of IPNV.


Asunto(s)
Animales , Salmonidae/virología , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Infecciones por Birnaviridae/diagnóstico , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/normas , Reacción en Cadena en Tiempo Real de la Polimerasa/normas , Enfermedades de los Peces/diagnóstico , ARN Viral/genética , Variaciones Dependientes del Observador , Chile , Sensibilidad y Especificidad , Virus de la Necrosis Pancreática Infecciosa/genética , Infecciones por Birnaviridae/virología , Acuicultura , Reacciones Falso Negativas , Reacciones Falso Positivas , Enfermedades de los Peces/virología , Laboratorios
17.
J Virol Methods ; 247: 68-76, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28559129

RESUMEN

Infectious pancreatic necrosis virus (IPNV) causes great losses in fish hatcheries world-wide. The detection of IPNV can be challenging in certain circumstances, particularly due to low viral load and the genetic variability of this RNA virus. For the first time, this project created a quantitative triplex real-time reverse transcription PCR (RT-qPCR), including an endogenous control system, for specific, sensitive and rapid detection of IPNV in routine diagnostics. Multiple sequence alignment of 46 nucleotide sequences of the segment A genome obtained from the NCBI database allowed the design of two RT-qPCR systems covering the IPNV genogroup 1 and genogroups 2-5, respectively. The completed triplex RT-qPCR including a salmonid-specific endogenous control showed high specificity and an analytical sensitivity of 20-40 oligonucleotide copies. Testing of dilution series of virus-loaded cell culture suspensions proved equality of the triplex RT-qPCR with virus detection in cell culture and a higher sensitivity than conventional RT-PCR in field samples. In comparative studies of a total of 77 field samples tested, 51 showed identical positive and 19 identical negative results in cell culture and the triplex RT-qPCR. However, seven other samples yielded positive results in the triplex RT-qPCR, but negative results in cell culture.


Asunto(s)
Genotipo , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Reacción en Cadena de la Polimerasa Multiplex/métodos , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Virus de la Necrosis Pancreática Infecciosa/clasificación , Virus de la Necrosis Pancreática Infecciosa/genética , Reacción en Cadena de la Polimerasa Multiplex/normas , Reacción en Cadena en Tiempo Real de la Polimerasa/normas , Estándares de Referencia , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/normas , Sensibilidad y Especificidad
18.
Arch Virol ; 162(8): 2467-2471, 2017 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-28439709

RESUMEN

An aquabirnavirus was isolated from diseased marbled eels (Anguilla marmorata; MEIPNV1310) with gill haemorrhages and associated mortality. Its genome segment sequences were obtained through next-generation sequencing and compared with published aquabirnavirus sequences. The results indicated that the genome sequence of MEIPNV1310 contains segment A (3099 nucleotides) and segment B (2789 nucleotides). Phylogenetic analysis showed that MEIPNV1310 is closely related to the infectious pancreatic necrosis Ab strain within genogroup II. This genome sequence is beneficial for studying the geographic distribution and evolution of aquabirnaviruses.


Asunto(s)
Aquabirnavirus/genética , Aquabirnavirus/aislamiento & purificación , Infecciones por Birnaviridae/veterinaria , Anguilas/virología , Enfermedades de los Peces/virología , Genoma Viral , Animales , Aquabirnavirus/clasificación , Aquabirnavirus/patogenicidad , Acuicultura , Infecciones por Birnaviridae/virología , Branquias/patología , Branquias/virología , Hemorragia/veterinaria , Hemorragia/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Virus de la Necrosis Pancreática Infecciosa/genética , Filogenia , Análisis de Secuencia de ADN , Taiwán
19.
Virol J ; 14(1): 17, 2017 01 31.
Artículo en Inglés | MEDLINE | ID: mdl-28143585

RESUMEN

BACKGROUND: The infectious pancreatic necrosis virus (IPNV) causes significant economic losses in Chilean salmon farming. For effective sanitary management, the IPNV strains present in Chile need to be fully studied, characterized, and constantly updated at the molecular level. METHODS: In this study, 36 Chilean IPNV isolates collected over 6 years (2006-2011) from Salmo salar, Oncorhynchus mykiss, and Oncorhynchus kisutch were genotypically characterized. Salmonid samples were obtained from freshwater, estuary, and seawater sources from central, southern, and the extreme-south of Chile (35° to 53°S). RESULTS: Sequence analysis of the VP2 gene classified 10 IPNV isolates as genogroup 1 and 26 as genogroup 5. Analyses indicated a preferential, but not obligate, relationship between genogroup 5 isolates and S. salar infection. Fifteen genogroup 5 and nine genogroup 1 isolates presented VP2 gene residues associated with high virulence (i.e. Thr, Ala, and Thr at positions 217, 221, and 247, respectively). Four genogroup 5 isolates presented an oddly long VP5 deduced amino acid sequence (29.6 kDa). Analysis of the VP2 amino acid motifs associated with clinical and subclinical infections identified the clinical fingerprint in only genogroup 5 isolates; in contrast, the genogroup 1 isolates presented sequences predominantly associated with the subclinical fingerprint. Predictive analysis of VP5 showed an absence of transmembrane domains and plasma membrane tropism signals. WebLogo analysis of the VP5 BH domains revealed high identities with the marine birnavirus Y-6 and Japanese IPNV strain E1-S. Sequence analysis for putative 25 kDa proteins, coded by the ORF between VP2 and VP4, exhibited three putative nuclear localization sequences and signals of mitochondrial tropism in two isolates. CONCLUSIONS: This study provides important advances in updating the characterizations of IPNV strains present in Chile. The results from this study will help in identifying epidemiological links and generating specific biotechnological tools for controlling IPNV outbreaks in Chilean salmon farming.


Asunto(s)
Infecciones por Birnaviridae/veterinaria , Variación Genética , Virus de la Necrosis Pancreática Infecciosa/genética , Virus de la Necrosis Pancreática Infecciosa/aislamiento & purificación , Oncorhynchus kisutch/virología , Oncorhynchus mykiss/virología , Salmo salar/virología , Animales , Acuicultura , Infecciones por Birnaviridae/virología , Chile , Genotipo , Virus de la Necrosis Pancreática Infecciosa/clasificación , Análisis de Secuencia de ADN , Proteínas Estructurales Virales/genética
20.
Arch Virol ; 162(4): 1037-1041, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-28005211

RESUMEN

Viral hemorrhagic septicemia virus (VHSV) and infectious pancreatic necrosis virus (IPNV) are economically important pathogens of the salmonid aquaculture industry. In previous work we demonstrated that a cell line persistently infected with IPNV (EPCIPNV) exhibited antiviral activity against superinfection with the heterologous virus VHSV. This work extends our study by analyzing the replication of VHSV in the IPNV-persistently infected cells. At early and late stages of infection VHSV RNA synthesis, as well as VHSV-induced syncytia formation, were examined in EPCIPNV cultures. During the course of VHSV infection the accumulation of VHSV RNA is inhibited in EPCIPNV cells. Typical VHSV-induced membrane fusion at the late stages of infection is also absent in the IPNV carrier cultures. VHSV binding and fusion to EPCIPNV cells did not appear to be impaired, but a potent inhibitory effect on VHSV RNA synthesis is exerted at early times of infection in the IPNV carrier culture. In conclusion, the EPCIPNV cells are considered to be a useful system to study viral interference as well to analyze the mechanisms underlying the phenomenon of superinfection exclusion.


Asunto(s)
Enfermedades de los Peces/virología , Virus de la Necrosis Pancreática Infecciosa/fisiología , Novirhabdovirus/fisiología , Infecciones por Rhabdoviridae/veterinaria , Replicación Viral , Animales , Técnicas de Cultivo de Célula , Línea Celular , Virus de la Necrosis Pancreática Infecciosa/genética , Virus de la Necrosis Pancreática Infecciosa/crecimiento & desarrollo , Novirhabdovirus/genética , Novirhabdovirus/crecimiento & desarrollo , Infecciones por Rhabdoviridae/virología , Salmonidae/virología , Cultivo de Virus
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