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1.
Sci Rep ; 14(1): 17956, 2024 Aug 02.
Artículo en Inglés | MEDLINE | ID: mdl-39095606

RESUMEN

The symptoms of diseases can vary among individuals and may remain undetected in the early stages. Detecting these symptoms is crucial in the initial stage to effectively manage and treat cases of varying severity. Machine learning has made major advances in recent years, proving its effectiveness in various healthcare applications. This study aims to identify patterns of symptoms and general rules regarding symptoms among patients using supervised and unsupervised machine learning. The integration of a rule-based machine learning technique and classification methods is utilized to extend a prediction model. This study analyzes patient data that was available online through the Kaggle repository. After preprocessing the data and exploring descriptive statistics, the Apriori algorithm was applied to identify frequent symptoms and patterns in the discovered rules. Additionally, the study applied several machine learning models for predicting diseases, including stepwise regression, support vector machine, bootstrap forest, boosted trees, and neural-boosted methods. Several predictive machine learning models were applied to the dataset to predict diseases. It was discovered that the stepwise method for fitting outperformed all competitors in this study, as determined through cross-validation conducted for each model based on established criteria. Moreover, numerous significant decision rules were extracted in the study, which can streamline clinical applications without the need for additional expertise. These rules enable the prediction of relationships between symptoms and diseases, as well as between different diseases. Therefore, the results obtained in this study have the potential to improve the performance of prediction models. We can discover diseases symptoms and general rules using supervised and unsupervised machine learning for the dataset. Overall, the proposed algorithm can support not only healthcare professionals but also patients who face cost and time constraints in diagnosing and treating these diseases.


Asunto(s)
Algoritmos , Aprendizaje Automático Supervisado , Aprendizaje Automático no Supervisado , Humanos , Masculino , Femenino , Máquina de Vectores de Soporte , Persona de Mediana Edad , Adulto , Enfermedad
2.
BMC Med Res Methodol ; 24(1): 167, 2024 Aug 02.
Artículo en Inglés | MEDLINE | ID: mdl-39095707

RESUMEN

PURPOSE: Propensity score matching is vital in epidemiological studies using observational data, yet its estimates relies on correct model-specification. This study assesses supervised deep learning models and unsupervised autoencoders for propensity score estimation, comparing them with traditional methods for bias and variance accuracy in treatment effect estimations. METHODS: Utilizing a plasmode simulation based on the Right Heart Catheterization dataset, under a variety of settings, we evaluated (1) a supervised deep learning architecture and (2) an unsupervised autoencoder, alongside two traditional methods: logistic regression and a spline-based method in estimating propensity scores for matching. Performance metrics included bias, standard errors, and coverage probability. The analysis was also extended to real-world data, with estimates compared to those obtained via a double robust approach. RESULTS: The analysis revealed that supervised deep learning models outperformed unsupervised autoencoders in variance estimation while maintaining comparable levels of bias. These results were supported by analyses of real-world data, where the supervised model's estimates closely matched those derived from conventional methods. Additionally, deep learning models performed well compared to traditional methods in settings where exposure was rare. CONCLUSION: Supervised deep learning models hold promise in refining propensity score estimations in epidemiological research, offering nuanced confounder adjustment, especially in complex datasets. We endorse integrating supervised deep learning into epidemiological research and share reproducible codes for widespread use and methodological transparency.


Asunto(s)
Aprendizaje Profundo , Puntaje de Propensión , Humanos , Aprendizaje Automático Supervisado , Modelos Logísticos , Cateterismo Cardíaco/métodos , Cateterismo Cardíaco/estadística & datos numéricos , Algoritmos , Simulación por Computador
3.
Stud Health Technol Inform ; 315: 305-310, 2024 Jul 24.
Artículo en Inglés | MEDLINE | ID: mdl-39049273

RESUMEN

Situation awareness (SA) is an important non-technical skill for nurses. Nurses interact directly with patients and review their clinical signs. If we improve nurses' SA, they will likely detect clinical changes and prevent patient harm. A clinical endeavor that can benefit from improved nurses' SA is the prevention of Healthcare-Acquired Urinary Tract Infection (HAUTI). Electronic Health Records contain comprehensive nursing assessment data that researchers can use to analyze trends and provide a context-based understanding of the infection risk factors. We conducted a study that involved extracting nursing assessment data and preparing it for supervised learning algorithms and predicting HAUTI. In this paper, we share the methods we used to prepare the data for supervised learning algorithms and present the challenges related to data missingness.


Asunto(s)
Infección Hospitalaria , Registros Electrónicos de Salud , Infecciones Urinarias , Infecciones Urinarias/prevención & control , Humanos , Infección Hospitalaria/prevención & control , Aprendizaje Automático Supervisado , Evaluación en Enfermería
4.
PLoS One ; 19(7): e0306782, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39046926

RESUMEN

Transit deserts refer to regions with a gap in transit services, with the demand for transit exceeding the supply. This study goes beyond merely identifying transit deserts to suggest actionable solutions. Using a multi-class supervised machine learning framework, we analyzed factors leading to transit deserts, distinguishing demand by gender. Our focus was on peak-time periods. After assessing the Support Vector Machine, Decision Tree, Random Forest, and K-nearest Neighbor, we settled on the Random Forest method, supported by Diverse Counterfactual Explanation and SHapley Additive Explanation in our analysis. The ranking of feature importance in the trained Random Forest model revealed that factors such as density, design, distance to transit, diversity in the built environment, and sociodemographic characteristics significantly contribute to the classification of transit deserts. Diverse Counterfactual Explanation suggested that a reduction in population density and an increase in the proportion of green open spaces would likely facilitate the transformation of transit deserts into transit oases. SHapley Additive Explanation highlighted the differential impact of various features on each identified transit desert. Our analysis results indicate that identifying transit deserts can vary depending on whether the data is aggregated or separated by demographics. We found areas that have unique transit needs based on gender. The disparity in transit services was particularly pronounced for women. Our model pinpointed the core elements that define a transit desert. Broadly, to address transit deserts, strategies should prioritize the needs of disadvantaged groups and enhance the design and accessibility of transit in the built environment. Our research extends existing analyses of transit deserts by leveraging machine learning to develop a predictive model. We developed a machine learning-powered interactive dashboard. Integrating participatory planning approaches with the development of an interactive interface could enhance ongoing community engagement. Planning practices can evolve with AI in the loop.


Asunto(s)
Predicción , Humanos , Predicción/métodos , Transportes , Masculino , Femenino , Máquina de Vectores de Soporte , Aprendizaje Automático Supervisado , Árboles de Decisión , Entorno Construido , Modelos Teóricos , Aprendizaje Automático
5.
Fluids Barriers CNS ; 21(1): 56, 2024 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-38997764

RESUMEN

BACKGROUND: The cerebrospinal fluid (CSF), primarily generated by the choroid plexus (ChP), is the major carrier of the glymphatic system. The alternations of CSF production and the ChP can be associated with the Alzheimer's disease (AD). The present work investigated the roles of the ChP in the AD based on a proposed ChP image segmentation pipeline. METHODS: A human-in-the-loop ChP image segmentation pipeline was implemented with intermediate and active learning datasets. The performance of the proposed pipeline was evaluated on manual contours by five radiologists, compared to the FreeSurfer and FastSurfer toolboxes. The ChP volume and blood flow were investigated among AD groups. The correlations between the ChP volume and AD CSF biomarkers including phosphorylated tau (p-tau), total tau (t-tau), amyloid-ß42 (Aß42), and amyloid-ß40 (Aß40) was investigated using three models (univariate, multiple variables, and stepwise regression) on two datasets with 806 and 320 subjects. RESULTS: The proposed ChP segmentation pipeline achieved superior performance with a Dice coefficient of 0.620 on the test dataset, compared to the FreeSurfer (0.342) and FastSurfer (0.371). Significantly larger volumes (p < 0.001) and higher perfusion (p = 0.032) at the ChP were found in AD compared to CN groups. Significant correlations were found between the tau and the relative ChP volume (the ChP volume and ChP/parenchyma ratio) in each patient groups and in the univariate regression analysis (p < 0.001), the multiple regression model (p < 0.05 except for the t-tau in the LMCI), and in the step-wise regression model (p < 0.021). In addition, the correlation coefficients changed from - 0.32 to - 0.21 along with the AD progression in the multiple regression model. In contrast, the Aß42 and Aß40 shows consistent and significant associations with the lateral ventricle related measures in the step-wise regression model (p < 0.027). CONCLUSIONS: The proposed pipeline provided accurate ChP segmentation which revealed the associations between the ChP and tau level in the AD. The proposed pipeline is available on GitHub ( https://github.com/princeleeee/ChP-Seg ).


Asunto(s)
Enfermedad de Alzheimer , Péptidos beta-Amiloides , Plexo Coroideo , Proteínas tau , Enfermedad de Alzheimer/diagnóstico por imagen , Enfermedad de Alzheimer/metabolismo , Enfermedad de Alzheimer/líquido cefalorraquídeo , Humanos , Proteínas tau/líquido cefalorraquídeo , Proteínas tau/metabolismo , Plexo Coroideo/diagnóstico por imagen , Plexo Coroideo/metabolismo , Péptidos beta-Amiloides/líquido cefalorraquídeo , Péptidos beta-Amiloides/metabolismo , Masculino , Femenino , Anciano , Aprendizaje Automático Supervisado , Biomarcadores/líquido cefalorraquídeo , Biomarcadores/metabolismo , Imagen por Resonancia Magnética/métodos , Procesamiento de Imagen Asistido por Computador/métodos , Persona de Mediana Edad , Anciano de 80 o más Años
6.
Neurology ; 103(3): e209528, 2024 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-39008785

RESUMEN

BACKGROUND AND OBJECTIVES: Neuroimaging studies in patients with temporal lobe epilepsy (TLE) show widespread brain network alterations beyond the mesiotemporal lobe. Despite the critical role of the cerebrovascular system in maintaining whole-brain structure and function, changes in cerebral blood flow (CBF) remain incompletely understood in the disease. Here, we studied whole-brain perfusion and vascular network alterations in TLE and assessed its associations with gray and white matter compromises and various clinical variables. METHODS: We included individuals with and without pharmaco-resistant TLE who underwent multimodal 3T MRI, including arterial spin labelling, structural, and diffusion-weighted imaging. Using surface-based MRI mapping, we generated individualized cortico-subcortical profiles of perfusion, morphology, and microstructure. Linear models compared regional CBF in patients with controls and related alterations to morphological and microstructural metrics. We further probed interregional vascular networks in TLE, using graph theoretical CBF covariance analysis. The effects of disease duration were explored to better understand the progressive changes in perfusion. We assessed the utility of perfusion in separating patients with TLE from controls using supervised machine learning. RESULTS: Compared with control participants (n = 38; mean ± SD age 34.8 ± 9.3 years; 20 females), patients with TLE (n = 24; mean ± SD age 35.8 ± 10.6 years; 12 females) showed widespread CBF reductions predominantly in fronto-temporal regions (Cohen d -0.69, 95% CI -1.21 to -0.16), consistent in a subgroup of patients who remained seizure-free after surgical resection of the seizure focus. Parallel structural profiling and network-based models showed that cerebral hypoperfusion may be partially constrained by gray and white matter changes (8.11% reduction in Cohen d) and topologically segregated from whole-brain perfusion networks (area under the curve -0.17, p < 0.05). Negative effects of progressive disease duration further targeted regional CBF profiles in patients (r = -0.54, 95% CI -0.77 to -0.16). Perfusion-derived classifiers discriminated patients from controls with high accuracy (71% [70%-82%]). Findings were robust when controlling for several methodological confounds. DISCUSSION: Our multimodal findings provide insights into vascular contributions to TLE pathophysiology affecting and extending beyond mesiotemporal structures and highlight their clinical potential in epilepsy diagnosis. As our work was cross-sectional and based on a single site, it motivates future longitudinal studies to confirm progressive effects, ideally in a multicentric setting.


Asunto(s)
Circulación Cerebrovascular , Epilepsia del Lóbulo Temporal , Sustancia Gris , Sustancia Blanca , Humanos , Epilepsia del Lóbulo Temporal/fisiopatología , Epilepsia del Lóbulo Temporal/diagnóstico por imagen , Femenino , Masculino , Sustancia Blanca/diagnóstico por imagen , Sustancia Blanca/patología , Sustancia Blanca/irrigación sanguínea , Adulto , Circulación Cerebrovascular/fisiología , Sustancia Gris/diagnóstico por imagen , Sustancia Gris/irrigación sanguínea , Sustancia Gris/patología , Sustancia Gris/fisiopatología , Imagen por Resonancia Magnética , Persona de Mediana Edad , Imagen de Difusión por Resonancia Magnética , Aprendizaje Automático Supervisado , Adulto Joven , Epilepsia Refractaria/fisiopatología , Epilepsia Refractaria/diagnóstico por imagen , Epilepsia Refractaria/patología
7.
Curr Med Imaging ; 20(1): e15734056313837, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39039669

RESUMEN

INTRODUCTION: This study introduces SkinLiTE, a lightweight supervised contrastive learning model tailored to enhance the detection and typification of skin lesions in dermoscopic images. The core of SkinLiTE lies in its unique integration of supervised and contrastive learning approaches, which leverages labeled data to learn generalizable representations. This approach is particularly adept at handling the challenge of complexities and imbalances inherent in skin lesion datasets. METHODS: The methodology encompasses a two-phase learning process. In the first phase, SkinLiTE utilizes an encoder network and a projection head to transform and project dermoscopic images into a feature space where contrastive loss is applied, focusing on minimizing intra-class variations while maximizing inter-class differences. The second phase freezes the encoder's weights, leveraging the learned representations for classification through a series of dense and dropout layers. The model was evaluated using three datasets from Skin Cancer ISIC 2019-2020, covering a wide range of skin conditions. RESULTS: SkinLiTE demonstrated superior performance across various metrics, including accuracy, AUC, and F1 scores, particularly when compared with traditional supervised learning models. Notably, SkinLiTE achieved an accuracy of 0.9087 using AugMix augmentation for binary classification of skin lesions. It also showed comparable results with the state-of-the-art approaches of ISIC challenge without relying on external data, underscoring its efficacy and efficiency. The results highlight the potential of SkinLiTE as a significant step forward in the field of dermatological AI, offering a robust, efficient, and accurate tool for skin lesion detection and classification. Its lightweight architecture and ability to handle imbalanced datasets make it particularly suited for integration into Internet of Medical Things environments, paving the way for enhanced remote patient monitoring and diagnostic capabilities. CONCLUSION: This research contributes to the evolving landscape of AI in healthcare, demonstrating the impact of innovative learning methodologies in medical image analysis.


Asunto(s)
Dermoscopía , Neoplasias Cutáneas , Aprendizaje Automático Supervisado , Humanos , Dermoscopía/métodos , Neoplasias Cutáneas/diagnóstico por imagen , Interpretación de Imagen Asistida por Computador/métodos , Piel/diagnóstico por imagen
8.
Radiology ; 312(1): e232085, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-39041937

RESUMEN

Deep learning (DL) is currently the standard artificial intelligence tool for computer-based image analysis in radiology. Traditionally, DL models have been trained with strongly supervised learning methods. These methods depend on reference standard labels, typically applied manually by experts. In contrast, weakly supervised learning is more scalable. Weak supervision comprises situations in which only a portion of the data are labeled (incomplete supervision), labels refer to a whole region or case as opposed to a precisely delineated image region (inexact supervision), or labels contain errors (inaccurate supervision). In many applications, weak labels are sufficient to train useful models. Thus, weakly supervised learning can unlock a large amount of otherwise unusable data for training DL models. One example of this is using large language models to automatically extract weak labels from free-text radiology reports. Here, we outline the key concepts in weakly supervised learning and provide an overview of applications in radiologic image analysis. With more fundamental and clinical translational work, weakly supervised learning could facilitate the uptake of DL in radiology and research workflows by enabling large-scale image analysis and advancing the development of new DL-based biomarkers.


Asunto(s)
Aprendizaje Profundo , Radiología , Humanos , Radiología/educación , Aprendizaje Automático Supervisado , Interpretación de Imagen Asistida por Computador/métodos
9.
PLoS One ; 19(7): e0302563, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38985774

RESUMEN

Research on personal adornments depends on the reliable characterisation of materials to trace provenance and model complex social networks. However, many analytical techniques require the transfer of materials from the museum to the laboratory, involving high insurance costs and limiting the number of items that can be analysed, making the process of empirical data collection a complicated, expensive and time-consuming routine. In this study, we compiled the largest geochemical dataset of Iberian personal adornments (n = 1243 samples) by coupling X-ray fluorescence compositional data with their respective X-ray diffraction mineral labels. This allowed us to develop a machine learning-based framework for the prediction of bead-forming minerals by training and benchmarking 13 of the most widely used supervised algorithms. As a proof of concept, we developed a multiclass model and evaluated its performance on two assemblages from different Portuguese sites with current mineralogical characterisation: Cova das Lapas (n = 15 samples) and Gruta da Marmota (n = 10 samples). Our results showed that decisión-tres based classifiers outperformed other classification logics given the discriminative importance of some chemical elements in determining the mineral phase, which fits particularly well with the decision-making process of this type of model. The comparison of results between the different validation sets and the proof-of-concept has highlighted the risk of using synthetic data to handle imbalance and the main limitation of the framework: its restrictive class system. We conclude that the presented approach can successfully assist in the mineral classification workflow when specific analyses are not available, saving time and allowing a transparent and straightforward assessment of model predictions. Furthermore, we propose a workflow for the interpretation of predictions using the model outputs as compound responses enabling an uncertainty reduction approach currently used by our team. The Python-based framework is packaged in a public repository and includes all the necessary resources for its reusability without the need for any installation.


Asunto(s)
Minerales , Minerales/análisis , Minerales/química , Algoritmos , Portugal , Difracción de Rayos X , Espectrometría por Rayos X/métodos , Humanos , Aprendizaje Automático , Aprendizaje Automático Supervisado
10.
BMC Womens Health ; 24(1): 393, 2024 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-38978015

RESUMEN

BACKGROUND: Cervical cancer (CC) is among the most prevalent cancer types among women with the highest prevalence in low- and middle-income countries (LMICs). It is a curable disease if detected early. Machine learning (ML) techniques can aid in early detection and prediction thus reducing screening and treatment costs. This study focused on women living with HIV (WLHIV) in Uganda. Its aim was to identify the best predictors of CC and the supervised ML model that best predicts CC among WLHIV. METHODS: Secondary data that included 3025 women from three health facilities in central Uganda was used. A multivariate binary logistic regression and recursive feature elimination with random forest (RFERF) were used to identify the best predictors. Five models; logistic regression (LR), random forest (RF), K-Nearest neighbor (KNN), support vector machine (SVM), and multi-layer perceptron (MLP) were applied to identify the out-performer. The confusion matrix and the area under the receiver operating characteristic curve (AUC/ROC) were used to evaluate the models. RESULTS: The results revealed that duration on antiretroviral therapy (ART), WHO clinical stage, TPT status, Viral load status, and family planning were commonly selected by the two techniques and thus highly significant in CC prediction. The RF from the RFERF-selected features outperformed other models with the highest scores of 90% accuracy and 0.901 AUC. CONCLUSION: Early identification of CC and knowledge of the risk factors could help control the disease. The RF outperformed other models applied regardless of the selection technique used. Future research can be expanded to include ART-naïve women in predicting CC.


Asunto(s)
Infecciones por VIH , Neoplasias del Cuello Uterino , Humanos , Femenino , Uganda/epidemiología , Neoplasias del Cuello Uterino/diagnóstico , Infecciones por VIH/tratamiento farmacológico , Adulto , Aprendizaje Automático Supervisado , Persona de Mediana Edad , Lesiones Precancerosas/diagnóstico , Modelos Logísticos , Algoritmos , Máquina de Vectores de Soporte
11.
Nat Commun ; 15(1): 5989, 2024 Jul 16.
Artículo en Inglés | MEDLINE | ID: mdl-39013867

RESUMEN

Single-cell sequencing is a crucial tool for dissecting the cellular intricacies of complex diseases. Its prohibitive cost, however, hampers its application in expansive biomedical studies. Traditional cellular deconvolution approaches can infer cell type proportions from more affordable bulk sequencing data, yet they fall short in providing the detailed resolution required for single-cell-level analyses. To overcome this challenge, we introduce "scSemiProfiler", an innovative computational framework that marries deep generative models with active learning strategies. This method adeptly infers single-cell profiles across large cohorts by fusing bulk sequencing data with targeted single-cell sequencing from a few rigorously chosen representatives. Extensive validation across heterogeneous datasets verifies the precision of our semi-profiling approach, aligning closely with true single-cell profiling data and empowering refined cellular analyses. Originally developed for extensive disease cohorts, "scSemiProfiler" is adaptable for broad applications. It provides a scalable, cost-effective solution for single-cell profiling, facilitating in-depth cellular investigation in various biological domains.


Asunto(s)
Análisis de la Célula Individual , Análisis de la Célula Individual/métodos , Humanos , Aprendizaje Profundo , Biología Computacional/métodos , Perfilación de la Expresión Génica/métodos , Aprendizaje Automático Supervisado
12.
Nat Commun ; 15(1): 5906, 2024 Jul 13.
Artículo en Inglés | MEDLINE | ID: mdl-39003292

RESUMEN

As vast histological archives are digitised, there is a pressing need to be able to associate specific tissue substructures and incident pathology to disease outcomes without arduous annotation. Here, we learn self-supervised representations using a Vision Transformer, trained on 1.7 M histology images across 23 healthy tissues in 838 donors from the Genotype Tissue Expression consortium (GTEx). Using these representations, we can automatically segment tissues into their constituent tissue substructures and pathology proportions across thousands of whole slide images, outperforming other self-supervised methods (43% increase in silhouette score). Additionally, we can detect and quantify histological pathologies present, such as arterial calcification (AUROC = 0.93) and identify missing calcification diagnoses. Finally, to link gene expression to tissue morphology, we introduce RNAPath, a set of models trained on 23 tissue types that can predict and spatially localise individual RNA expression levels directly from H&E histology (mean genes significantly regressed = 5156, FDR 1%). We validate RNAPath spatial predictions with matched ground truth immunohistochemistry for several well characterised control genes, recapitulating their known spatial specificity. Together, these results demonstrate how self-supervised machine learning when applied to vast histological archives allows researchers to answer questions about tissue pathology, its spatial organisation and the interplay between morphological tissue variability and gene expression.


Asunto(s)
Aprendizaje Automático Supervisado , Humanos , ARN/genética , ARN/metabolismo , Perfilación de la Expresión Génica/métodos , Especificidad de Órganos/genética , Procesamiento de Imagen Asistido por Computador/métodos
13.
Sci Rep ; 14(1): 15463, 2024 07 05.
Artículo en Inglés | MEDLINE | ID: mdl-38965254

RESUMEN

Hepatitis C virus (HCV) is a major global health concern, affecting millions of individuals worldwide. While existing literature predominantly focuses on disease classification using clinical data, there exists a critical research gap concerning HCV genotyping based on genomic sequences. Accurate HCV genotyping is essential for patient management and treatment decisions. While the neural models excel at capturing complex patterns, they still face challenges, such as data scarcity, that exist a lot in computational genomics. To overcome this challenges, this paper introduces an advanced deep learning approach for HCV genotyping based on the graphical representation of nucleotide sequences that outperforms classical approaches. Notably, it is effective for both partial and complete HCV genomes and addresses challenges associated with imbalanced datasets. In this work, ten HCV genotypes: 1a, 1b, 2a, 2b, 2c, 3a, 3b, 4, 5, and 6 were used in the analysis. This study utilizes Chaos Game Representation for 2D mapping of genomic sequences, employing self-supervised learning using convolutional autoencoder for deep feature extraction, resulting in an outstanding performance for HCV genotyping compared to various machine learning and deep learning models. This baseline provides a benchmark against which the performance of the proposed approach and other models can be evaluated. The experimental results showcase a remarkable classification accuracy of over 99%, outperforming traditional deep learning models. This performance demonstrates the capability of the proposed model to accurately identify HCV genotypes in both partial and complete sequences and in dealing with data scarcity for certain genotypes. The results of the proposed model are compared to NCBI genotyping tool.


Asunto(s)
Genoma Viral , Genotipo , Técnicas de Genotipaje , Hepacivirus , Hepatitis C , Hepacivirus/genética , Hepacivirus/clasificación , Humanos , Técnicas de Genotipaje/métodos , Hepatitis C/virología , Aprendizaje Automático Supervisado , Aprendizaje Profundo , Biología Computacional/métodos
14.
Indian J Public Health ; 68(2): 291-294, 2024 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-38953820

RESUMEN

The price and safety of finished pharmaceutical preparations are two major concerns while prescribing medicine. In this work, machine learning-based classification models were developed with respect to the quality attributes of 258 samples covering 9 marketed amlodipine (AMLO) formulations. The quantitation of AMLO and its three sulfonate ester genotoxic impurities of besylate counter ion was settled using a validated high-performance liquid chromatography-diode-array detection method. The classification of correlation between dependent and independent variables was exercised using linear discriminant analysis models. The linear dispersion of acceptable quality attributes was significantly different for AMLO besylate formulation with unit price per tablet "<1 Rs." Although the correlations between price and quality are well-understood associations group centroid distance for price group "2-3 Rs." and "1-2 Rs." reveal that acceptable quality dispersion was similar for both groups. Nonetheless, a higher price could allow storage of the finished formulation to be kept on the shelf for a longer period.


Asunto(s)
Amlodipino , Medicamentos Genéricos , Amlodipino/economía , Medicamentos Genéricos/economía , Medicamentos Genéricos/normas , Humanos , Aprendizaje Automático Supervisado , Cromatografía Líquida de Alta Presión
15.
Sci Rep ; 14(1): 17157, 2024 Jul 26.
Artículo en Inglés | MEDLINE | ID: mdl-39060426

RESUMEN

In addition to focal lesions, diffusely abnormal white matter (DAWM) is seen on brain MRI of multiple sclerosis (MS) patients and may represent early or distinct disease processes. The role of MRI-observed DAWM is understudied due to a lack of automated assessment methods. Supervised deep learning (DL) methods are highly capable in this domain, but require large sets of labeled data. To overcome this challenge, a DL-based network (DAWM-Net) was trained using semi-supervised learning on a limited set of labeled data for segmentation of DAWM, focal lesions, and normal-appearing brain tissues on multiparametric MRI. DAWM-Net segmentation performance was compared to a previous intensity thresholding-based method on an independent test set from expert consensus (N = 25). Segmentation overlap by Dice Similarity Coefficient (DSC) and Spearman correlation of DAWM volumes were assessed. DAWM-Net showed DSC > 0.93 for normal-appearing brain tissues and DSC > 0.81 for focal lesions. For DAWM-Net, the DAWM DSC was 0.49 ± 0.12 with a moderate volume correlation (ρ = 0.52, p < 0.01). The previous method showed lower DAWM DSC of 0.26 ± 0.08 and lacked a significant volume correlation (ρ = 0.23, p = 0.27). These results demonstrate the feasibility of DL-based DAWM auto-segmentation with semi-supervised learning. This tool may facilitate future investigation of the role of DAWM in MS.


Asunto(s)
Encéfalo , Aprendizaje Profundo , Imágenes de Resonancia Magnética Multiparamétrica , Esclerosis Múltiple , Sustancia Blanca , Humanos , Sustancia Blanca/diagnóstico por imagen , Sustancia Blanca/patología , Esclerosis Múltiple/diagnóstico por imagen , Esclerosis Múltiple/patología , Masculino , Imágenes de Resonancia Magnética Multiparamétrica/métodos , Femenino , Encéfalo/diagnóstico por imagen , Encéfalo/patología , Adulto , Persona de Mediana Edad , Aprendizaje Automático Supervisado , Imagen por Resonancia Magnética/métodos
16.
Sensors (Basel) ; 24(14)2024 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-39065842

RESUMEN

This paper presents an on-device semi-supervised human activity detection system that can learn and predict human activity patterns in real time. The clinical objective is to monitor and detect the unhealthy sedentary lifestyle of a user. The proposed semi-supervised learning (SSL) framework uses sparsely labelled user activity events acquired from Inertial Measurement Unit sensors installed as wearable devices. The proposed cluster-based learning model in this approach is trained with data from the same target user, thus preserving data privacy while providing personalized activity detection services. Two different cluster labelling strategies, namely, population-based and distance-based strategies, are employed to achieve the desired classification performance. The proposed system is shown to be highly accurate and computationally efficient for different algorithmic parameters, which is relevant in the context of limited computing resources on typical wearable devices. Extensive experimentation and simulation study have been conducted on multi-user human activity data from the public domain in order to analyze the trade-off between classification accuracy and computation complexity of the proposed learning paradigm with different algorithmic hyper-parameters. With 4.17 h of training time for 8000 activity episodes, the proposed SSL approach consumes at most 20 KB of CPU memory space, while providing a maximum accuracy of 90% and 100% classification rates.


Asunto(s)
Algoritmos , Dispositivos Electrónicos Vestibles , Humanos , Monitoreo Fisiológico/métodos , Monitoreo Fisiológico/instrumentación , Privacidad , Aprendizaje Automático Supervisado , Actividades Humanas , Medicina de Precisión/métodos
17.
Sci Rep ; 14(1): 15625, 2024 07 07.
Artículo en Inglés | MEDLINE | ID: mdl-38972881

RESUMEN

Blood cancer has emerged as a growing concern over the past decade, necessitating early diagnosis for timely and effective treatment. The present diagnostic method, which involves a battery of tests and medical experts, is costly and time-consuming. For this reason, it is crucial to establish an automated diagnostic system for accurate predictions. A particular field of focus in medical research is the use of machine learning and leukemia microarray gene data for blood cancer diagnosis. Even with a great deal of research, more improvements are needed to reach the appropriate levels of accuracy and efficacy. This work presents a supervised machine-learning algorithm for blood cancer prediction. This work makes use of the 22,283-gene leukemia microarray gene data. Chi-squared (Chi2) feature selection methods and the synthetic minority oversampling technique (SMOTE)-Tomek resampling is used to overcome issues with imbalanced and high-dimensional datasets. To balance the dataset for each target class, SMOTE-Tomek creates synthetic data, and Chi2 chooses the most important features to train the learning models from 22,283 genes. A novel weighted convolutional neural network (CNN) model is proposed for classification, utilizing the support of three separate CNN models. To determine the importance of the proposed approach, extensive experiments are carried out on the datasets, including a performance comparison with the most advanced techniques. Weighted CNN demonstrates superior performance over other models when coupled with SMOTE-Tomek and Chi2 techniques, achieving a remarkable 99.9% accuracy. Results from k-fold cross-validation further affirm the supremacy of the proposed model.


Asunto(s)
Leucemia , Redes Neurales de la Computación , Humanos , Leucemia/genética , Algoritmos , Neoplasias Hematológicas/genética , Aprendizaje Automático Supervisado , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Aprendizaje Automático , Perfilación de la Expresión Génica/métodos
18.
Comput Methods Programs Biomed ; 254: 108315, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38991373

RESUMEN

BACKGROUND AND OBJECTIVE: Deep learning usually achieves good performance in the supervised way, which requires a large amount of labeled data. However, manual labeling of electrocardiograms (ECGs) is laborious that requires much medical knowledge. Semi-supervised learning (SSL) provides an effective way of leveraging unlabeled data to improve model performance, providing insight for solving this problem. The objective of this study is to improve the performance of cardiovascular disease (CVD) detection by fully utilizing unlabeled ECG. METHODS: A novel SSL algorithm fusing consistency regularization and pseudo-labeling techniques (CPSS) is proposed. CPSS consists of supervised learning and unsupervised learning. For supervised learning, the labeled ECGs are mapped into prediction vectors by the classifier. The cross-entropy loss function is used to optimize the classifier. For unsupervised learning, the unlabeled ECGs are weakly and strongly augmented, and a consistency loss is used to minimize the difference between the classifier's predictions for the two augmentations. Pseudo-labeling techniques include positive pseudo-labeling (PL) and ranking-based negative pseudo-labeling (RNL). PL introduces pseudo-labels for data with high prediction confidence. RNL assigns negative pseudo-labels to the lower-ranked categories in the prediction vectors to leverage data with low prediction confidence. In this study, VGGNet and ResNet are used as classifiers, which are jointly optimized by labeled and unlabeled ECGs. RESULTS: CPSS has been validated on several databases. With the same number of labeled ECGs (10%), it improves the accuracies over pure supervised learning by 13.59%, 4.60%, and 5.38% in the CPSC2018, PTB-XL, and Chapman databases, respectively. CPSS achieves comparable results to the fully supervised method with only 10% of labeled ECGs, which reduces the labeling workload by 90%. In addition, to verify the practicality of CPSS, a cardiovascular disease monitoring system is designed by heterogeneously deploying the trained classifiers on an SoC (system-on-a-chip), which can detect CVD in real time. CONCLUSION: The results of this study indicate that the proposed CPSS can significantly improve the performance of CVD detection using unlabeled ECG, which reduces the burden of ECG labeling in deep learning. In addition, the designed monitoring system makes the proposed CPSS promising for real-world applications.


Asunto(s)
Algoritmos , Enfermedades Cardiovasculares , Aprendizaje Profundo , Electrocardiografía , Aprendizaje Automático Supervisado , Humanos , Electrocardiografía/métodos , Enfermedades Cardiovasculares/diagnóstico , Aprendizaje Automático no Supervisado , Bases de Datos Factuales
19.
Artículo en Inglés | MEDLINE | ID: mdl-39063417

RESUMEN

Raised blood sugar (hyperglycemia) is considered a strong indicator of prediabetes or diabetes mellitus. Diabetes mellitus is one of the most common non-communicable diseases (NCDs) affecting the adult population. Recently, the prevalence of diabetes has been increasing at a faster rate, especially in developing countries. The primary concern associated with diabetes is the potential for serious health complications to occur if it is not diagnosed early. Therefore, timely detection and screening of diabetes is considered a crucial factor in treating and controlling the disease. Population screening for raised blood sugar aims to identify individuals at risk before symptoms appear, enabling timely intervention and potentially improved health outcomes. However, implementing large-scale screening programs can be expensive, requiring testing, follow-up, and management resources, potentially straining healthcare systems. Given the above facts, this paper presents supervised machine-learning models to detect and predict raised blood sugar. The proposed raised blood sugar models utilize diabetes-related risk factors including age, body mass index (BMI), eating habits, physical activity, prevalence of other diseases, and fasting blood sugar obtained from the dataset of the STEPwise approach to NCD risk factor study collected from adults in the Palestinian community. The diabetes risk factor obtained from the STEPS dataset was used as input for building the prediction model that was trained using various types of supervised learning classification algorithms including random forest, decision tree, Adaboost, XGBoost, bagging decision trees, and multi-layer perceptron (MLP). Based on the experimental results, the raised blood sugar models demonstrated optimal performance when implemented with a random forest classifier, yielding an accuracy of 98.4%. Followed by the bagging decision trees, XGBoost, MLP, AdaBoost, and decision tree with an accuracy of 97.4%, 96.4%, 96.3%, 95.2%, and 94.8%, respectively.


Asunto(s)
Glucemia , Aprendizaje Automático Supervisado , Humanos , Glucemia/análisis , Adulto , Persona de Mediana Edad , Diabetes Mellitus/epidemiología , Diabetes Mellitus/sangre , Femenino , Masculino , Factores de Riesgo , Hiperglucemia/sangre , Hiperglucemia/epidemiología , Hiperglucemia/diagnóstico , Anciano
20.
IEEE Trans Image Process ; 33: 4319-4333, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39052457

RESUMEN

Brain region-of-interest (ROI) segmentation with magnetic resonance (MR) images is a basic prerequisite step for brain analysis. The main problem with using deep learning for brain ROI segmentation is the lack of sufficient annotated data. To address this issue, in this paper, we propose a simple multi-atlas supervised contrastive learning framework (MAS-CL) for brain ROI segmentation with MR images in an end-to-end manner. Specifically, our MAS-CL framework mainly consists of two steps, including 1) a multi-atlas supervised contrastive learning method to learn the latent representation using a limited amount of voxel-level labeling brain MR images, and 2) brain ROI segmentation based on the pre-trained backbone using our MSA-CL method. Specifically, different from traditional contrastive learning, in our proposed method, we use multi-atlas supervised information to pre-train the backbone for learning the latent representation of input MR image, i.e., the correlation of each sample pair is defined by using the label maps of input MR image and atlas images. Then, we extend the pre-trained backbone to segment brain ROI with MR images. We perform our proposed MAS-CL framework with five segmentation methods on LONI-LPBA40, IXI, OASIS, ADNI, and CC359 datasets for brain ROI segmentation with MR images. Various experimental results suggested that our proposed MAS-CL framework can significantly improve the segmentation performance on these five datasets.


Asunto(s)
Algoritmos , Encéfalo , Imagen por Resonancia Magnética , Encéfalo/diagnóstico por imagen , Humanos , Imagen por Resonancia Magnética/métodos , Aprendizaje Automático Supervisado , Aprendizaje Profundo , Procesamiento de Imagen Asistido por Computador/métodos , Bases de Datos Factuales
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