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1.
PNAS Nexus ; 3(5): pgae186, 2024 May.
Article in English | MEDLINE | ID: mdl-38818237

ABSTRACT

Numerical solutions to partial differential equations (PDEs) are instrumental for material structural design where extensive data screening is needed. However, traditional numerical methods demand significant computational resources, highlighting the need for innovative optimization algorithms to streamline design exploration. Direct gradient-based optimization algorithms, while effective, rely on design initialization and require complex, problem-specific sensitivity derivations. The advent of machine learning offers a promising alternative to handling large parameter spaces. To further mitigate data dependency, researchers have developed physics-informed neural networks (PINNs) to learn directly from PDEs. However, the intrinsic continuity requirement of PINNs restricts their application in structural mechanics problems, especially for composite materials. Our work addresses this discontinuity issue by substituting the PDE residual with a weak formulation in the physics-informed training process. The proposed approach is exemplified in modeling digital materials, which are mathematical representations of complex composites that possess extreme structural discontinuity. This article also introduces an interactive process that integrates physics-informed loss with design objectives, eliminating the need for pretrained surrogate models or analytical sensitivity derivations. The results demonstrate that our approach can preserve the physical accuracy in data-free material surrogate modeling but also accelerates the direct optimization process without model pretraining.

2.
Sci Rep ; 14(1): 6275, 2024 03 15.
Article in English | MEDLINE | ID: mdl-38491188

ABSTRACT

Hypoxic responses have been implicated in critical pathologies, including inflammation, immunity, and tumorigenesis. Recently, efforts to identify effective natural remedies and health supplements are increasing. Previous studies have reported that the cell lysates and the cell wall-bound lipoteichoic acids of Lactiplantibacillus plantarum K8 (K8) exert anti-inflammatory and immunomodulative effects. However, the effect of K8 on cellular hypoxic responses remains unknown. In this study, we found that K8 lysates had a potent suppressive effect on gene expression under hypoxia. K8 lysates markedly downregulated hypoxia-induced HIF1α accumulation in the human bone marrow and lung cancer cell lines, SH-SY5Y and H460. Consequently, the transcription of known HIF1α target genes, such as p21, GLUT1, and ALDOC, was notably suppressed in the K8 lysate supplement and purified lipoteichoic acids of K8, upon hypoxic induction. Intriguingly, K8 lysates decreased the expression of PHD2 and VHL proteins, which are responsible for HIF1α destabilization under normoxic conditions, suggesting that K8 may regulate HIF1α stability in a non-canonical pathway. Overall, our results suggest that K8 lysates desensitize the cells to hypoxic stresses and suppress HIF1α-mediated hypoxic gene activation.


Subject(s)
Neuroblastoma , Humans , Cell Hypoxia/genetics , Cell Line , Hypoxia/metabolism , Gene Expression , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism
3.
Mater Horiz ; 11(10): 2506-2516, 2024 May 20.
Article in English | MEDLINE | ID: mdl-38477233

ABSTRACT

The utilization of low-density and robust mechanical metamaterials rises as a promising solution for multifunctional electromagnetic wave absorbers due to their structured porous structures, which facilitates impedance matching and structural absorption. However, the various geometrical parameters involved in constructing these metamaterials affect their electromagnetic response, necessitating a comprehensive understanding of underlying absorbing mechanisms. Through experimentally validated numerical analysis, this study delves into the influence of geometrical factors on the electromagnetic response of representative low-density, high strength mechanical metamaterials, namely octet-truss and octet-foam. By juxtaposing electromagnetic response under varying volume fractions, cell lengths, and multilayer configurations of octet-truss and octet-foam, distinct absorption mechanisms emerge as geometrical parameters evolve. These mechanisms encompass diminished reflection owing to porous structures, effective medium approximations within subwavelength limits, and transmission-driven or reflection-driven phenomena originating from the interplay of open- and closed-cell structures. Through analyses on these mechanical metamaterials, we demonstrate the viability of employing them as tunable yet scalable structures that are lightweight, robust, and broadband electromagnetic wave absorption.

4.
Sensors (Basel) ; 24(6)2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38544155

ABSTRACT

As satellite launching increases worldwide, uncertainty quantification for satellite data becomes essential. Misunderstanding satellite data uncertainties can lead to misinterpretations of natural phenomena, emphasizing the importance of validation. In this study, we established a tower-based network equipped with multispectral sensors, SD-500 and SD-600, to validate the satellite-derived NDVI product. Multispectral sensors were installed at eight long-term ecological monitoring sites managed by NIFoS. High correlations were observed between both multispectral sensors and a hyperspectral sensor, with correlations of 0.76 and 0.92, respectively, indicating that the calibration between SD-500 and SD-600 was unnecessary. High correlations, 0.8 to 0.96, between the tower-based NDVI with Sentinel-2 NDVI, were observed at most sites, while lower correlations at Anmyeon-do, Jeju, and Wando highlighting challenges in evergreen forests, likely due to shadows in complex canopy structures. In future research, we aim to analyze the uncertainties of surface reflectance in evergreen forests and develop a biome-specific validation protocol starting from site selection. Especially, the integration of tower, drone, and satellite data is expected to provide insights into the effect of complex forest structures on different spatial scales. This study could offer insights for CAS500-4 and other satellite validations, thereby enhancing our understanding of diverse ecological conditions.

5.
J Cosmet Dermatol ; 23(6): 2240-2248, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38375987

ABSTRACT

BACKGROUND: To increase skin permeability, various transdermal delivery techniques have been developed. However, due to the stratum corneum as a skin barrier, transdermal delivery remains limited. AIMS: In this study, we evaluated efficacy and safety of arc-poration as a novel technique disrupting the stratum corneum. RESULTS: Optical images and histological analysis using reconstituted human skin and porcine skin showed that the treatment of arc-poration created micropores with an average diameter of approximately 100 µm only to the depth of the stratum corneum, but not viable epidermis. In addition, the Franz diffusion cell experiment using reconstituted human skin showed a remarkable increase in permeability following pretreatment with arc-poration. Clinical results clearly demonstrated the enhancement of the skin-improving effect of cosmetics by pretreatment of arc-poration in terms of gloss, hydration, flakiness, texture, tone, tone evenness, and pigmentation of skin, without causing abnormal skin responses. The concentration of ozone and nitrogen oxides generated by arc-poration was below the permissible value for the human body. CONCLUSIONS: Arc-poration can increase skin permeability by creating stratum corneum-specific micropores, which can enhance the skin-improving effect of cosmetics without adverse responses.


Subject(s)
Administration, Cutaneous , Permeability , Skin Absorption , Humans , Swine , Skin Absorption/drug effects , Animals , Adult , Female , Skin/metabolism , Skin/drug effects , Epidermis/metabolism , Epidermis/drug effects , Cosmetics/administration & dosage , Cosmetics/pharmacokinetics , Cosmetics/chemistry , Young Adult
6.
Int J Biol Macromol ; 261(Pt 1): 129597, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38266828

ABSTRACT

Bacterial cellulose (BC) is a remarkable biomacromolecule with potential applications in food, biomedical, and other industries. However, the low economic feasibility of BC production processes hinders its industrialization. In our previous work, we obtained candidate strains with improved BC production through random mutations in Gluconacetobacter. In this study, the molecular identification of LYP25 strain with significantly improved productivity, the development of chestnut pericarp (CP) hydrolysate medium, and its application in BC fermentation were performed for cost-effective BC production process. As a result, the mutant strain was identified as Gluconacetobacter xylinus. The CP hydrolysate (CPH) medium contained 30 g/L glucose with 0.4 g/L acetic acid, whereas other candidates known to inhibit fermentation were not detected. Although acetic acid is generally known as a fermentation inhibitor, it improves the BC production by G. xylinus when present within about 5 g/L in the medium. Fermentation of G. xylinus LYP25 in CPH medium resulted in 17.3 g/L BC, a 33 % improvement in production compared to the control medium, and BC from the experimental and control groups had similar physicochemical properties. Finally, the overall process of BC production from biomass was evaluated and our proposed platform showed the highest yield (17.9 g BC/100 g biomass).


Subject(s)
Acetic Acid , Gluconacetobacter xylinus , Acetic Acid/pharmacology , Gluconacetobacter xylinus/metabolism , Cellulose/chemistry , Biomass , Fermentation
7.
Int J Mol Sci ; 24(15)2023 Aug 02.
Article in English | MEDLINE | ID: mdl-37569741

ABSTRACT

Peanut shells (PSs) generated from agricultural waste contain valuable compounds with bioactive properties such as anti-aging, antimicrobial, and antioxidant properties, making it desirable to recycle them as a sustainable resource. The aim of this study is to design an effective luteolin recovery process as the first step of an integrated biorefinery utilizing PSs as raw material. The major extraction variables and their ranges for luteolin recovery from PSs were determined (0-60 °C, 1-5 h, 0-100% MeOH concentration) and a predictive model was derived through a response surface methodology (RSM). Based on the predictive model, the equation determined for the maximal extraction of luteolin at 1 h was as follows: y = -1.8475x + 159.57, and the significant range of variables was as follows: 33.8 °C ≤ temperature (x) ≤ 48.5 °C and 70.0% ≤ MeOH concentration (y) ≤ 97.5%, respectively. High antioxidant and elastase inhibitory activities of PS extracts were confirmed, and these results support their potential to be used as functional materials. In addition, 39.2% of the solid residue after extraction was carbohydrate, which has potential as a carbon source for fermentation. This study provides a useful direction on an integrated biorefinery approach for sustainable agricultural waste valorization.


Subject(s)
Antioxidants , Arachis , Antioxidants/pharmacology , Luteolin , Temperature , Fermentation
8.
Dev Reprod ; 27(2): 67-75, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37529016

ABSTRACT

Polymeric immunoglobulin receptor (pIgR) mediates the transfer of polymeric immunoglobulin to protect organisms and is one of the most important mucosal effectors. In this study, the developmental stage- and tissue-specific expression of pIgR were observed before virus inoculation in olive flounder. pIgR was gradually expressed until the formation of immune tissue, exhibiting high expression in the late juvenile period; thereafter, pIgR expression gradually decreased and exhibited high expression in the spleen and skin. Moreover, pIgR expression after viral hemorrhagic septicemia virus infection was high in the kidney and spleen tissues at high density and low at low density. The results of this study can provide a basis for future studies on breeding density, virus expression, and immune system studies in fish.

9.
Food Sci Biotechnol ; 32(9): 1257-1268, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37362805

ABSTRACT

The limited yield of Ulmus davidiana var. japonica root bark (URB) extract is considered an economic loss to the food industry. Improving extraction yield and bioactivity through fermentation increase the industrial usage of URB. The study aims to optimize the fermentation with cellulolytic and pectinolytic bacteria and evaluate the bioactivity and anti-Helicobacter pylori activity of the fermented URB extract. URB fermentation with the Bacillus licheniformis FLa3, isolated from salted seafood (Sardinella zunasi), under optimal conditions (37 °C, pH 6, 10% inoculum dose, and 36 h) improved the extraction yield by 36% compared to the control. The antioxidant and antimicrobial activity of the fermented extract were significantly higher than non-fermented extract. High-performance liquid chromatography results confirmed that the fermentation increased the proportion of bioactive components such as catechin (171.7%), epicatechin (144.3%), quercetin (27.3%), and kaempferol (16.7%). The results confirmed that the fermentation increased both the extraction yield and bioactivity.

10.
ACS Appl Mater Interfaces ; 15(21): 26138-26147, 2023 May 31.
Article in English | MEDLINE | ID: mdl-37199778

ABSTRACT

A highly sensitive and flexible gas sensor that can detect a wide range of chemicals is crucial for wearable applications. However, conventional single resistance-based flexible sensors face challenges in maintaining chemical sensitivity under mechanical stress and can be affected by interfering gases. This study presents a versatile approach for fabricating a micropyramidal flexible ion gel sensor, which accomplishes sub-ppm sensitivity (<80 ppb) at room temperature and discrimination capability between various analytes, including toluene, isobutylene, ammonia, ethanol, and humidity. The discrimination accuracy of our flexible sensor is as high as 95.86%, enhanced by using machine learning-based algorithms. Moreover, its sensing capability remains stable with only a 2.09% change from the flat state to a 6.5 mm bending radius, further amplifying its universal usage for wearable chemical sensing. Therefore, we envision that a micropyramidal flexible ion gel sensor platform assisted by machine learning-based algorithms will provide a new strategy toward next-generation wearable sensing technology.

11.
J Hazard Mater ; 457: 131712, 2023 09 05.
Article in English | MEDLINE | ID: mdl-37257376

ABSTRACT

The evaluation of leachate leakage at livestock mortality burial sites is challenging, particularly when groundwater is previously contaminated by agro-livestock farming. Supervised machine learning was applied to discriminate the impacts of carcass leachate from pervasive groundwater contamination in the following order: data labeling, feature selection, synthetic data generation, and classification. Physicochemical data of 359 water samples were collected from burial pits (LC), monitoring wells near pits (MW), pre-existing shallow household wells (HW), and background wells with pervasive contamination (BG). A linear classification model was built using two representative groups (LC and BG) affected by different pollution sources as labeled data. A classifier was then applied to assess the impact of leachate leakage in MW and HW. As a result, leachate impacts were observed in 40% of MW samples, which indicates improper construction and management of some burial pits. Leachate impacts were also detected in six HW samples, up to 120 m downgradient, within one year. The quantitative decision-making tool to diagnose groundwater contamination with leachate leakage can contribute to ensuring timely responses to leakage. The proposed machine learning approach can also be used to improve the environmental impact assessment of water pollution by improper disposal of organic waste.


Subject(s)
Groundwater , Water Pollutants, Chemical , Animals , Environmental Monitoring , Livestock , Farms , Water Pollutants, Chemical/analysis , Burial , Supervised Machine Learning
13.
Int J Biol Macromol ; 232: 123230, 2023 Mar 31.
Article in English | MEDLINE | ID: mdl-36641021

ABSTRACT

Bacterial cellulose (BC), a natural polymer synthesized by bacteria, has received considerable attention owing to its impressive physicomechanical properties. However, the low productivity of BC-producing strains poses a challenge to industrializing this material and making it economically viable. In the present study, UV-induced random mutagenesis of Gluconacetobacter xylinus ATCC 53524 was performed to improve BC production. Sixty mutants were obtained from the following mutagenesis procedure: the correlation between UVC fluence and cell death was investigated, and a limited viability condition was determined as a UVC dose to kill 99.99 %. Compared to the control strain, BC production by the mutant strains LYP25 and LYP23 improved 46.4 % and 44.9 %, respectively. Fermentation profiling using the selected strains showed that LYP25 was superior in glucose consumption and BC production, 13.8 % and 41.0 %, respectively, compared to the control strain. Finally, the physicochemical properties of LYP25-derived BC were similar to those of the control strain; thus, the mutant strain is expected to be a promising producer of BC in the bio-industry based on improved productivity.


Subject(s)
Gluconacetobacter xylinus , Gluconacetobacter , Gluconacetobacter/genetics , Cellulose/chemistry , Fermentation , Gluconacetobacter xylinus/genetics , Gluconacetobacter xylinus/metabolism , Glucose/metabolism
14.
Biochem Biophys Res Commun ; 634: 108-113, 2022 12 17.
Article in English | MEDLINE | ID: mdl-36242916

ABSTRACT

In this study, the levels of plasma estradiol-17ß (E2) in farmed Anguilla japonica were measured to determine their sex. The analyses were performed for two different size groups (large group, Total length (TL): 61-69 cm; small group, TL: 53-60 cm). The anatomical and histological observations showed that the large group consisted of 29% males and 71% females; the small group, 54% males and 45% females. The gonad histology showed that in the large group, 88% of the eels had immature gonads with ongoing sexual differentiation, 12% were mature with completed sexual differentiation. In the small group, 87% of the eels had immature gonads. The plasma E2 hormone levels were higher in the females of both sizes. In the large group, the average plasma E2 in females was 415 pg/ml, which was significantly higher than the average of 109 pg/ml in males (P < 0.05). In the small group, the average plasma E2 hormone level was 618 pg/ml, which was much higher than the average of 108 pg/ml in males. Quantitative real-time PCR showed that zygote arrest 1 (zar 1) and zona pellucida glycoprotein 3 (zp3) were more highly expressed in females than male. In the H-E staining, an eel in the oil droplet containing ovary stage had a high level of plasma E2 (1500 pg/ml), while an eel with testis in the spermatocyte stage had a low (60 pg/ml). E2 is a potentially useful tool and could play an important role in sex determination in broodstocks.


Subject(s)
Anguilla , Animals , Female , Male , Estradiol , Gonads , Ovary , Testis
15.
J Microbiol Biotechnol ; 32(11): 1479-1484, 2022 Nov 28.
Article in English | MEDLINE | ID: mdl-36310363

ABSTRACT

Bacterial cellulose (BC) is gaining attention as a carbon-neutral alternative to plant cellulose, and as a means to prevent deforestation and achieve a carbon-neutral society. However, the high cost of fermentation media for BC production is a barrier to its industrialization. In this study, chestnut shell (CS) hydrolysates were used as a carbon source for the BC-producing bacteria strain, Gluconacetobacter xylinus ATCC 53524. To evaluate the suitability of the CS hydrolysates, major inhibitors in the hydrolysates were analyzed, and BC production was profiled during fermentation. CS hydrolysates (40 g glucose/l) contained 1.9 g/l acetic acid when applied directly to the main medium. As a result, the BC concentration at 96 h using the control group and CS hydrolysates was 12.5 g/l and 16.7 g/l, respectively (1.3-fold improved). In addition, the surface morphology of BC derived from CS hydrolysates revealed more densely packed nanofibrils than the control group. In the microbial BC production using CS, the hydrolysate had no inhibitory effect during fermentation, suggesting it is a suitable feedstock for a sustainable and eco-friendly biorefinery. To the best of our knowledge, this is the first study to valorize CS by utilizing it in BC production.


Subject(s)
Gluconacetobacter xylinus , Gluconacetobacter xylinus/metabolism , Cellulose/metabolism , Fermentation , Carbon , Glucose/pharmacology
16.
Fish Shellfish Immunol ; 126: 251-262, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35577319

ABSTRACT

Septin is an evolutionarily conserved family of GTP-binding proteins. Septins are known to be involved in a variety of cellular processes, including cell division, chromosome separation, cell polarity, motility, membrane dynamics, exocytosis, apoptosis, phagocytosis, DNA damage responses, and other immune responses. In this study, the sequences of the septin gene family of starry flounder were obtained using NGS sequencing, and the integrity of the sequences was verified through cloning and sequencing. At first, the amino acid sequence was annotated using the cDNA sequence, and then, the gene sequence was verified through multiple sequence alignment and phylogenetic analyses using the related conserved sequences. The septin gene family was classified into three subgroups based on the phylogenetic analysis. High conservation within the domain and homology between the genes reported in different species were confirmed. The expression level of septin gene family mRNA in each tissue of healthy starry flounder was evaluated to confirm the tissue- and gene-specific expression levels. Additionally, as a result of the analysis of mRNA expression after simulated pathogen infection, significant expression changes and characteristics were confirmed upon infection with bacteria (Streptococcus parauberis PH0710) and virus (VHSV). Based on the current results and that of previous studies, to confirm the immunological function, Septin 2, 3, and 8 were produced as recombinant proteins based on the amino acid sequences, and their role in phagocytosis was further investigated. The results of this study indicate that septin gene family plays a complex and crucial role in the host immune response to pathogens of starry flounder.


Subject(s)
Flounder , Animals , Flounder/genetics , Phylogeny , RNA, Messenger , Septins/genetics , Sequence Alignment
17.
Environ Res ; 208: 112710, 2022 05 15.
Article in English | MEDLINE | ID: mdl-35026183

ABSTRACT

Biofuel policies are currently being implemented globally to reduce greenhouse gas emissions. The recent European regulation, Renewable Energy Directive (RED) II, states that renewable resources should be used as raw materials. In this study, chestnut shell (CNS), a food processing residue, was utilized as a feedstock for bioethanol production. Statistical optimization was performed to improve biomass-to-glucose conversion (BtG) from the CNS. In order to design an energy-efficient process, the pretreatment was fixed at room temperature in the numerical optimization. The optimal conditions derived from the predicted model are as follows: temperature of 25 °C, reaction time of 2.8 h, and NaOH concentration of 1.9% (w/w). Under optimal conditions, both predicted and experimental BtG were 31.0%, while BtG was approximately 3.3-fold improved compared to the control group (without pretreatment). The recovered glucose was utilized for bioethanol fermentation by Saccharomyces cerevisiae K35 and the ethanol yield was achieved to be 98%. Finally, according to the mass balance based on 1000 g CNS, glucose of 310 g can be recovered by the pretreatment; the bioethanol production was approximately 155 g. This strategy suggests a direction to utilize CNS as a potential feedstock for biorefinery through the design of an economical and energy-efficient pretreatment process by lowering the reaction temperature to room temperature.


Subject(s)
Biofuels , Glucose , Biomass , Fermentation , Hydrolysis , Sodium Hydroxide , Temperature
18.
Clin Exp Pediatr ; 65(2): 81-82, 2022 Feb.
Article in English | MEDLINE | ID: mdl-34990541
19.
Eur Phys J E Soft Matter ; 45(1): 3, 2022 Jan 13.
Article in English | MEDLINE | ID: mdl-35024982

ABSTRACT

In bistable actuators and other engineered devices, a homogeneous stimulus (e.g., mechanical, chemical, thermal, or magnetic) is often applied to an entire shell to initiate a snap-through instability. In this work, we demonstrate that restricting the active area to the shell boundary allows for a large reduction in its size, thereby decreasing the energy input required to actuate the shell. To do so, we combine theory with 1D finite element simulations of spherical caps with a non-homogeneous distribution of stimulus-responsive material. We rely on the effective curvature stimulus, i.e., the natural curvature induced by the non-mechanical stimulus, which ensures that our results are entirely stimulus-agnostic. To validate our numerics and demonstrate this generality, we also perform two sets of experiments, wherein we use residual swelling of bilayer silicone elastomers-a process that mimics differential growth-as well as a magneto-elastomer to induce curvatures that cause snap-through. Our results elucidate the underlying mechanics, offering an intuitive route to optimal design for efficient snap-through.


Subject(s)
Elastomers
20.
J Cerebrovasc Endovasc Neurosurg ; 24(1): 16-23, 2022 Mar.
Article in English | MEDLINE | ID: mdl-34674512

ABSTRACT

OBJECTIVE: Despite the usefulness of pterional craniotomy (PC), its cosmetic outcome is questionable. Electrocautery (EC) causes injuries to adjacent structures, and it could be a factor that affects the cosmetic outcome. Evaluation of cosmetic outcome is difficult because it is often determined by patient's subjective criteria. The objective of this study is to compare the cosmetic outcome after EC versus non-electrocautery (NEC) dissection of the temporalis muscle for PC by analyzing long-term follow-up data determined from both physician and patient's aspects. METHODS: Patients at follow-ups between January 2014 and April 2021 after PCs were enrolled. The keyhole (KH) site, the inferior margin of the temporal line of the frontal bone (ITL), the mid-temporal (mid-T) area, and the posterior incision line (PIL) were inspected by a physician to check the presence of depressions. Patient's cosmetic satisfaction was categorized into satisfactory, intermediate, or unsatisfactory by a survey. The presence of osteolysis was checked from the radiological images. Patients were classified into two groups; one with EC dissection and another with NEC retrograde dissection using a double-ended dissector. RESULTS: The incidences of depression at the mid-T area and osteolysis were higher in the EC group (p=0.001, p<0.001). The percentage of satisfactory cosmetic outcome was lower in the EC group (p=0.002). The presences of depression at the mid-T area and osteolysis were related with lower rate of satisfactory outcomes (p<0.001, p<0.001). Conclusions: NEC dissection causes less destruction to adjacent structures and brings better cosmetic outcome after PC.

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