Segmentation of brain tumour in 3D Intraoperative Ultrasound imaging.

BACKGROUND: Intraoperative ultrasound (iUS), using a navigation system and preoperative magnetic resonance imaging (pMRI), supports the surgeon intraoperatively in identifying tumour margins. Therefore, visual tumour enhancement can be supported by efficient segmentation methods. METHODS: A semi-automatic and two registration-based segmentation methods are evaluated to extract brain tumours from 3D-iUS data. The registration-based methods estimated the brain deformation after craniotomy based on pMRI and 3D-iUS data. Both approaches use the normalised gradient field and linear correlation of linear combinations metrics. Proposed methods were evaluated on 66 B-mode and contrast-mode 3D-iUS data with metastasis and glioblastoma. RESULTS: The semi-automatic segmentation achieved superior results with dice similarity index (DSI) values between [85.34, 86.79]% and contour mean distance values between [1.05, 1.11] mm for both modalities and tumour classes. CONCLUSIONS: Better segmentation results were obtained for metastasis detection than glioblastoma, preferring 3D-intraoperative B-mode over 3D-intraoperative contrast-mode.

Patient-specific model-based segmentation of brain tumors in 3D intraoperative ultrasound images.

PURPOSE: Intraoperative ultrasound (iUS) imaging is commonly used to support brain tumor operation. The tumor segmentation in the iUS images is a difficult task and still under improvement because of the low signal-to-noise ratio. The success of automatic methods is also limited due to the high noise sensibility. Therefore, an alternative brain tumor segmentation method in 3D-iUS data using a tumor model obtained from magnetic resonance (MR) data for local MR-iUS registration is presented in this paper. The aim is to enhance the visualization of the brain tumor contours in iUS. METHODS: A multistep approach is proposed. First, a region of interest (ROI) based on the specific patient tumor model is defined. Second, hyperechogenic structures, mainly tumor tissues, are extracted from the ROI of both modalities by using automatic thresholding techniques. Third, the registration is performed over the extracted binary sub-volumes using a similarity measure based on gradient values, and rigid and affine transformations. Finally, the tumor model is aligned with the 3D-iUS data, and its contours are represented. RESULTS: Experiments were successfully conducted on a dataset of 33 patients. The method was evaluated by comparing the tumor segmentation with expert manual delineations using two binary metrics: contour mean distance and Dice index. The proposed segmentation method using local and binary registration was compared with two grayscale-based approaches. The outcomes showed that our approach reached better results in terms of computational time and accuracy than the comparative methods. CONCLUSION: The proposed approach requires limited interaction and reduced computation time, making it relevant for intraoperative use. Experimental results and evaluations were performed offline. The developed tool could be useful for brain tumor resection supporting neurosurgeons to improve tumor border visualization in the iUS volumes.

Vascular Structure Identification in Intraoperative 3D Contrast-Enhanced Ultrasound Data.

In this paper, a method of vascular structure identification in intraoperative 3D Contrast-Enhanced Ultrasound (CEUS) data is presented. Ultrasound imaging is commonly used in brain tumor surgery to investigate in real time the current status of cerebral structures. The use of an ultrasound contrast agent enables to highlight tumor tissue, but also surrounding blood vessels. However, these structures can be used as landmarks to estimate and correct the brain shift. This work proposes an alternative method for extracting small vascular segments close to the tumor as landmark. The patient image dataset involved in brain tumor operations includes preoperative contrast T1MR (cT1MR) data and 3D intraoperative contrast enhanced ultrasound data acquired before (3D-iCEUS(start) and after (3D-iCEUS(end) tumor resection. Based on rigid registration techniques, a preselected vascular segment in cT1MR is searched in 3D-iCEUS(start) and 3D-iCEUS(end) data. The method was validated by using three similarity measures (Normalized Gradient Field, Normalized Mutual Information and Normalized Cross Correlation). Tests were performed on data obtained from ten patients overcoming a brain tumor operation and it succeeded in nine cases. Despite the small size of the vascular structures, the artifacts in the ultrasound images and the brain tissue deformations, blood vessels were successfully identified.