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1.
Front Microbiol ; 15: 1342098, 2024.
Article in English | MEDLINE | ID: mdl-38633706

ABSTRACT

A novel Gram-negative, obligate anaerobe, non-motile, flagella-lacking, catalase- and oxidase-negative, coccobacilli-shaped bacterial strain designated AGMB02718T was isolated from swine feces. The 16S rRNA gene analysis indicated that strain AGMB02718T belonged to the genus Mesosutterella with the highest similarity to M. multiformis 4NBBH2T (= DSM 106860T) (sequence similarity of 96.2%), forming a distinct phylogenetic lineage. Its growth occurred at 25-45°C (optimal 37°C) and in 0.5-1% NaCl (optimal 0.5%). Strain AGMB02718T was asaccharolytic and contained menaquinone 6 (MK-6) and methylmenaquinone 6 (MMK-6) as the predominant respiratory quinones. The major cellular fatty acids in the isolate were C18:1ω9c and C16:0. Based on the whole-genome sequencing analysis, strain AGMB02718T had a 2,606,253 bp circular chromosome with a G + C content of 62.2%. The average nucleotide identity value between strain AGMB02718T and M. multiformis 4NBBH2T was 72.1%, while the digital DNA-DNA hybridization value was 20.9%. Interestingly, genome analysis suggested that strain AGMB02718T possessed a low-toxicity lipopolysaccharide (LPS) because the genome of the isolate does not include lpxJ and lpxM genes for Kdo2-Lipid A (KLA) assembly, which confers high toxicity to LPS. Moreover, in vitro macrophage stimulation assay confirmed that AGMB02718T produced LPS with low toxicity. Because the low-toxicity LPS produced by the Sutterellaceae family is involved in regulating host immunity and low-toxicity LPS-producing strains can help maintain host immune homeostasis, we evaluated the anti-inflammatory activity of strain AGMB02718T against inflammatory bowel disease (IBD). As a result, strain AGMB02718T was able to prevent the inflammatory response in a dextran sulfate sodium (DSS)-induced colitis model. Therefore, this strain represents a novel species of Mesosutterella that has a protective effect against DSS-induced colitis, and the proposed name is Mesosutterella faecium sp. nov. The type strain is AGMB02718T (=GDMCC 1.2717T = KCTC 25541T).

2.
Arch Microbiol ; 206(1): 19, 2023 Dec 12.
Article in English | MEDLINE | ID: mdl-38086977

ABSTRACT

Obesity is a global health threat that causes various complications such as type 2 diabetes and nonalcoholic fatty liver disease. Gut microbiota is closely related to obesity. In particular, a higher Firmicutes to Bacteroidetes ratio has been reported as a biomarker of obesity, suggesting that the phylum Bacteroidetes may play a role in inhibiting obesity. Indeed, the genus Bacteroides was enriched in the healthy subjects based on metagenome analysis. In this study, we determined the effects of Bacteroides stercoris KGMB02265, a species belonging to the phylum Bacteroidetes, on obesity both in vitro and in vivo. The cell-free supernatant of B. stercoris KGMB02265 inhibited lipid accumulation in 3T3-L1 preadipocytes, in which the expression of adipogenic marker genes was repressed. In vivo study showed that the oral administration of B. stercoris KGMB02265 substantially reduced body weight and fat weight in high-fat diet induced obesity in mice. Furthermore, obese mice orally administered with B. stercoris KGMB02265 restored glucose sensitivity and reduced leptin and triglyceride levels. Taken together, our study reveals that B. stercoris KGMB02265 has anti-obesity activity and suggests that it may be a promising candidate for treating obesity.


Subject(s)
Diabetes Mellitus, Type 2 , Gastrointestinal Microbiome , Humans , Mice , Animals , Diabetes Mellitus, Type 2/complications , Obesity , Bacteroides/genetics , Mice, Inbred C57BL
3.
Sci Rep ; 12(1): 22618, 2022 12 30.
Article in English | MEDLINE | ID: mdl-36585442

ABSTRACT

Interspecific hybridization occurs among birds, and closely related sister taxa tend to hybridize at a high rate. Genomic hybridization markers are useful for understanding the patterns and processes of hybridization and for conserving endangered species in captivity and the wild. In this study, we developed genomic hybridization markers for the F1 progeny of the sister taxa feral pigeons (Columba livia var. domestica) and endangered hill pigeons (Columba rupestris) (family Columbidae). Using whole-genome re-sequencing data, we performed genome-wide analysis for insertion/deletion (InDel) polymorphisms and validated using primers. We conducted polymerase chain reaction (PCR) and agarose gel electrophoresis to identify species-specific InDels. We produced eight F1 hybrids of hill and feral pigeons, and their samples were tested by re-performing analyses and sequencing using 11 species-specific InDel polymorphisms. Eight InDel markers simultaneously amplified two DNA fragments from all F1 hybrids, and there was no abnormality in the sequencing results. The application of genomic tools to detect hybrids can play a crucial role in the assessment of hybridization frequency in the wild. Moreover, systematic captive propagation efforts with hybrids can help control the population decline of hill pigeons.


Subject(s)
Columbidae , Hybridization, Genetic , Animals , Columbidae/genetics , Whole Genome Sequencing , Polymerase Chain Reaction , Nucleic Acid Hybridization
4.
Korean J Parasitol ; 60(6): 423-427, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36588420

ABSTRACT

The long-tailed goral, Naemorhedus caudatus (Mammalia: Bovidae), is one of the endangered animals in the Republic of Korea (Korea). Sarcoptic mange mites infested in diverse species of mammals, including humans, but no case has been reported in long-tailed gorals. We report 2 cases of mange mite, Sarcoptes scabiei, infestation in long-tailed gorals. Mange mites were sampled in the skin legions of the 2 long-tailed gorals, which were rescued in 2 different regions, Uljin-gun, Gyeongsangbuk-do and Cheorwon-gun, Gangwon-do, Korea. Our results showed that the ectoparasite was the itch mite that burrowed into skin and caused scabies on the morphological inspection and placed within the phylogenetic relations of the species. The present study confirmed for the first time in Korea that mange mites are pathogenic scabies of long-tailed goral. Closer surveillance of this pathogenic ectoparasite in zoonotic and infectious ecosystems is warranted.


Subject(s)
Sarcoptes scabiei , Scabies , Animals , Humans , Scabies/diagnosis , Scabies/veterinary , Scabies/epidemiology , Ecosystem , Phylogeny , Caudate Nucleus , Republic of Korea , Ruminants
5.
Histol Histopathol ; 36(8): 833-844, 2021 Aug.
Article in English | MEDLINE | ID: mdl-33829420

ABSTRACT

Cells cultured as monolayers proliferate well, but do not sustain their differentiation characteristics. Previous studies have investigated the interactions between cells and growth factors or cytokines by establishing either in vivo or in vitro three-dimensional (3D) cultures. Using porcine uterine epithelial cells and endometrial cells, the current study was designed to develop a 3D uterine culture system and investigate the response to hormone treatment. Formation of the 3D uterine model was similar to that of uterus from the group supplemented with calcium and magnesium, and the addition of these ions altered the spectrum of basement membrane degrading enzyme expression and activity. In particular, the epithelial cell junctions in the 3D model most closely resembled those of an actual uterus when the medium was supplemented with calcium and magnesium; the intercellular basement membrane structure was also tall under these conditions. The study confirmed that Casp-3 expression was lowest in the P4 (progesterone) treatment group, and this hormone was the most potent stimulus for formation of the endometrial cell layer. Therefore, the addition of calcium and magnesium plays an important role in the formation of a 3D uterine model, and the addition of P4 hormone mimics uterine thickening by stimulating growth of the epithelial cell layer.


Subject(s)
Endometrium/cytology , Endometrium/pathology , Estradiol/pharmacology , Progesterone/pharmacology , Stromal Cells/cytology , Animals , Coculture Techniques , Endometrium/metabolism , Female , Matrix Metalloproteinase 2/metabolism , Matrix Metalloproteinase 9/metabolism , Stromal Cells/drug effects , Stromal Cells/metabolism , Swine , Tissue Inhibitor of Metalloproteinase-2/metabolism , Tissue Inhibitor of Metalloproteinase-3/metabolism , Vascular Endothelial Growth Factor A/metabolism
6.
Mitochondrial DNA B Resour ; 5(1): 1071-1072, 2020 Feb 07.
Article in English | MEDLINE | ID: mdl-33366879

ABSTRACT

The complete mitochondrial genome of Climacium dendroides (GenBank accession number MN942036 was 104,860 base pairs in length, containing 40 protein-coding genes, 3 ribosomal RNA (rRNA), and 24 transfer RNA (tRNA). The base composition was 29.6% A, 29.4% T, 21.0% G, and 19.8% C and its G + C content was 41.0%. The mitochondrial structure and gene order was similar to other Bryophytes. Phylogenetic tree based on the combined analysis of 33 protein-coding genes was well congruent with traditional species relationship of the moss order Hypnales.

7.
Biochem Biophys Res Commun ; 478(2): 924-8, 2016 09 16.
Article in English | MEDLINE | ID: mdl-27520375

ABSTRACT

Alpha-synuclein (α-Syn), a small (14 kDa) protein associated with Parkinson's disease, is abundant in human neural tissues. α-Syn plays an important role in maintaining a supply of synaptic vesicles in presynaptic terminals; however, the mechanism by which it performs this function are not well understood. In addition, there is a correlation between α-Syn over-expression and upregulation of an innate immune response. Given the growing body of literature surrounding antimicrobial peptides (AMPs) in the brain, and the similarities between α-Syn and a previously characterized AMP, Amyloid-ß, we set out to investigate if α-Syn shares AMP-like properties. Here we demonstrate that α-Syn exhibits antibacterial activity against Escherichia coli and Staphylococcus aureus. In addition, we demonstrate a role for α-Syn in inhibiting various pathogenic fungal strains such as Aspergillus flavus, Aspergillus fumigatus and Rhizoctonia solani. We also analyzed localizations of recombinant α-Syn protein in E. coli and Candida albicans. These results suggest that in addition to α-Syn's role in neurotransmitter release, it appears to be a natural AMP.


Subject(s)
Anti-Infective Agents/pharmacology , alpha-Synuclein/pharmacology , Antifungal Agents/pharmacology , Escherichia coli/drug effects , Fungi/drug effects , Humans , Microbial Sensitivity Tests , Organic Chemicals/metabolism , Staphylococcus aureus/drug effects
8.
Biotechnol Lett ; 38(5): 847-54, 2016 May.
Article in English | MEDLINE | ID: mdl-26857607

ABSTRACT

OBJECTIVES: To biochemically characterize synthetic peptides to control harmful algal blooms (HABs) that cause red tides in marine water ecosystems. RESULTS: We present an analysis of several short synthetic peptides and their efficacy as algicidal agents. By altering the amino acid composition of the peptides we addressed the mode of algicidal action and determine the optimal balance of cationic and hydrophobic content for killing. In a controlled setting, these synthetic peptides disrupted both plasma and chloroplast membranes of several species known to result in HABs. This disruption was a direct result of the hydrophobic and cationic content of the peptide. Furthermore, by using an anti-HAB bioassay in scallops, we determined that these peptides were algicidal without being cytotoxic to other marine organisms. CONCLUSIONS: These synthetic peptides may prove promising for general marine ecosystem remediation where HABs have become widespread and resulted in serious economic loss.


Subject(s)
Anti-Infective Agents/pharmacology , Dinoflagellida/drug effects , Harmful Algal Bloom/drug effects , Peptides/pharmacology , Stramenopiles/drug effects , Animals , Anti-Infective Agents/chemistry , Biological Assay , Cations/analysis , Cell Membrane/drug effects , Chloroplasts/drug effects , Dinoflagellida/physiology , Hydrophobic and Hydrophilic Interactions , Pectinidae/microbiology , Peptides/chemistry , Peptides/genetics , Stramenopiles/physiology
9.
Biochem Biophys Res Commun ; 463(4): 1225-9, 2015 Aug 07.
Article in English | MEDLINE | ID: mdl-26086110

ABSTRACT

Overexpression of AtNTRC (AtNTRC(OE)) in Arabidopsis thaliana led to a freezing and cold stress tolerance, whereas a knockout mutant (atntrc) showed a stress-sensitive phenotype. Biochemical analyses showed that the recombinant AtNTRC proteins exhibited a cryoprotective activity for malate dehydrogenase and lactic dehydrogenase. Furthermore, conclusive evidence of its interaction with nucleic acids in vitro is provided here on the basis of gel shift and electron microscopy analysis. Recombinant AtNTRC efficiently protected RNA and DNA from RNase A and metal catalyzed oxidation damage, respectively. The C-terminal thioredoxin domain is required for the nucleic acid-protein complex formation. From these results, it can be hypothesized that AtNTRC, which is known to be an electron donor of peroxiredoxin, contributes the stability of macromolecules under cold stress.


Subject(s)
Adaptation, Physiological , Arabidopsis/physiology , Freezing , NADP/metabolism , Thioredoxin-Disulfide Reductase/metabolism , Arabidopsis/enzymology , Nucleic Acids/metabolism , Plants, Genetically Modified , Protein Binding
10.
Biochem Biophys Res Commun ; 432(2): 291-5, 2013 Mar 08.
Article in English | MEDLINE | ID: mdl-23396059

ABSTRACT

Hydrogen peroxide (H(2)O(2)) regulates the structure and function of 2-Cys peroxiredoxins (Prxs). Upon oxidation by excess H(2)O(2), Prxs become overoxidized to a sulfinic acid of its peroxidatic cysteine residue, resulting in a structural change from a small oligomer with peroxidase function to a large oligomer with chaperone function. Then, sulfiredoxin (Srx) reduces the overoxidized Prxs by an ATP-dependent mechanism. Although Srx is known to repair the overoxidized forms of Prx, the role of Srx in the reversal of Prx oligomerization remains to be elucidated. Here we investigated whether Srx1 directly facilitates the dissociation of yeast Prx1 (YPrx1) from a high-molecular-weight (HMW) complex to a low-molecular-weight (LMW) complex in vitro. Srx1 reactivates the YPrx1 peroxidase activity that is inactivated by H(2)O(2), whereas it decreases the chaperone activity enhanced by H(2)O(2). We show that Srx1 dissociates the H(2)O(2)-induced HMW YPrx1 complex, and that the Srx1 Cys84 residue is critical for its dissociation. In contrast to wild-type Srx1, an inactive Srx1 mutant (Srx1-C84S) did not induce the reactivation of inactivated YPrx1 or dissociation of the HMW YPrx1 complex. We revealed that Srx1 interacts directly with YPrx1 in yeast cells using bimolecular fluorescence complementation. Taken together, these findings suggest that Srx1 regulates YPrx1 function and structure in yeast cells through a direct interaction.


Subject(s)
Oxidoreductases Acting on Sulfur Group Donors/metabolism , Peroxidases/metabolism , Peroxiredoxins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Molecular Chaperones/metabolism , Peroxidases/chemistry , Peroxidases/genetics , Protein Conformation , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Water/metabolism
11.
Mol Plant ; 6(2): 323-36, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23024205

ABSTRACT

Genevestigator analysis has indicated heat shock induction of transcripts for NADPH-thioredoxin reductase, type C (NTRC) in the light. Here we show overexpression of NTRC in Arabidopsis (NTRC°(E)) resulting in enhanced tolerance to heat shock, whereas NTRC knockout mutant plants (ntrc1) exhibit a temperature sensitive phenotype. To investigate the underlying mechanism of this phenotype, we analyzed the protein's biochemical properties and protein structure. NTRC assembles into homopolymeric structures of varying complexity with functions as a disulfide reductase, a foldase chaperone, and as a holdase chaperone. The multiple functions of NTRC are closely correlated with protein structure. Complexes of higher molecular weight (HMW) showed stronger activity as a holdase chaperone, while low molecular weight (LMW) species exhibited weaker holdase chaperone activity but stronger disulfide reductase and foldase chaperone activities. Heat shock converted LMW proteins into HMW complexes. Mutations of the two active site Cys residues of NTRC into Ser (C217/454S-NTRC) led to a complete inactivation of its disulfide reductase and foldase chaperone functions, but conferred only a slight decrease in its holdase chaperone function. The overexpression of the mutated C217/454S-NTRC provided Arabidopsis with a similar degree of thermotolerance compared with that of NTRC°(E) plants. However, after prolonged incubation under heat shock, NTRC°(E) plants tolerated the stress to a higher degree than C217/454S-NTRC°(E) plants. The results suggest that the heat shock-mediated holdase chaperone function of NTRC is responsible for the increased thermotolerance of Arabidopsis and the activity is significantly supported by NADPH.


Subject(s)
Arabidopsis/enzymology , Arabidopsis/physiology , Molecular Chaperones/metabolism , Temperature , Thioredoxin-Disulfide Reductase/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , Heat-Shock Response , Molecular Chaperones/chemistry , Molecular Chaperones/genetics , NADP/metabolism , Oxidation-Reduction , Plants, Genetically Modified , Protein Multimerization , Protein Structure, Quaternary , Thioredoxin-Disulfide Reductase/chemistry , Thioredoxin-Disulfide Reductase/genetics
12.
PLoS One ; 7(9): e46279, 2012.
Article in English | MEDLINE | ID: mdl-23029461

ABSTRACT

2-Cys peroxiredoxins (Prxs) play important roles in the protection of chloroplast proteins from oxidative damage. Arabidopsis NADPH-dependent thioredoxin reductase isotype C (AtNTRC) was identified as efficient electron donor for chloroplastic 2-Cys Prx-A. There are three isotypes (A, B, and C) of thioredoxin reductase (TrxR) in Arabidopsis. AtNTRA contains only TrxR domain, but AtNTRC consists of N-terminal TrxR and C-terminal thioredoxin (Trx) domains. AtNTRC has various oligomer structures, and Trx domain is important for chaperone activity. Our previous experimental study has reported that the hybrid protein (AtNTRA-(Trx-D)), which was a fusion of AtNTRA and Trx domain from AtNTRC, has formed variety of structures and shown strong chaperone activity. But, electron transfer mechanism was not detected at all. To find out the reason of this problem with structural basis, we performed two different molecular dynamics (MD) simulations on AtNTRC and AtNTRA-(Trx-D) proteins with same cofactors such as NADPH and flavin adenine dinucleotide (FAD) for 50 ns. Structural difference has found from superimposition of two structures that were taken relatively close to average structure. The main reason that AtNTRA-(Trx-D) cannot transfer the electron from TrxR domain to Trx domain is due to the difference of key catalytic residues in active site. The long distance between TrxR C153 and disulfide bond of Trx C387-C390 has been observed in AtNTRA-(Trx-D) because of following reasons: i) unstable and unfavorable interaction of the linker region, ii) shifted Trx domain, and iii) different or weak interface interaction of Trx domains. This study is one of the good examples for understanding the relationship between structure formation and reaction activity in hybrid protein. In addition, this study would be helpful for further study on the mechanism of electron transfer reaction in NADPH-dependent thioredoxin reductase proteins.


Subject(s)
Arabidopsis Proteins/chemistry , Arabidopsis/enzymology , Electrons , Molecular Dynamics Simulation , Recombinant Fusion Proteins/chemistry , Thioredoxin-Disulfide Reductase/chemistry , Amino Acid Sequence , Arabidopsis/chemistry , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Catalytic Domain , Cysteine/chemistry , Cysteine/metabolism , Electron Transport , Flavin-Adenine Dinucleotide/chemistry , Flavin-Adenine Dinucleotide/metabolism , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Molecular Chaperones/chemistry , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Molecular Sequence Data , NADP/chemistry , NADP/metabolism , Protein Structure, Tertiary , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , Thioredoxin-Disulfide Reductase/genetics , Thioredoxin-Disulfide Reductase/metabolism
13.
Protein Expr Purif ; 86(1): 53-7, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22982229

ABSTRACT

Amyloid-ß peptide 1-42 (Aß(1-42)), the predominant form in senile plaques, plays important roles in the pathogenesis of Alzheimer's disease. Because Aß(1-42) has aggregation-prone nature, it has been difficult to produce in a soluble state in bacterial expression systems. In this study, we modified our expression system to increase the soluble fraction of Aß(1-42) in Escherichia coli (E. coli) cells. The expression level and solubility of recombinant Aß(1-42) induced at the low temperature (16°C) is highly increased compared to that induced at 37°C. To optimize expression temperature, the coding region of Aß(1-42) was constructed in a pCold vector, pCold-TF, which has a hexahistidine-tagged trigger factor (TF). Recombinant Aß(1-42) was expressed primarily as a soluble protein using pCold vector system and purified with a nickel-chelating resin. When the toxic effect of recombinant Aß(1-42) examined on human neuroblastoma SH-SY5Y cells, the purified Aß(1-42) induced cell toxicity on SH-SY5Y cells. In conclusion, the system developed in this study will provide a useful method for the production of aggregation prone-peptide such as Aß(1-42).


Subject(s)
Amyloid beta-Peptides/biosynthesis , Cold Temperature , Genetic Vectors/genetics , Peptide Fragments/biosynthesis , Recombinant Fusion Proteins/biosynthesis , Amino Acid Sequence , Amyloid beta-Peptides/genetics , Cell Line, Tumor , Cell Survival , Chromatography, Affinity/methods , Escherichia coli/genetics , Humans , Neuroblastoma/pathology , Open Reading Frames , Peptide Fragments/genetics , Proteolysis , Recombinant Fusion Proteins/genetics , Solubility , Transformation, Genetic
14.
Biochem Biophys Res Commun ; 408(1): 78-83, 2011 Apr 29.
Article in English | MEDLINE | ID: mdl-21458419

ABSTRACT

Proteomic analysis of a rice callus led to the identification of 10 abscisic acid (ABA)-induced proteins as putative products of the embryo-specific promoter candidates. 5'-flanking sequence of 1 Cys-Prx, a highly-induced protein gene, was cloned and analyzed. The transcription initiation site of 1 Cys-Prx maps 96 nucleotides upstream of the translation initiation codon and a TATA-box and putative seed-specific cis-acting elements, RYE and ABRE, are located 26, 115 and 124 bp upstream of the transcription site, respectively. ß-glucuronidase (GUS) expression driven by the 1 Cys-Prx promoters was strong in the embryo and aleurone layer and the activity reached up to 24.9 ± 3.3 and 40.5 ± 2.1 pmol (4 MU/min/µg protein) in transgenic rice seeds and calluses, respectively. The activity of the 1 Cys-Prx promoters is much higher than that of the previously-identified embryo-specific promoters, and comparable to that of strong endosperm-specific promoters in rice. GUS expression driven by the 1 Cys-Prx promoters has been increased by ABA treatment and rapidly induced by wounding in callus and at the leaf of the transgenic plants, respectively. Furthermore, ectopic expression of the GUS construct in Arabidopsis suggested that the 1 Cys-Prx promoter also has strong activity in seeds of dicot plants.


Subject(s)
Oryza/genetics , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Promoter Regions, Genetic , Seeds/genetics , Abscisic Acid/metabolism , Abscisic Acid/pharmacology , Amino Acid Sequence , Base Sequence , Gene Expression Regulation, Plant , Genes, Reporter , Glucuronidase/genetics , Molecular Sequence Data , Oryza/drug effects , Peptide Chain Initiation, Translational , Plants, Genetically Modified/drug effects , Proteomics
15.
Int J Syst Evol Microbiol ; 61(Pt 11): 2753-2757, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21216922

ABSTRACT

A Gram-negative-staining, rod-shaped bacterium, designated strain SY01(T), was isolated from tidal flat sediment from Sacheon Bay, South Korea. Strain SY01(T) was characterized with respect to its phenotypic and phylogenetic characteristics. The novel strain was spore-forming, motile, catalase-negative and oxidase-positive. Optimal growth of the strain occurred at 30 °C and pH 7.0. The DNA G+C content was 56.1 mol%. The predominant menaquinone was MK-7. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and several unknown lipids were detected in the polar lipid profile. Anteiso-C(15 : 0) (47.2 %), iso-C(15 : 0) (18.9 %) and iso-C(16 : 0) (10.5 %) were the major cellular fatty acids of strain SY01(T). The highest 16S rRNA gene sequence similarities were found with Paenibacillus phyllosphaerae PALXIL04(T) (95.9 %), Paenibacillus tarimensis SA-7-6(T) (94.6 %) and Paenibacillus mendelii C/2(T) (94.4 %). Based on the phylogenetic, chemotaxonomic and physiological characteristics presented in this study, strain SY01(T) represents a novel species of the genus Paenibacillus, for which the name Paenibacillus sacheonensis sp. nov. is proposed. The type strain is SY01(T) ( = DSM 23054(T) = KACC 14895(T)).


Subject(s)
Cellulose/metabolism , Geologic Sediments/microbiology , Paenibacillus/classification , Paenibacillus/isolation & purification , Seawater/microbiology , Xylans/metabolism , Base Composition , DNA, Bacterial/genetics , Fatty Acids/metabolism , Molecular Sequence Data , Paenibacillus/genetics , Paenibacillus/metabolism , Phylogeny , RNA, Ribosomal, 16S/genetics , Republic of Korea
16.
Plant Physiol ; 150(2): 552-61, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19339505

ABSTRACT

A large number of thioredoxins (Trxs), small redox proteins, have been identified from all living organisms. However, many of the physiological roles played by these proteins remain to be elucidated. We isolated a high M(r) (HMW) form of h-type Trx from the heat-treated cytosolic extracts of Arabidopsis (Arabidopsis thaliana) suspension cells and designated it as AtTrx-h3. Using bacterially expressed recombinant AtTrx-h3, we find that it forms various protein structures ranging from low and oligomeric protein species to HMW complexes. And the AtTrx-h3 performs dual functions, acting as a disulfide reductase and as a molecular chaperone, which are closely associated with its molecular structures. The disulfide reductase function is observed predominantly in the low M(r) forms, whereas the chaperone function predominates in the HMW complexes. The multimeric structures of AtTrx-h3 are regulated not only by heat shock but also by redox status. Two active cysteine residues in AtTrx-h3 are required for disulfide reductase activity, but not for chaperone function. AtTrx-h3 confers enhanced heat-shock tolerance in Arabidopsis, primarily through its chaperone function.


Subject(s)
Arabidopsis/enzymology , Heat-Shock Response , Thioredoxin h/metabolism , Thioredoxin-Disulfide Reductase/metabolism , Arabidopsis/cytology , Arabidopsis/genetics , Cysteine/metabolism , Models, Biological , Molecular Chaperones , Molecular Weight , Oxidation-Reduction , Photosynthesis , Plants, Genetically Modified , Protein Transport , Subcellular Fractions/metabolism , Thioredoxin h/chemistry , Thioredoxin-Disulfide Reductase/chemistry
17.
Proc Natl Acad Sci U S A ; 106(14): 5978-83, 2009 Apr 07.
Article in English | MEDLINE | ID: mdl-19293385

ABSTRACT

We found that Arabidopsis AtTDX, a heat-stable and plant-specific thioredoxin (Trx)-like protein, exhibits multiple functions, acting as a disulfide reductase, foldase chaperone, and holdase chaperone. The activity of AtTDX, which contains 3 tetratricopeptide repeat (TPR) domains and a Trx motif, depends on its oligomeric status. The disulfide reductase and foldase chaperone functions predominate when AtTDX occurs in the low molecular weight (LMW) form, whereas the holdase chaperone function predominates in the high molecular weight (HMW) complexes. Because deletion of the TPR domains results in a significant enhancement of AtTDX disulfide reductase activity and complete loss of the holdase chaperone function, our data suggest that the TPR domains of AtTDX block the active site of Trx and play a critical role in promoting the holdase chaperone function. The oligomerization status of AtTDX is reversibly regulated by heat shock, which causes a transition from LMW to HMW complexes with concomitant functional switching from a disulfide reductase and foldase chaperone to a holdase chaperone. Overexpression of AtTDX in Arabidopsis conferred enhanced heat shock resistance to plants, primarily via its holdase chaperone activity.


Subject(s)
Arabidopsis Proteins/physiology , Heat-Shock Response , Thioredoxins/physiology , Dimerization , Heat-Shock Response/genetics , Molecular Chaperones , Molecular Weight , NADH, NADPH Oxidoreductases
18.
Int J Syst Evol Microbiol ; 58(Pt 10): 2266-70, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18842838

ABSTRACT

An aerobic, yellow-pigmented, Gram-negative bacterium, designated strain BD-b365(T), was isolated from sediment of the Hakjang stream in Busan, South Korea. Growth was observed at 15-40 degrees C (optimum 20-30 degrees C) and at pH 6.0-9.5 (optimum pH 7.0-8.0). Cells were non-spore-forming rods that showed gliding motility and contained branched and hydroxy fatty acids. The G+C content of the genomic DNA was 35.4 mol%. The major respiratory quinone was menaquinone-6 (MK-6). The major polar lipid of strain BD-b365(T) was phosphatidylethanolamine. Comparative 16S rRNA gene sequence analysis showed that strain BD-b365(T) formed a distinct phyletic line within the genus Flavobacterium. Based on levels of 16S rRNA gene sequence similarity, the novel strain was related most closely to Flavobacterium aquidurense WB 1.1-56(T), but the level of DNA-DNA relatedness between these two strains was only 9.6 %. On the basis of phenotypic and genotypic data, it is clear that strain BD-b365(T) represents a novel species of the genus Flavobacterium, for which the name Flavobacterium resistens sp. nov. is proposed. The type strain is BD-b365(T) (=KCTC 22078(T) =DSM 19382(T)).


Subject(s)
Flavobacterium/classification , Flavobacterium/genetics , Water Microbiology , Bacterial Typing Techniques , Base Composition , Fatty Acids/chemistry , Flavobacterium/chemistry , Flavobacterium/isolation & purification , Genes, Bacterial , Genes, rRNA , Genotype , Geologic Sediments/microbiology , Korea , Molecular Sequence Data , Phenotype , RNA, Ribosomal, 16S/genetics , Rivers/microbiology , Sequence Analysis, DNA
19.
Plant Physiol ; 148(2): 808-17, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18723667

ABSTRACT

Plant cells contain several thioredoxin isoforms that are characterized by subcellular localization and substrate specificity. Here, we describe the functional characterization of a rice (Oryza sativa) thioredoxin m isoform (Ostrxm) using a reverse genetics technique. Ostrxm showed green tissue-specific and light-responsive mRNA expression. Ostrxm was localized in chloroplasts of rice mesophyll cells, and the recombinant protein showed dithiothreitol-dependent insulin beta-chain reduction activity in vitro. RNA interference (RNAi) of Ostrxm resulted in rice plants with developmental defects, including semidwarfism, pale-green leaves, abnormal chloroplast structure, and reduced carotenoid and chlorophyll content. Ostrxm RNAi plants showed remarkably decreased F(v)/F(m) values under high irradiance conditions (1,000 micromol m(-2) s(-1)) with delayed recovery. Two-dimensional electrophoresis and matrix-assisted laser-desorption/ionization time-of-flight analysis showed that the levels of several chloroplast proteins critical for photosynthesis and biogenesis were significantly decreased in Ostrxm RNAi plants. Furthermore, 2-Cys peroxiredoxin, a known target of thioredoxin, was present in oxidized forms, and hydrogen peroxide levels were increased in Ostrxm RNAi plants. The pleiotropic effects of Ostrxm RNAi suggest that Ostrxm plays an important role in the redox regulation of chloroplast target proteins involved in diverse physiological functions.


Subject(s)
Chloroplast Thioredoxins/metabolism , Chloroplasts/metabolism , Oryza/metabolism , Plant Proteins/metabolism , Carotenoids/metabolism , Chlorophyll/metabolism , Chloroplast Thioredoxins/genetics , Chloroplasts/ultrastructure , Dithiothreitol/metabolism , Electrophoresis, Gel, Two-Dimensional , Genes, Plant , Hydrogen Peroxide/metabolism , Oryza/genetics , Oryza/growth & development , Peroxiredoxins/metabolism , Phenotype , Photosynthesis , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Protein Isoforms/genetics , Protein Isoforms/metabolism , RNA Interference , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Plant/genetics , RNA, Plant/metabolism , Receptor, Insulin/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Substrate Specificity
20.
Biochem Biophys Res Commun ; 348(2): 478-84, 2006 Sep 22.
Article in English | MEDLINE | ID: mdl-16884685

ABSTRACT

2-Cys peroxiredoxins (Prxs) play important roles in the antioxidative defense systems of plant chloroplasts. In order to determine the interaction partner for these proteins in Arabidopsis, we used a yeast two-hybrid screening procedure with a C175S-mutant of Arabidopsis 2-Cys Prx-A as bait. A cDNA encoding an NADPH-dependent thioredoxin reductase (NTR) isotype C was identified and designated ANTR-C. We demonstrated that this protein effected efficient transfer of electrons from NADPH to the 2-Cys Prxs of chloroplasts. Interaction between 2-Cys Prx-A and ANTR-C was confirmed by a pull-down experiment. ANTR-C contained N-terminal TR and C-terminal Trx domains. It exhibited both TR and Trx activities and co-localized with 2-Cys Prx-A in chloroplasts. These results suggest that ANTR-C functions as an electron donor for plastidial 2-Cys Prxs and represents the NADPH-dependent TR/Trx system in chloroplasts.


Subject(s)
Arabidopsis Proteins/metabolism , Peroxidases/metabolism , Thioredoxin-Disulfide Reductase/metabolism , Arabidopsis/enzymology , Chloroplasts/enzymology , Electrons , NADP/metabolism , Peroxiredoxins
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