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1.
J Mol Biol ; 434(11): 167408, 2022 06 15.
Article in English | MEDLINE | ID: mdl-34929203

ABSTRACT

Detecting viral and vector integration events is a key step when investigating interactions between viral and host genomes. This is relevant in several fields, including virology, cancer research and gene therapy. For example, investigating integrations of wild-type viruses such as human papillomavirus and hepatitis B virus has proven to be crucial for understanding the role of these integrations in cancer. Furthermore, identifying the extent of vector integration is vital for determining the potential for genotoxicity in gene therapies. To address these questions, we developed isling, the first tool specifically designed for identifying viral integrations in both wild-type and vector from next-generation sequencing data. Isling addresses complexities in integration behaviour including integration of fragmented genomes and integration junctions with ambiguous locations in a host or vector genome, and can also flag possible vector recombinations. We show that isling is up to 1.6-fold faster and up to 170% more accurate than other viral integration tools, and performs well on both simulated and real datasets. Isling is therefore an efficient and application-agnostic tool that will enable a broad range of investigations into viral and vector integration. These include comparisons between integrations of wild-type viruses and gene therapy vectors, as well as assessing the genotoxicity of vectors and understanding the role of viruses in cancer.


Subject(s)
Genetic Therapy , Genetic Vectors , Software , Virus Integration , Alphapapillomavirus/physiology , Genetic Vectors/physiology , Hepatitis B virus/physiology , High-Throughput Nucleotide Sequencing , Humans , Neoplasms/virology
2.
Viruses ; 13(12)2021 12 10.
Article in English | MEDLINE | ID: mdl-34960740

ABSTRACT

Understanding and modulating the early steps in oncogenic Human Papillomavirus (HPV) infection has great cancer-preventative potential, as this virus is the etiological agent of virtually all cervical cancer cases and is associated with many other anogenital and oropharyngeal cancers. Previous work from our laboratory has identified cell-surface-expressed vimentin as a novel HPV16 pseudovirus (HPV16-PsVs)-binding molecule modulating its infectious potential. To further explore its mode of inhibiting HPV16-PsVs internalisation, we supplemented it with exogenous recombinant human vimentin and show that only the globular form of the molecule (as opposed to the filamentous form) inhibited HPV16-PsVs internalisation in vitro. Further, this inhibitory effect was only transient and not sustained over prolonged incubation times, as demonstrated in vitro and in vivo, possibly due to full-entry molecule engagement by the virions once saturation levels have been reached. The vimentin-mediated delay of HPV16-PsVs internalisation could be narrowed down to affecting multiple steps during the virus' interaction with the host cell and was found to affect both heparan sulphate proteoglycan (HSPG) binding as well as the subsequent entry receptor complex engagement. Interestingly, decreased pseudovirus internalisation (but not infection) in the presence of vimentin was also demonstrated for oncogenic HPV types 18, 31 and 45. Together, these data demonstrate the potential of vimentin as a modulator of HPV infection which can be used as a tool to study early mechanisms in infectious internalisation. However, further refinement is needed with regard to vimentin's stabilisation and formulation before its development as an alternative prophylactic means.


Subject(s)
Human papillomavirus 16/physiology , Vimentin/pharmacology , Virus Internalization , Alphapapillomavirus/physiology , Animals , Cell Membrane/virology , Female , HEK293 Cells , Heparan Sulfate Proteoglycans/metabolism , Host-Pathogen Interactions , Humans , Mice , Mice, Inbred C57BL , Papillomavirus Infections/virology , Protein Conformation , Receptors, Virus/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/pharmacology , Vimentin/chemistry , Viral Pseudotyping , Virion/physiology
3.
J Reprod Immunol ; 148: 103435, 2021 11.
Article in English | MEDLINE | ID: mdl-34741834

ABSTRACT

Cervical carcinoma is significantly associated with the human papillomavirus (HPV). Persistent infection with high risk-HPV is necessary but not sufficient for the development of cervical cancer. It is not fully understood which immunological mechanisms lead to persistence in some patients. During the life cycle, HPV uses excellent immune evasion mechanisms. Keratinocytes, Langerhans cells (LC), dendritic cells (DC), tissue-resident macrophages, and intraepithelial gamma-delta T cells (γδ T cells) are cellular components of the mucosal immune defense of the female genital tract against HPV. γδ T cells, the prototype of unconventional T cells, play a major role in the first line defense of epithelial barrier protection. γδ T cells connect the innate and adaptive immunity and behave like a guardian of the epithelium against any form of damage such as trauma and infection. Any changes in γδ T cell distribution and functional capability may have a role in persistent HPV infection and cervical carcinogenesis in the early phase. Poor stimulation and maturation of APCs (LC/DC) might lead to persistent HPV infection which all point out pivotal role of γδ T cells in HPV persistence. If such an intriguing link is proven, γδ T cells can be used in potential therapeutics against HPV in infected patients.


Subject(s)
Alphapapillomavirus/physiology , Antigen-Presenting Cells/immunology , Cervix Uteri/immunology , Papillomavirus Infections/immunology , T-Lymphocytes/immunology , Animals , Cell Differentiation , Cervix Uteri/virology , Female , Humans , Immunity, Innate , Receptor Cross-Talk , Receptors, Antigen, T-Cell, gamma-delta/metabolism
4.
mBio ; 12(6): e0268421, 2021 12 21.
Article in English | MEDLINE | ID: mdl-34749533

ABSTRACT

The life cycle of human papillomavirus (HPV) depends on keratinocyte differentiation as the virus modulates and takes advantage of cellular pathways to replicate its genome and assemble viral particles in differentiated cells. Viral genomes are amplified in nuclear replication foci in differentiated keratinocytes, and DNA repair factors from the DNA damage response signaling pathway are recruited to replicate viral DNA. The HPV genome is associated with cellular histones at all stages of the infectious cycle, and here, we show that the histone variant macroH2A1 is bound to the HPV genome and enriched in viral replication foci in differentiated cells. macroH2A1 isoforms play important roles in cellular transcriptional repression, double-strand break repair, and replication stress. The viral E8^E2 protein also binds to the HPV genome and inhibits viral replication and gene expression by recruiting NCoR/SMRT complexes. We show here that E8^E2 and SMRT also localize within replication foci, though independently from macroH2A1. Conversely, transcription complexes containing RNA polymerase II and Brd4 are located on the surface of the foci. Foci generated with an HPV16 E8^E2 mutant genome are not enriched for SMRT or macroH2A1 but contain transcriptional complexes throughout the foci. We propose that both the cellular macroH2A1 protein and viral E8^E2 protein help to spatially separate replication and transcription activities within viral replication foci. IMPORTANCE Human papillomaviruses are small DNA viruses that cause chronic infection of cutaneous and mucosal epithelium. In some cases, persistent infection with HPV can result in cancer, and 5% of human cancers are the result of HPV infection. In differentiated cells, HPV amplifies viral DNA in nuclear replication factories and transcribes late mRNAs to produce capsid proteins. However, very little is known about the spatial organization of these activities in the nucleus. Here, we show that repressive viral and cellular factors localize within the foci to suppress viral transcription, while active transcription takes place on the surface. The cellular histone variant macroH2A1 is important for this spatial organization.


Subject(s)
Alphapapillomavirus/physiology , Genome, Viral , Papillomavirus Infections/virology , Virus Replication , Alphapapillomavirus/genetics , Histones/genetics , Histones/metabolism , Host-Pathogen Interactions , Humans , Nuclear Receptor Co-Repressor 1/genetics , Nuclear Receptor Co-Repressor 1/metabolism , Nuclear Receptor Co-Repressor 2/genetics , Nuclear Receptor Co-Repressor 2/metabolism , Oncogene Proteins, Viral/genetics , Oncogene Proteins, Viral/metabolism , Papillomavirus Infections/genetics , Papillomavirus Infections/metabolism
5.
Viruses ; 13(9)2021 09 16.
Article in English | MEDLINE | ID: mdl-34578427

ABSTRACT

Papillomaviruses cause persistent, and usually self-limiting, infections in the mucosal and cutaneous surfaces of the host epithelium. However, in some cases, infection with an oncogenic HPV can lead to cancer. The viral genome is a small, double-stranded circular DNA molecule that is assembled into nucleosomes at all stages of infection. The viral minichromosome replicates at a low copy number in the nucleus of persistently infected cells using the cellular replication machinery. When the infected cells differentiate, the virus hijacks the host DNA damage and repair pathways to replicate viral DNA to a high copy number to generate progeny virions. This strategy is highly effective and requires a close association between viral and host chromatin, as well as cellular processes associated with DNA replication, repair, and transcription. However, this association can lead to accidental integration of the viral genome into host DNA, and under certain circumstances integration can promote oncogenesis. Here we describe the fate of viral DNA at each stage of the viral life cycle and how this might facilitate accidental integration and subsequent carcinogenesis.


Subject(s)
Alphapapillomavirus/genetics , Alphapapillomavirus/physiology , DNA, Viral/genetics , DNA, Viral/metabolism , Genome, Viral , Papillomavirus Infections/virology , Virus Integration , Carcinogenesis , Cell Differentiation , Cell Proliferation , Chromosomes, Human/virology , Humans , Mitosis , Promyelocytic Leukemia Nuclear Bodies/virology , Viral Proteins/metabolism , Virus Replication
6.
Br J Cancer ; 125(10): 1408-1419, 2021 11.
Article in English | MEDLINE | ID: mdl-34526665

ABSTRACT

BACKGROUND: Integration of human papillomavirus (HPV) into the host genome is a dominant feature of invasive cervical cancer (ICC), yet the tumorigenicity of cis genomic changes at integration sites remains largely understudied. METHODS: Combining multi-omics data from The Cancer Genome Atlas with patient-matched long-read sequencing of HPV integration sites, we developed a strategy for using HPV integration events to identify and prioritise novel candidate ICC target genes (integration-detected genes (IDGs)). Four IDGs were then chosen for in vitro functional studies employing small interfering RNA-mediated knockdown in cell migration, proliferation and colony formation assays. RESULTS: PacBio data revealed 267 unique human-HPV breakpoints comprising 87 total integration events in eight tumours. Candidate IDGs were filtered based on the following criteria: (1) proximity to integration site, (2) clonal representation of integration event, (3) tumour-specific expression (Z-score) and (4) association with ICC survival. Four candidates prioritised based on their unknown function in ICC (BNC1, RSBN1, USP36 and TAOK3) exhibited oncogenic properties in cervical cancer cell lines. Further, annotation of integration events provided clues regarding potential mechanisms underlying altered IDG expression in both integrated and non-integrated ICC tumours. CONCLUSIONS: HPV integration events can guide the identification of novel IDGs for further study in cervical carcinogenesis and as putative therapeutic targets.


Subject(s)
Alphapapillomavirus/physiology , Gene Expression Profiling/methods , Papillomavirus Infections/genetics , Uterine Cervical Neoplasms/virology , Whole Genome Sequencing/methods , Cell Line, Tumor , Cell Movement , Cell Proliferation , DNA-Binding Proteins/genetics , Female , Gene Expression Regulation, Neoplastic , HeLa Cells , Humans , Papillomavirus Infections/virology , Protein Serine-Threonine Kinases/genetics , Survival Analysis , Transcription Factors/genetics , Ubiquitin Thiolesterase/genetics , Uterine Cervical Neoplasms/genetics , Virus Integration
7.
Fam Community Health ; 44(4): 245-256, 2021.
Article in English | MEDLINE | ID: mdl-34397570

ABSTRACT

We compared the effectiveness of an educational intervention at reducing stigma and improving knowledge of human papillomavirus (HPV) and cervical cancer among Nigerian men and women. We used a pre-/posttest design to deliver 2 educational interventions to 266 adults. Low knowledge was observed at baseline, which improved significantly post-intervention with no difference between groups. No significant changes were observed between groups in 5 out the 6 stigma domains. Health education was effective in improving knowledge. However, the lack of positive change in stigma shows urgent need for HPV and cervical cancer stigma reduction interventions.


Subject(s)
Alphapapillomavirus , Health Education , Papillomavirus Infections , Adult , Alphapapillomavirus/physiology , Female , Health Education/standards , Health Education/statistics & numerical data , Health Knowledge, Attitudes, Practice , Humans , Male , Nigeria , Papillomavirus Infections/complications , Papillomavirus Infections/prevention & control , Papillomavirus Vaccines , Patient Acceptance of Health Care , Uterine Cervical Neoplasms/prevention & control
8.
Am J Pathol ; 191(10): 1774-1786, 2021 10.
Article in English | MEDLINE | ID: mdl-34303699

ABSTRACT

Viruses are the second leading cause of cancer worldwide, and human papillomavirus (HPV)-associated head and neck cancers are increasing in incidence in the United States. HPV preferentially infects the crypts of the tonsils rather than the surface epithelium. The present study sought to characterize the unique microenvironment within the crypts to better understand the viral tropism of HPV to a lymphoid-rich organ. Laser-capture microdissection of distinct anatomic areas (crypts, surface epithelium, and germinal centers) of the tonsil, coupled with transcriptional analysis and multiparameter immunofluorescence staining demonstrated that the tonsillar crypts are enriched with myeloid populations that co-express multiple canonical and noncanonical immune checkpoints, including PD-L1, CTLA-4, HAVCR2 (TIM-3), ADORA2A, IDO1, BTLA, LGALS3, CDH1, CEACAM1, PVR, and C10orf54 (VISTA). The resident monocytes may foster a permissive microenvironment that facilitates HPV infection and persistence. Furthermore, the myeloid populations within HPV-associated tonsil cancers co-express the same immune checkpoints, providing insight into potential novel immunotherapeutic targets for HPV-associated head and neck cancers.


Subject(s)
Alphapapillomavirus/physiology , Myeloid Cells/pathology , Myeloid Cells/virology , Palatine Tonsil/pathology , Palatine Tonsil/virology , Viral Tropism/physiology , Antigens, CD/metabolism , B7 Antigens/metabolism , B7-H1 Antigen/metabolism , Cell Adhesion Molecules/metabolism , Epithelium/pathology , Epithelium/virology , Germinal Center/pathology , Head and Neck Neoplasms/pathology , Head and Neck Neoplasms/virology , Humans , Immune Checkpoint Proteins/metabolism , Laser Capture Microdissection , Monocytes/pathology , Receptors, Virus/metabolism , Transcriptome/genetics
9.
Int J Cancer ; 149(10): 1833-1844, 2021 11 15.
Article in English | MEDLINE | ID: mdl-34310698

ABSTRACT

Human papillomavirus (HPV)-induced anal intraepithelial neoplasia (AIN, graded 1-3) is highly prevalent in HIV-positive (HIV+) men who have sex with men (MSM), but only a minority of lesions progresses to cancer. Our study aimed to characterise comprehensively anal tissue samples from a cross-sectional series (n = 104) of HIV+ MSM and longitudinal series (n = 40) of AIN2/3 progressing to cancer using different biomarkers. The cross-sectional series consisted of 8 normal, 26 AIN1, 45 AIN2, 15 AIN3 and 10 anal squamous cell carcinoma. Tissue sections were immunohistochemically (IHC) stained for p16 (viral transformation marker), Ki-67 (cellular proliferation marker) and HPV-E4 (viral production marker). We evaluated the expression of IHC markers and compared it with DNA methylation, a marker for malignant transformation. E4 positivity decreased, whereas p16 and Ki-67 scores and methylation marker positivity increased (P values < .001) with increasing severity of anal lesions. Within AIN2, a heterogeneous biomarker pattern was observed concerning E4, p16 and methylation status, reflecting the biological heterogeneity of these lesions. In the longitudinal series, all AIN2/3 and carcinomas showed high p16 and Ki-67 expression, strong methylation positivity and occasional E4 positivity. We earlier showed that high methylation levels are associated with progression to cancer. The observed E4 expression in some AIN2/3 during the course of progression to cancer and absence of E4 in a considerable number of AIN1 lesions make the potential clinical significance of E4 expression difficult to interpret. Our data show that IHC biomarkers can help to characterise AIN; however, their prognostic value for cancer risk stratification, next to objective methylation analysis, appears to be limited.


Subject(s)
Anal Canal/metabolism , Anus Neoplasms/metabolism , Biomarkers, Tumor/biosynthesis , Carcinoma in Situ/metabolism , Cyclin-Dependent Kinase Inhibitor p16/biosynthesis , HIV Infections/metabolism , Homosexuality, Male/statistics & numerical data , Ki-67 Antigen/biosynthesis , Adult , Alphapapillomavirus/metabolism , Alphapapillomavirus/physiology , Anal Canal/pathology , Anus Neoplasms/diagnosis , Anus Neoplasms/genetics , Biomarkers, Tumor/genetics , Carcinoma in Situ/diagnosis , Carcinoma in Situ/genetics , Cross-Sectional Studies , DNA Methylation , HIV Infections/genetics , HIV Infections/virology , Humans , Immunohistochemistry/methods , Male , Oncogene Proteins, Viral/biosynthesis , Papillomavirus Infections/genetics , Papillomavirus Infections/metabolism , Papillomavirus Infections/virology , Retrospective Studies
10.
J Med Virol ; 93(11): 6089-6099, 2021 11.
Article in English | MEDLINE | ID: mdl-34180541

ABSTRACT

The role of human papillomavirus (HPV) in the development of oral lesions is controversial. There has been no comprehensive study about HPV prevalence in Iran. This systematic review and meta-analysis were aimed at finding HPV prevalence of oral lesions and normal oral mucosa in Iran. International (PubMed, Web of Science, and Scopus) and national (Iranmedex, Irandoc, and SID) databases were searched systematically until October 2020. Studies that examined the prevalence of HPV in oral lesions by polymerase chain reaction method were included. The heterogeneity of articles was assessed with the Cochran test and I-Square statistics. The prevalence rate of HPV was calculated using a random-effect model. Of 3729 initially searched articles, 29 articles were eligible for inclusion. The overall prevalence of HPV in oral lesions was 21%. The prevalence was the highest in Rasht (50%) city. Lip lesions had the highest HPV prevalence (40%). According to the classification of lesions, the highest prevalence was of precancerous lesions (29%) and the lowest in normal mucosa (8%). Well-differentiated tumors showed a higher prevalence than poorly-differentiated ones. The highest prevalence of HPV was hairy leukoplakia (70%) and the lowest was of pyogenic granuloma (6%). Also, the prevalence was 31% in oral squamous cell carcinoma. There are differences between HPV prevalence according to the geographical area, intraoral location, type of lesion, and grading. As HPV prevalence was fairly high, further attention to vaccination and treatment for HPV in Iran, as a potential risk factor for oral precancerous and cancerous lesions is recommended.


Subject(s)
Alphapapillomavirus/genetics , Alphapapillomavirus/physiology , Carcinoma, Squamous Cell/virology , Mouth Neoplasms/virology , Papillomavirus Infections/complications , Granuloma, Pyogenic/virology , Humans , Iran/epidemiology , Leukoplakia, Oral/virology , Mouth Mucosa/virology , Papillomavirus Infections/epidemiology , Precancerous Conditions/virology , Prevalence
11.
OMICS ; 25(6): 358-371, 2021 06.
Article in English | MEDLINE | ID: mdl-34037476

ABSTRACT

About a tenth of all cancers are caused by viruses or associated with viral infection. Recent global events including the coronavirus disease-2019 (COVID-19) pandemic means that human encounter with viruses is increased. Cancer development in individuals with viral infection can take many years after infection, demonstrating that the involvement of viruses in cancer development is a long and complex process. This complexity emanates from individual genetic heterogeneity and the many steps involved in cancer development owing to viruses. The process of tumorigenesis is driven by the complex interaction between several viral factors and host factors leading to the creation of a tumor microenvironment (TME) that is ideal and promotes tumor formation. Viruses associated with human cancers ensure their survival and proliferation through activation of several cellular processes including inflammation, migration, and invasion, resistance to apoptosis and growth suppressors. In addition, most human oncoviruses evade immune detection and can activate signaling cascades including the PI3K-Akt-mTOR, Notch and Wnt pathways associated with enhanced proliferation and angiogenesis. This expert review examines and synthesizes the multiple biological factors related to oncoviruses, and the signaling cascades activated by these viruses contributing to viral oncogenesis. In particular, I examine and review the Epstein-Barr virus, human papillomaviruses, and Kaposi's sarcoma herpes virus in a context of cancer pathogenesis. I conclude with a future outlook on therapeutic targeting of the viruses and their associated oncogenic pathways within the TME. These anticancer strategies can be in the form of, but not limited to, antibodies and inhibitors.


Subject(s)
Epstein-Barr Virus Infections/virology , Neoplasms/virology , Papillomavirus Infections/virology , Retroviridae Infections/virology , Retroviridae/physiology , Sarcoma, Kaposi/virology , Tumor Virus Infections/virology , Alphapapillomavirus/physiology , Carcinogenesis , Cell Transformation, Viral , Epstein-Barr Virus Infections/pathology , Herpesvirus 4, Human/physiology , Herpesvirus 8, Human/physiology , Humans , Molecular Targeted Therapy , Neoplasms/pathology , Neoplasms/therapy , Papillomavirus Infections/pathology , Retroviridae Infections/pathology , Sarcoma, Kaposi/pathology , Signal Transduction , Tumor Microenvironment , Tumor Virus Infections/pathology
12.
PLoS Pathog ; 17(5): e1009580, 2021 05.
Article in English | MEDLINE | ID: mdl-33974675

ABSTRACT

Human papillomaviruses (HPVs) utilize an atypical mode of nuclear import during cell entry. Residing in the Golgi apparatus until mitosis onset, a subviral complex composed of the minor capsid protein L2 and viral DNA (L2/vDNA) is imported into the nucleus after nuclear envelope breakdown by associating with mitotic chromatin. In this complex, L2 plays a crucial role in the interactions with cellular factors that enable delivery and ultimately tethering of the viral genome to mitotic chromatin. To date, the cellular proteins facilitating these steps remain unknown. Here, we addressed which cellular proteins may be required for this process. Using label-free mass spectrometry, biochemical assays, microscopy, and functional virological assays, we discovered that L2 engages a hitherto unknown protein complex of Ran-binding protein 10 (RanBP10), karyopherin alpha2 (KPNA2), and dynein light chain DYNLT3 to facilitate transport towards mitotic chromatin. Thus, our study not only identifies novel cellular interactors and mechanism that facilitate a poorly understood step in HPV entry, but also a novel cellular transport complex.


Subject(s)
Alphapapillomavirus/physiology , Capsid Proteins/metabolism , Cell Nucleus/metabolism , DNA, Viral/metabolism , Genome, Viral/genetics , Guanine Nucleotide Exchange Factors/metabolism , Microtubule-Associated Proteins/metabolism , Papillomavirus Infections/virology , Active Transport, Cell Nucleus , Alphapapillomavirus/genetics , Capsid Proteins/genetics , Chromatin/genetics , Dyneins/genetics , Dyneins/metabolism , Guanine Nucleotide Exchange Factors/genetics , Humans , Microtubule-Associated Proteins/genetics , Mitosis , Virus Internalization , alpha Karyopherins/genetics , alpha Karyopherins/metabolism
13.
JNCI Cancer Spectr ; 5(2): pkab011, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33748668

ABSTRACT

The current global novel coronavirus disease 2019 (COVID-19) pandemic threatens to derail the uptake of human papillomavirus (HPV) vaccination in low- and lower-middle income countries with major disruptions to routine immunization and the introduction of new vaccines delayed. This has a major impact on the World Health Organization cervical cancer elimination strategy, where it is dependent on HPV vaccination as well as cervical cancer screening and treatment. We discuss current opportunities and barriers to achieve high uptake of HPV vaccination in low- and lower-middle income countries as well as the impact of COVID-19. Implementation of 4 key recommendations for HPV vaccination in low- and lower-middle income countries is needed: increased global financial investment; improved vaccine supply and accelerated use of a single-dose schedule; education and social marketing; and adoption of universal school-based delivery. With the commitment of the global health community, the adoption of these strategies would underpin the effective elimination of cervical cancer.


Subject(s)
Alphapapillomavirus/immunology , COVID-19/complications , Papillomavirus Infections/immunology , Papillomavirus Vaccines/immunology , Uterine Cervical Neoplasms/immunology , Vaccination/statistics & numerical data , Alphapapillomavirus/physiology , COVID-19/epidemiology , COVID-19/virology , Developing Countries , Female , Humans , Immunization Programs/economics , Immunization Programs/statistics & numerical data , Pandemics , Papillomavirus Infections/complications , Papillomavirus Infections/prevention & control , Papillomavirus Vaccines/administration & dosage , SARS-CoV-2/physiology , Uterine Cervical Neoplasms/prevention & control , Uterine Cervical Neoplasms/virology , Vaccination/methods
14.
Immunol Invest ; 50(7): 821-832, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33724139

ABSTRACT

The identification of the human papillomavirus (HPV) as the causative agent of multiple cancers allowed for the development of vaccines and immunization strategies to prevent cancers caused by HPV infection. The public health ramifications of reduction of HPV disease burden are momentous in scope. Vaccine hesitancy has impacted widespread vaccination, but strategies have been identified to combat vaccine safety and efficacy misinformation and promote immunization.


Subject(s)
Alphapapillomavirus/physiology , Papillomavirus Infections/immunology , Papillomavirus Vaccines/immunology , Uterine Cervical Neoplasms/prevention & control , Autoimmunity , Female , Humans , Papillomavirus Infections/complications , Papillomavirus Vaccines/adverse effects , Public Health , Uterine Cervical Neoplasms/etiology , Vaccination , Vaccination Hesitancy
15.
Am J Reprod Immunol ; 86(1): e13394, 2021 07.
Article in English | MEDLINE | ID: mdl-33501727

ABSTRACT

PROBLEM: Cervical cancer screening strategies in the United States include cotesting (human papillomavirus (HPV) with cytology), primary HPV with genotyping and reflex cytology, and cytology alone. An ongoing challenge is the appropriate triage of patients to colposcopy to those at highest risk. We investigated whether incorporation of p16INK4a immunodetection by enzyme-linked immunosorbent assay (ELISA) on fresh cervical samples obtained at the time of screening could improve appropriate referral to colposcopy. METHOD OF STUDY: A derivation group comprised of cervical swabs collected from subjects with high-grade dysplasia or cancer (positive control) and from subjects with negative screening history (negative control). Samples collected from colposcopy were used to evaluate the existing screening strategies individually and with incorporation of p16INK4a ELISA. Histology was used as the gold standard. RESULTS: Among 163 subjects recruited, 138 were included. In the derivation group, mean p16INK4a level was 2.86 ng/mL (n = 31) and 0.58 ng/mL (n = 20) among positive and negative controls respectively (p = 0.002) with an area under the receiver operator characteristic curve of 0.79 (p < 0.001). Among colposcopy subjects, sensitivity/specificity for cotesting, primary HPV, and cytology were 94%/42%, 88%/45%, and 88%/49%, respectively. Incorporation of p16INK4a resulted in similar sensitivity and improved specificity (cotesting+p16 88%/58%, primary HPV+p16 88%/57%, cytology+p16 81%/62%; p = 0.23/p = 0.008) with decrease in colposcopy referrals by 15% to 22% (p = 0.01). CONCLUSIONS: These results demonstrate the feasibility of quantifying p16INK4a by ELISA in fresh cervical samples, and its potential as an adjunct to existing screening strategies in the identification of high grade-dysplasia while reducing the number of colposcopic referrals.


Subject(s)
Alphapapillomavirus/physiology , Cervix Uteri/metabolism , Cyclin-Dependent Kinase Inhibitor p16/metabolism , Early Detection of Cancer/methods , Papillomavirus Infections/diagnosis , Uterine Cervical Neoplasms/diagnosis , Adult , Biomarkers , Cervix Uteri/pathology , Cohort Studies , Colposcopy , Cyclin-Dependent Kinase Inhibitor p16/genetics , Enzyme-Linked Immunosorbent Assay , Feasibility Studies , Female , HeLa Cells , Humans , Middle Aged , Prospective Studies , Referral and Consultation , Sensitivity and Specificity , Triage
16.
J Gen Virol ; 102(3)2021 03.
Article in English | MEDLINE | ID: mdl-33427604

ABSTRACT

Persistent infection with high-risk human papillomaviruses (HR-HPVs) is the causal factor in over 99 % of cervical cancer cases, and a significant proportion of oropharyngeal and anogenital cancers. The key drivers of HPV-mediated transformation are the oncoproteins E5, E6 and E7. Together, they act to prolong cell-cycle progression, delay differentiation and inhibit apoptosis in the host keratinocyte cell in order to generate an environment permissive for viral replication. The oncoproteins also have key roles in mediating evasion of the host immune response, enabling infection to persist. Moreover, prolonged infection within the cellular environment established by the HR-HPV oncoproteins can lead to the acquisition of host genetic mutations, eventually culminating in transformation to malignancy. In this review, we outline the many ways in which the HR-HPV oncoproteins manipulate the host cellular environment, focusing on how these activities can contribute to carcinogenesis.


Subject(s)
Alphapapillomavirus/physiology , Cell Transformation, Viral , Oncogene Proteins, Viral/metabolism , Papillomavirus Infections/virology , Alphapapillomavirus/genetics , Alphapapillomavirus/pathogenicity , Apoptosis , Carcinogenesis , Cell Cycle Checkpoints , Cell Differentiation , Cell Proliferation , Cellular Reprogramming , Epigenesis, Genetic , Genome, Viral , Humans , Immune Evasion , Oncogene Proteins, Viral/genetics , PDZ Domains , RNA, Untranslated/genetics , Signal Transduction , Virus Replication
17.
EBioMedicine ; 63: 103165, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33422988

ABSTRACT

BACKGROUND: Recent publications from a single research group have suggested that aldehyde-based high-level disinfectants (HLDs), such as ortho-phthalaldehyde (OPA), are not effective at inactivating HPVs and that therefore, patients may be at risk of HPV infection from medical devices. These results could have significant public health consequences and therefore necessitated evaluation of their reproducibility and clinical relevance. METHODS: We developed methods and used standardised controls to: (1) quantify the infectious levels of clinically-sourced HPVs from patient lesions and compare them to laboratory-derived HPVs, (2) evaluate experimental factors that should be controlled to ensure consistent and reproducible infectivity measurements of different HPV genotypes, and (3) determine the efficacy of select HLDs. FINDINGS: A novel focus forming unit (FFU) infectivity assay demonstrated that exfoliates from patient anogenital lesions and respiratory papillomas yielded infectious HPV burdens up to 2.7 × 103 FFU; therefore, using 2.2 × 102 to 1.0 × 104 FFU of laboratory-derived HPVs in disinfection assays provides a relevant range for clinical exposures. RNase and neutralising antibody sensitivities were used to ensure valid infectivity measures of tissue-derived and recombinant HPV preparations. HPV infectivity was demonstrated over a dynamic range of 4-5 log10; and disinfection with OPA and hypochlorite was achieved over 3 to >4 log10 with multiple genotypes of tissue-derived and recombinant HPV isolates. INTERPRETATION: This work, along with a companion publication from an independent lab in this issue, address a major public health question by showing that HPVs are susceptible to HLDs. FUNDING: Advanced Sterilization Products; US NIH (R01CA207368, U19AI084081, P30CA118100).


Subject(s)
Alphapapillomavirus/drug effects , Alphapapillomavirus/physiology , Disinfectants/pharmacology , Papillomavirus Infections/virology , Viral Load , Alphapapillomavirus/classification , Alphapapillomavirus/genetics , Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , Cell Line , Cells, Cultured , Disinfection/methods , Female , Genome, Viral , Genotype , Humans , Male , Neutralization Tests
18.
Int J Cancer ; 148(8): 1964-1972, 2021 04 15.
Article in English | MEDLINE | ID: mdl-33320983

ABSTRACT

Oral infection with human papillomavirus (HPV) is likely to underpin the rapidly rising incidence of oropharyngeal squamous cell carcinoma; however, there are few data describing the natural history of oral HPV infection. We recruited 704 participants aged 20 to 70 years from worksites, universities and primary care practices in Brisbane, Australia. Participants completed questionnaires at baseline, 12 and 24 months and donate four saliva samples at baseline, 6, 12 and 24 months for HPV polymerase chain reaction testing and typing. We estimated the prevalence of oral HPV infection at baseline, incidence of new infections among those HPV-negative at baseline, clearance rate and persistent infections. At baseline, 10.7% of participants had oral HPV infections from 26 different HPV types. Sexual behaviours were associated with oral HPV infection, including more partners for passionate kissing (29 or more; odds ratio [OR] 3.4, 95% confidence interval [CI] 1.5-8.0), and giving and receiving oral sex (16 or more; OR 5.4, 95% CI 1.6-17.7 and OR 5.6, 95% CI 1.6-18.7, respectively). Of 343 participants, HPV-free at baseline and with subsequent saliva samples, 87 (25%) acquired new infections over the 24 months. Sixty-eight of 87 people included in the clearance analysis (78%) cleared their oral HPV infections. Clearance was associated with being a nonsmoker (OR 12.7, 95% CI 1.3-122.8), and no previous diagnosis of a sexually transmitted infection (OR 6.2, 95% CI 2.0-19.9). New oral infections with HPV in this sample were not rare. Although most infections were cleared, clearance was not universal suggesting a reservoir of infection exists that might predispose to oropharyngeal carcinogenesis.


Subject(s)
Carcinoma, Squamous Cell/diagnosis , Mouth Diseases/diagnosis , Oropharyngeal Neoplasms/diagnosis , Papillomavirus Infections/diagnosis , Surveys and Questionnaires , Adult , Aged , Alphapapillomavirus/classification , Alphapapillomavirus/physiology , Australia/epidemiology , Carcinoma, Squamous Cell/epidemiology , Carcinoma, Squamous Cell/virology , Female , Humans , Incidence , Male , Middle Aged , Mouth Diseases/epidemiology , Mouth Diseases/virology , Oropharyngeal Neoplasms/epidemiology , Oropharyngeal Neoplasms/virology , Papillomavirus Infections/epidemiology , Papillomavirus Infections/virology , Prevalence , Prospective Studies , Saliva/virology , Sexual Behavior/statistics & numerical data , Time Factors , Young Adult
19.
Appl Immunohistochem Mol Morphol ; 29(3): 209-217, 2021 03 01.
Article in English | MEDLINE | ID: mdl-33264105

ABSTRACT

Immunohistochemistry (IHC) improves the diagnosis of cervical adenocarcinoma but is not adequately studied. The performance of 16 antibodies previously reported as potentially discriminating between some histotypes was investigated in 184 tumors comprised of 12 histotype groups collapsed into 3 categories [47 adenocarcinomas in situ (AIS), 121 probable human papillomavirus-dependent adenocarcinomas (HPVD), and 16 of probable independence (HPVI)]. IHC sections from 5 tissue microarrays were scanned, and 3 pathologists independently reviewed images to assess staining percentages and intensities. Biomarker expression was based on published positive and negative cutoffs and agreement between any 2 pathologists. Differences between the 3 categories in the hierarchical ranking of biomarker positivity were analyzed by Random Forest classification, and between select groups by Unsupervised Hierarchical Clustering. Important category discriminants were combined in logistic regression models and the area under the curve (AUC) computed. Potential group discriminants were terminal cluster biomarkers with a 50% or more difference in positivity. Strong associations occurred between the lower expression of carcinoembryonic antigen and stromal actin in AIS compared with HPVD [AUC=0.70, 95% confidence interval (CI), 0.59-0.80] and in the higher expression of p16 and estrogen receptor in comparison to HPVI (AUC=0.86, 95% CI, 0.73-0.98), and between the higher expression of p16, carcinoembryonic antigen and estrogen receptor in HPVD compared with HPVI (AUC=0.88, 95% CI, 0.77-0.99). Between select groups, 9 biomarkers emerged as potential discriminants. Select IHC biomarkers can discriminate AIS from invasive adenocarcinomas, and invasive adenocarcinomas stratified by human papillomavirus dependency from each other. Independent replication in larger studies is needed, and to confirm discriminants of histotype groups.


Subject(s)
Adenocarcinoma/metabolism , Alphapapillomavirus/physiology , Carcinoembryonic Antigen/metabolism , Cyclin-Dependent Kinase Inhibitor p16/metabolism , Papillomavirus Infections/metabolism , Receptors, Estrogen/metabolism , Uterine Cervical Neoplasms/metabolism , Adenocarcinoma/diagnosis , Biomarkers, Tumor/metabolism , Cluster Analysis , Female , Humans , Immunohistochemistry , Papillomavirus Infections/diagnosis , Uterine Cervical Neoplasms/diagnosis
20.
Int J Cancer ; 148(8): 1850-1857, 2021 04 15.
Article in English | MEDLINE | ID: mdl-33070318

ABSTRACT

Attendance at early recall and colposcopy is crucial to attaining the benefits of primary high-risk human papillomavirus (HR-HPV)-based screening. Within the English HPV pilot, we analysed deprivation- and age-related patterns of attendance at colposcopy and 12- and 24-month early recall of HR-HPV positive women screened in 2013 to 2015 (N = 36 466). We fitted logistic regression models for adjusted odds ratios (OR). Despite high overall attendance, area deprivation had a small but significant impact at both early recalls, for example, attendance at 24 months was 86.3% and 83.0% in less vs more deprived areas, respectively (ORadj : 0.76; 95% CI: 0.67-0.87). Older women (≥30 years) were more likely to attend early recall than younger women (<30 years), for example, attendance at 24 months was 86.1% vs 82.3%, respectively (ORadj : 1.32, 95% CI: 1.16-1.51). Most women attended colposcopy following a baseline referral, with 96.9% attendance among more deprived and 97.8% among less deprived areas (ORadj : 0.70; 95% CI: 0.55-0.88). Differences in colposcopy attendance by deprivation level at 12 and 24 months were of approximately the same magnitude. In conclusion, attendance at early recall and colposcopy was reassuringly high. Although there were statistically significant differences by deprivation and age group, these were small in absolute terms.


Subject(s)
Colposcopy/statistics & numerical data , Early Detection of Cancer/statistics & numerical data , Mass Screening/statistics & numerical data , Papillomavirus Infections/diagnosis , Uterine Cervical Dysplasia/diagnosis , Uterine Cervical Neoplasms/diagnosis , Adult , Age Factors , Alphapapillomavirus/physiology , Cervix Uteri/virology , Colposcopy/methods , Early Detection of Cancer/methods , Female , Humans , Mass Screening/methods , Middle Aged , Papillomavirus Infections/virology , Pilot Projects , Referral and Consultation/statistics & numerical data , Uterine Cervical Neoplasms/virology , Vaginal Smears/methods , Vaginal Smears/statistics & numerical data , Young Adult , Uterine Cervical Dysplasia/virology
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