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1.
Chemosphere ; 363: 142957, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39094704

ABSTRACT

Azo dye-containing sewage is commonly detected at high salinity, temperature and pH. In this study, a halo-thermoalkalophilic azo dye decolorization consortium was enriched and named "consortium HL". Consortium HL which was dominated by Marinobacter (84.30%), Desulfocurvibacter (1.89%), and Pseudomonas (1.85%), was able to completely decolorize Direct Blue 5B (DB5) during incubation with the material at 5% salinity, 50 °C, and pH 9 for 30 h. The decolorization mechanism was proposed based on combined metagenomic analysis, GC‒MS, and enzymatic activity detection. The action of the consortium HL showed great tolerance to variations in salinity, temperature and pH. A phytotoxicity study indicated that the metabolic intermediates showed no significant toxicity to the generation of Cucumis sativus and Oryza sativa seeds. This study, in which azo dye decolorization and degradation under high-salt, high-temperature and high-alkalinity conditions were investigated and deeply analyzed by metagenomic information, is the first report regarding the ability of Marinobacter to decolorize azo dyes at high temperatures.


Subject(s)
Biodegradation, Environmental , Marinobacter , Marinobacter/metabolism , Marinobacter/genetics , Azo Compounds/metabolism , Azo Compounds/chemistry , Coloring Agents/metabolism , Coloring Agents/chemistry , Microbial Consortia , Salinity , Sewage/microbiology , Hydrogen-Ion Concentration , Temperature , Water Pollutants, Chemical/metabolism , Water Pollutants, Chemical/analysis , Oryza
2.
World J Microbiol Biotechnol ; 40(10): 303, 2024 Aug 17.
Article in English | MEDLINE | ID: mdl-39153119

ABSTRACT

Dye-decolorizing peroxidases (DyPs) belong to a novel superfamily of heme peroxidases that can oxidize recalcitrant compounds. In the current study, the GlDyP2 gene from Ganoderma lucidum was heterologously expressed in Escherichia coli, and the enzymatic properties of the recombinant GlDyP2 protein were investigated. The GlDyP2 protein could oxidize not only the typical peroxidase substrate ABTS but also two lignin substrates, namely guaiacol and 2,6-dimethoxy phenol (DMP). For the ABTS substrate, the optimum pH and temperature of GlDyP2 were 4.0 and 35 °C, respectively. The pH stability and thermal stability of GlDyP2 were also measured; the results showed that GlDyP2 could function normally in the acidic environment, with a T50 value of 51 °C. Moreover, compared to untreated controls, the activity of GlDyP2 was inhibited by 1.60 mM of Mg2+, Ni2+, Mn2+, and ethanol; 0.16 mM of Cu2+, Zn2+, methanol, isopropyl alcohol, and Na2EDTA·2H2O; and 0.016 mM of Fe2+ and SDS. The kinetic constants of recombinant GlDyP2 for oxidizing ABTS, Reactive Blue 19, guaiacol, and DMP were determined; the results showed that the recombination GlDyP2 exhibited the strongest affinity and the most remarkable catalytic efficiency towards guaiacol in the selected substrates. GlDyP2 also exhibited decolorization and detoxification capabilities towards several dyes, including Reactive Blue 19, Reactive Brilliant Blue X-BR, Reactive Black 5, Methyl Orange, Trypan Blue, and Malachite Green. In conclusion, GlDyP2 has good application potential for treating dye wastewater.


Subject(s)
Coloring Agents , Enzyme Stability , Escherichia coli , Guaiacol , Recombinant Proteins , Reishi , Temperature , Coloring Agents/metabolism , Coloring Agents/chemistry , Reishi/genetics , Reishi/enzymology , Reishi/metabolism , Hydrogen-Ion Concentration , Escherichia coli/genetics , Escherichia coli/metabolism , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/chemistry , Guaiacol/metabolism , Guaiacol/analogs & derivatives , Biodegradation, Environmental , Kinetics , Benzothiazoles/metabolism , Substrate Specificity , Lignin/metabolism , Oxidation-Reduction , Peroxidase/genetics , Peroxidase/metabolism , Peroxidase/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Peroxidases/genetics , Peroxidases/metabolism , Peroxidases/chemistry , Water Pollutants, Chemical/metabolism , Azo Compounds/metabolism , Wastewater/microbiology , Wastewater/chemistry , Sulfonic Acids/metabolism , Anthraquinones , Rosaniline Dyes
3.
World J Microbiol Biotechnol ; 40(10): 310, 2024 Aug 27.
Article in English | MEDLINE | ID: mdl-39190163

ABSTRACT

Dyes are the coloured substances that are applied on different substrates such as textiles, leather and paper products, etc. Azo dyes release from the industries are toxic and recalcitrant wastewater pollutants, therefore it is necessary to degrade these pollutants from water. In this study, the palladium (0) nanoparticles (PdNPs) were generated through the biological process and exhibited for the catalytic degradation of azo dye. The palladium nanoparticles (PdNPs) were synthesized by using the cell-free approach i.e. extract of fungal strain Rhizopus sp. (SG-01), which significantly degrade the azo dye (methyl orange). The amount of catalyst was optimized by varying the concentration of PdNPs (1 mg/mL to 4 mg/mL) for 10 mL of 50 ppm methyl orange (MO) dye separately. The time dependent study demonstrates the biogenic PdNPs could effectively degrade the methyl orange dye up to 98.7% with minimum concentration (3 mg/mL) of PdNPs within 24 h of reaction. The long-term stability and effective catalytic potential up to five repeated cycles of biogenic PdNPs have good significance for acceleration the degradation of azo dyes. Thus, the use of biogenic palladium nanoparticles for dye degradation as outlined in the present study can provide an alternative and economical method for the synthesis of PdNPs as well as degradation of azo dyes present in wastewater and is helpful to efficiently remediate textile effluent.


Subject(s)
Azo Compounds , Biodegradation, Environmental , Coloring Agents , Palladium , Rhizopus , Wastewater , Water Pollutants, Chemical , Azo Compounds/metabolism , Azo Compounds/chemistry , Palladium/chemistry , Palladium/metabolism , Coloring Agents/metabolism , Coloring Agents/chemistry , Catalysis , Water Pollutants, Chemical/metabolism , Wastewater/chemistry , Wastewater/microbiology , Rhizopus/metabolism , Metal Nanoparticles/chemistry
4.
Environ Sci Pollut Res Int ; 31(39): 51568-51581, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39112901

ABSTRACT

The current study proposes RBBR biosorption by Clostridium beijerinckii DSMZ 6422 biomass remaining after biobutanol production from pumpkin peel (PP) by a zero-waste approach. Efficient biobutanol production was achieved by investigating initial PP concentrations (5-20% without or with enzymatic hydrolysis) and fermentation time. According to this, the highest concentrations of biobutanol and total ABE were obtained as 4.87 g/L and 8.13 g/L in the presence of 10% PP without enzymatic hydrolysis at 96 h. Furthermore, based on the zero-waste approach, C. beijerinckii DSMZ 6422 biomass obtained after biofuel production was used as a biosorbent for the removal of RBBR dye. Response surface methodology (RSM), commonly utilized for the experimental design, was used to specify the optimized biosorption conditions of RBBR, including initial dye concentration (50-200 mg/L), initial pH (2-6), biosorbent concentration (1-3 g/L), and contact time (0-240 min). The highest biosorption under optimized conditions with RSM was 98% in the presence of 194.36 mg/L RBBR and 2.65 g/L biosorbent at pH 2 and 15 min. This is the first report in the literature about the biosorption of RBBR dye by anaerobic C. beijerinckii biomass after the biobutanol production process. This study also shows the efficient usage of agricultural and microbial wastes in different areas based on zero-waste applications.


Subject(s)
Clostridium beijerinckii , Coloring Agents , Clostridium beijerinckii/metabolism , Coloring Agents/metabolism , Coloring Agents/chemistry , Textiles , Biomass , Water Pollutants, Chemical/metabolism , Biodegradation, Environmental , Anthraquinones
5.
J Microbiol Methods ; 223: 106976, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38925440

ABSTRACT

Pellet production represents a critical step for several processes requiring fungal biomass, nevertheless, its optimization is seldom reported. The use of finely ground rice husk as a microcarrier and co-substrate permitted a marked increase (≈ 2.7×) in the productivity of fungal pellet production using Trametes versicolor compared to traditional production methods. The pellets show similar structure and smaller size compared to typical sole-mycelium pellets, as well as comparable laccase activity. The efficiency of the pellets for biodegradation was confirmed by the removal of the crystal violet dye, achieving significantly faster decolorization rates compared to the traditionally produced pellets. The use of these pellets during the continuous treatment of the dye in a stirred tank bioreactor resulted in 97% decolorization operating at a hydraulic residence time of 4.5 d.


Subject(s)
Biodegradation, Environmental , Bioreactors , Coloring Agents , Oryza , Oryza/microbiology , Coloring Agents/metabolism , Coloring Agents/chemistry , Bioreactors/microbiology , Laccase/metabolism , Biomass , Gentian Violet/metabolism , Gentian Violet/chemistry , Trametes/metabolism , Trametes/enzymology , Mycelium/metabolism , Polyporaceae/metabolism
6.
Molecules ; 29(12)2024 Jun 11.
Article in English | MEDLINE | ID: mdl-38930836

ABSTRACT

The development of the textile industry has negative effects on the natural environment. Cotton cultivation, dyeing fabrics, washing, and finishing require a lot of water and energy and use many chemicals. One of the most dangerous pollutants generated by the textile industry is dyes. Most of them are characterized by a complex chemical structure and an unfavorable impact on the environment. Especially azo dyes, whose decomposition by bacteria may lead to the formation of carcinogenic aromatic amines and raise a lot of concern. Using the metabolic potential of microorganisms that biodegrade dyes seems to be a promising solution for their elimination from contaminated environments. The development of omics sciences such as genomics, transcriptomics, proteomics, and metabolomics has allowed for a comprehensive approach to the processes occurring in cells. Especially multi-omics, which combines data from different biomolecular levels, providing an integrative understanding of the whole biodegradation process. Thanks to this, it is possible to elucidate the molecular basis of the mechanisms of dye biodegradation and to develop effective methods of bioremediation of dye-contaminated environments.


Subject(s)
Biodegradation, Environmental , Coloring Agents , Genomics , Metabolomics , Textiles , Coloring Agents/metabolism , Coloring Agents/chemistry , Genomics/methods , Metabolomics/methods , Textile Industry , Proteomics/methods , Bacteria/metabolism , Bacteria/genetics
7.
Biotechnol Bioeng ; 121(9): 2820-2832, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38859566

ABSTRACT

The widespread adoption of fast fashion has led to a significant waste problem associated with discarded textiles. Using proteins to color textiles can serve as a sustainable alternative to chemical dyes as well as reduce the demand for new raw materials. Here, we explore the use of chromogenic fusion proteins, consisting of a chromoprotein and a carbohydrate-binding module (CBM), as coloring agents for cellulose-based textiles such as cotton. We examined the color properties of chromoproteins AeBlue, SpisPink and Ultramarine alone and fused to CBM under various conditions. AeBlue, SpisPink and Ultramarine exhibited visible color between pH 4-9 and temperatures ranging from 4 to 45℃. Fusing CBM Clos from Clostridium thermocellum and CBM Ch2 from Trichoderma reesei to the chromoproteins had no effect on the chromoprotein color properties. Furthermore, binding assays showed that chromoprotein fusions did not affect binding of CBMs to cellulosic materials. Cotton samples bound with Ultramarine-Clos exhibited visible purple color that faded progressively over time as the samples dried. Applying 10% 8000 polyethylene glycol to cotton samples markedly preserved the color over extended periods. Overall, this work highlights the potential of chromoprotein-CBM fusions for textile dying which could be applied as a color maintenance technology or for reversible coloring of textiles for events or work wear, contributing to sustainable practices and introducing new creative opportunities for the industry.


Subject(s)
Coloring Agents , Recombinant Fusion Proteins , Textiles , Coloring Agents/chemistry , Coloring Agents/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Clostridium thermocellum/genetics , Clostridium thermocellum/metabolism , Clostridium thermocellum/chemistry , Cellulose/chemistry , Cellulose/metabolism , Hypocreales/genetics , Hypocreales/metabolism , Hypocreales/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry
8.
BMC Microbiol ; 24(1): 210, 2024 Jun 14.
Article in English | MEDLINE | ID: mdl-38877404

ABSTRACT

Efficiently mitigating and managing environmental pollution caused by the improper disposal of dyes and effluents from the textile industry is of great importance. This study evaluated the effectiveness of Streptomyces albidoflavus 3MGH in decolorizing and degrading three different azo dyes, namely Reactive Orange 122 (RO 122), Direct Blue 15 (DB 15), and Direct Black 38 (DB 38). Various analytical techniques, such as Fourier Transform Infrared (FTIR) spectroscopy, High-Performance Liquid Chromatography (HPLC), and Gas Chromatography-Mass Spectrometry (GC-MS) were used to analyze the degraded byproducts of the dyes. S. albidoflavus 3MGH demonstrated a strong capability to decolorize RO 122, DB 15, and DB 38, achieving up to 60.74%, 61.38%, and 53.43% decolorization within 5 days at a concentration of 0.3 g/L, respectively. The optimal conditions for the maximum decolorization of these azo dyes were found to be a temperature of 35 °C, a pH of 6, sucrose as a carbon source, and beef extract as a nitrogen source. Additionally, after optimization of the decolorization process, treatment with S. albidoflavus 3MGH resulted in significant reductions of 94.4%, 86.3%, and 68.2% in the total organic carbon of RO 122, DB 15, and DB 38, respectively. After the treatment process, we found the specific activity of the laccase enzyme, one of the mediating enzymes of the degradation mechanism, to be 5.96 U/mg. FT-IR spectroscopy analysis of the degraded metabolites showed specific changes and shifts in peaks compared to the control samples. GC-MS analysis revealed the presence of metabolites such as benzene, biphenyl, and naphthalene derivatives. Overall, this study demonstrated the potential of S. albidoflavus 3MGH for the effective decolorization and degradation of different azo dyes. The findings were validated through various analytical techniques, shedding light on the biodegradation mechanism employed by this strain.


Subject(s)
Azo Compounds , Biodegradation, Environmental , Coloring Agents , Streptomyces , Streptomyces/metabolism , Azo Compounds/metabolism , Azo Compounds/chemistry , Coloring Agents/metabolism , Coloring Agents/chemistry , Spectroscopy, Fourier Transform Infrared/methods , Textiles , Gas Chromatography-Mass Spectrometry , Hydrogen-Ion Concentration , Temperature , Textile Industry , Water Pollutants, Chemical/metabolism , Chromatography, High Pressure Liquid , Carbon/metabolism
9.
PeerJ ; 12: e17467, 2024.
Article in English | MEDLINE | ID: mdl-38827301

ABSTRACT

Dye-decolorizing peroxidases (DyPs) (E.C. 1.11.1.19) are heme peroxidases that catalyze oxygen transfer reactions similarly to oxygenases. DyPs utilize hydrogen peroxide (H2O2) both as an electron acceptor co-substrate and as an electron donor when oxidized to their respective radicals. The production of both DyPs and lignin-modifying enzymes (LMEs) is regulated by the carbon source, although less readily metabolizable carbon sources do improve LME production. The present study analyzed the effect of glycerol on Pleurotus ostreatus growth, total DyP activity, and the expression of three Pleos-dyp genes (Pleos-dyp1, Pleos-dyp2 and Pleos-dyp4), via real-time RT-qPCR, monitoring the time course of P. ostreatus cultures supplemented with either glycerol or glucose and Acetyl Yellow G (AYG) dye. The results obtained indicate that glycerol negatively affects P. ostreatus growth, giving a biomass production of 5.31 and 5.62 g/L with respective growth rates (micra; m) of 0.027 and 0.023 h-1 for fermentations in the absence and presence of AYG dye. In contrast, respective biomass production levels of 7.09 and 7.20 g/L and growth rates (µ) of 0.033 and 0.047 h-1 were observed in equivalent control fermentations conducted with glucose in the absence and presence of AYG dye. Higher DyP activity levels, 4,043 and 4,902 IU/L, were obtained for fermentations conducted on glycerol, equivalent to 2.6-fold and 3.16-fold higher than the activity observed when glucose is used as the carbon source. The differential regulation of the DyP-encoding genes in P. ostreatus were explored, evaluating the carbon source, the growth phase, and the influence of the dye. The global analysis of the expression patterns throughout the fermentation showed the up- and down- regulation of the three Pleos-dyp genes evaluated. The highest induction observed for the control media was that found for the Pleos-dyp1 gene, which is equivalent to an 11.1-fold increase in relative expression (log2) during the stationary phase of the culture (360 h), and for the glucose/AYG media was Pleos-dyp-4 with 8.28-fold increase after 168 h. In addition, glycerol preferentially induced the Pleos-dyp1 and Pleos-dyp2 genes, leading to respective 11.61 and 4.28-fold increases after 144 h. After 360 and 504 h of culture, 12.86 and 4.02-fold increases were observed in the induction levels presented by Pleos-dyp1 and Pleos-dyp2, respectively, in the presence of AYG. When transcription levels were referred to those found in the control media, adding AYG led to up-regulation of the three dyp genes throughout the fermentation. Contrary to the fermentation with glycerol, where up- and down-regulation was observed. The present study is the first report describing the effect of a less-metabolizable carbon source, such as glycerol, on the differential expression of DyP-encoding genes and their corresponding activity.


Subject(s)
Coloring Agents , Glycerol , Pleurotus , Glycerol/metabolism , Glycerol/pharmacology , Pleurotus/genetics , Pleurotus/enzymology , Pleurotus/growth & development , Pleurotus/metabolism , Coloring Agents/metabolism , Carbon/metabolism , Gene Expression Regulation, Fungal/drug effects , Peroxidases/genetics , Peroxidases/metabolism , Glucose/metabolism
10.
Chemosphere ; 361: 142489, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38825247

ABSTRACT

Microorganisms have great potential for bioremediation as they have powerful enzymes and machineries that can transform xenobiotics. The use of a microbial consortium provides more advantages in application point of view than pure cultures due to cross-feeding, adaptations, functional redundancies, and positive interactions among the organisms. In this study, we screened about 107 isolates for their ability to degrade dyes in aerobic conditions and without additional carbon source. From our screening results, we finally limited our synthetic consortium to Gordonia and Rhodococcus isolates. The synthetic consortium was trained and optimized for azo dye degradation using sequential treatment of small aromatic compounds such as phenols that act as selective pressure agents. After four rounds of optimization with different aims for each round, the consortium was able to decolorize and degrade various dyes after 48 h (80%-100% for brilliant black bn, methyl orange, and chromotrop 2b; 50-70% for orange II and reactive orange 16; 15-30% for chlorazol black e, reactive red 120, and allura red ac). Through rational approaches, we can show that treatment with phenolic compounds at micromolar dosages can significantly improve the degradation of bulky dyes and increase its substrate scope. Moreover, our selective pressure approach led to the production of various dye-degrading enzymes as azoreductase, laccase-like, and peroxidase-like activities were detected from the phenol-treated consortium. Evidence of degradation was also shown as metabolites arising from the degradation of methyl red and brilliant black bn were detected using HPLC and LC-MS analysis. Therefore, this study establishes the importance of rational and systematic screening and optimization of a consortium. Not only can this approach be applied to dye degradation, but this study also offers insights into how we can fully maximize microbial consortium activity for other applications, especially in biodegradation and biotransformation.


Subject(s)
Azo Compounds , Biodegradation, Environmental , Coloring Agents , Microbial Consortia , Rhodococcus , Coloring Agents/chemistry , Coloring Agents/metabolism , Azo Compounds/chemistry , Azo Compounds/metabolism , Rhodococcus/metabolism , Gordonia Bacterium/metabolism , Water Pollutants, Chemical/metabolism , Water Pollutants, Chemical/chemistry , Phenols/metabolism , Phenols/chemistry , Nitroreductases/metabolism
11.
Bioresour Technol ; 404: 130916, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38823560

ABSTRACT

In this study, modified polyamide fibers were used as biocarriers to enrich dense biofilms in a multi-stage biological contact oxidation reactor (MBCOR) in which partitioned wastewater treatment zone (WTZ) and bioaugmentation zone (BAZ) were established to enhance the removal of methyl orange (MO) and its metabolites while minimizing sludge yields. WTZ exhibited high biomass loading capacity (5.75 ± 0.31 g/g filler), achieving MO removal rate ranging from 68 % to 86 % under different aeration condition within 8 h in which the most dominant genus Chlorobium played an important role. In the BAZ, Pseudoxanthomonas was the dominant genus while carbon starvation stimulated the enrichment of chemoheterotrophy and aerobic_chemoheterotrophy genes thereby enhanced the microbial utilization of cell-released substrates, MO as well as its metabolic intermediates. These results revealed the mechanism bioaugmentation on MBCOR in effectively eliminating both MO and its metabolites.


Subject(s)
Biodegradation, Environmental , Bioreactors , Coloring Agents , Oxidation-Reduction , Wastewater , Water Purification , Wastewater/chemistry , Coloring Agents/metabolism , Coloring Agents/chemistry , Water Purification/methods , Azo Compounds/metabolism , Azo Compounds/chemistry , Textiles , Textile Industry , Water Pollutants, Chemical/metabolism , Biomass , Sewage/microbiology , Waste Disposal, Fluid/methods
12.
Protein Sci ; 33(7): e5073, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38864770

ABSTRACT

A common evolutionary mechanism in biology to drive function is protein oligomerization. In prokaryotes, the symmetrical assembly of repeating protein units to form homomers is widespread, yet consideration in vitro of whether such assemblies have functional or mechanistic consequences is often overlooked. Dye-decolorizing peroxidases (DyPs) are one such example, where their dimeric α + ß barrel units can form various oligomeric states, but the oligomer influence, if any, on mechanism and function has received little attention. In this work, we have explored the oligomeric state of three DyPs found in Streptomyces lividans, each with very different mechanistic behaviors in their reactions with hydrogen peroxide and organic substrates. Using analytical ultracentrifugation, we reveal that except for one of the A-type DyPs where only a single sedimenting species is detected, oligomer states ranging from homodimers to dodecamers are prevalent in solution. Using cryo-EM on preparations of the B-type DyP, we determined a 3.02 Å resolution structure of a hexamer assembly that corresponds to the dominant oligomeric state in solution as determined by analytical ultracentrifugation. Furthermore, cryo-EM data detected sub-populations of higher-order oligomers, with one of these formed by an arrangement of two B-type DyP hexamers to give a dodecamer assembly. Our solution and structural insights of these oligomer states provide a new framework to consider previous mechanistic studies of these DyP members and are discussed in terms of long-range electron transfer for substrate oxidation and in the "storage" of oxidizable equivalents on the heme until a two-electron donor is available.


Subject(s)
Coloring Agents , Oxidation-Reduction , Peroxidases , Protein Multimerization , Streptomyces lividans , Streptomyces lividans/enzymology , Peroxidases/chemistry , Peroxidases/metabolism , Coloring Agents/chemistry , Coloring Agents/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Models, Molecular , Substrate Specificity , Cryoelectron Microscopy , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/metabolism
13.
Arch Biochem Biophys ; 757: 110025, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38740275

ABSTRACT

Drug metabolism by human gut microbes is often exemplified by azo bond reduction in the anticolitic prodrug sulfasalazine. Azoreductase activity is often found in incubations with cell cultures or ex vivo gut microbiome samples and contributes to the xenobiotic metabolism of drugs and food additives. Applying metagenomic studies to personalized medicine requires knowledge of the genes responsible for sulfasalazine and other drug metabolism, and candidate genes and proteins for drug modifications are understudied. A representative gut-abundant azoreductase from Anaerotignum lactatifermentan DSM 14214 efficiently reduces sulfasalazine and another drug, phenazopyridine, but could not reduce all azo-bonded drugs in this class. We used enzyme kinetics to characterize this enzyme for its NADH-dependent reduction of these drugs and food additives and performed computational docking to provide the groundwork for understanding substrate specificity in this family. We performed an analysis of the Flavodoxin-like fold InterPro family (IPR003680) by computing a sequence similarity network to classify distinct subgroups of the family and then performed chemically-guided functional profiling to identify proteins that are abundant in the NIH Human Microbiome Project dataset. This strategy aims to reduce the number of unique azoreductases needed to characterize one protein family in the diverse set of potential drug- and dye-modifying activities found in the human gut microbiome.


Subject(s)
Gastrointestinal Microbiome , NADH, NADPH Oxidoreductases , Nitroreductases , Humans , Nitroreductases/metabolism , Nitroreductases/genetics , NADH, NADPH Oxidoreductases/metabolism , NADH, NADPH Oxidoreductases/genetics , NADH, NADPH Oxidoreductases/chemistry , Coloring Agents/metabolism , Molecular Docking Simulation , Substrate Specificity , Sulfasalazine , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Kinetics , Clostridiales/enzymology , Clostridiales/genetics , Azo Compounds/metabolism , Azo Compounds/chemistry
14.
Bioresour Technol ; 403: 130796, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38703957

ABSTRACT

The novel recombinant Escherichia coli strain was construct through cell surface display for the treatment of cobalt contaminated wastewater and dye contaminated wastewater. First, structural analysis of known cobalt binding peptide was conducted and core binding sites were figured out which showing better cobalt binding ability. The cobalt peptides were attached to OmpC to construct cobalt adsorbing recombinant Escherichia coli. The recombinant strain efficiently absorbed and retrieved cobalt from cobalt wastewater by adsorbing 1895 µmol/g DCW of cobalt. Following adsorption, cobalt nanoparticles were synthesized through thermal decomposition of cobalt adsorbed recombinant strain at 500˚C. The nanoparticles exhibited noteworthy photocatalytic properties, demonstrating a substantial capacity for degrading dyes when used as a catalyst at a concentration of 10 mg/dl. These results presenting potential solutions for effective and environmentally friendly approaches to address cobalt and dye contaminated wastewater treatment process.


Subject(s)
Cobalt , Coloring Agents , Escherichia coli , Wastewater , Water Pollutants, Chemical , Water Purification , Cobalt/chemistry , Wastewater/chemistry , Escherichia coli/metabolism , Coloring Agents/metabolism , Coloring Agents/chemistry , Water Pollutants, Chemical/metabolism , Water Purification/methods , Adsorption , Catalysis , Biodegradation, Environmental
15.
PeerJ ; 12: e17442, 2024.
Article in English | MEDLINE | ID: mdl-38818456

ABSTRACT

Confronting the environmental threat posed by textile dyes, this study highlights bioremediation as a pivotal solution to mitigate the impacts of Crystal Violet, a widely-utilized triphenylmethane dye known for its mutagenic and mitotic toxicity. We isolated and identified several bacterial strains capable of degrading Crystal Violet under various environmental conditions. Newly identified strains, including Mycolicibacterium nivoides, Chryseobacterium sp., Agrobacterium rhizogenes, Pseudomonas crudilactis, and Pseudomonas koreensis demonstrated significant decolorization activity of Crystal Violet, complementing the already known capabilities of Stenotrophomonas maltophilia. Initial experiments using crude extracts confirmed their degradation potential, followed by detailed studies that investigated the impact of different pH levels and temperatures on some strains' degradation efficiency. Depending on the bacteria, the degree of activity change according to pH and temperature was different. At 37 °C, Chryseobacterium sp. and Stenotrophomonas maltophilia exhibited higher degradation activity compared to 25 °C, while Pseudomonas crudilactis and Mycolicibacterium nivoides did not exhibit a statistically significant difference between the two temperatures. Mycolicibacterium nivoides performed optimally at pH 8, while Pseudomonas crudilactis showed high activity at pH 5. Stenotrophomonas maltophilia's activity remained consistent across the pH range. These findings not only underscore the effectiveness of these bacteria as agents for Crystal Violet degradation but also pave the way for their application in large-scale bioremediation processes for the treatment of textile effluents, marking them as vital to environmental sustainability efforts.


Subject(s)
Biodegradation, Environmental , Gentian Violet , Gentian Violet/metabolism , Hydrogen-Ion Concentration , Temperature , Pseudomonas/metabolism , Pseudomonas/genetics , Stenotrophomonas maltophilia/metabolism , Coloring Agents/metabolism , Bacteria/metabolism , Bacteria/genetics
16.
Int J Phytoremediation ; 26(11): 1716-1727, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38745398

ABSTRACT

Cocos nucifera, commonly known as coconut is rich in coir dust (CCD) at its outer surface, which is a very significant agri waste used as biosorbent for wastewater treatment. The current work addresses use of CCD for removal of hazardous Sunset Yellow dye (SY) FCF widely used as coloring agent in food industry, from wastewater. The uptake capacity in batch and column mode is 82 mg/g and 160 mg/g respectively. Characterization study including SEM, FTIR and BET results also supported the adsorption process. The comparative analysis with other natural biosorbents showed best results of biosorption with CCD. The output was better at high pH (10) and lower concentration of dye (5 mg/L). The kinetic study suggested pseudo second order rate revealing both adsorbate-adsorbent interdependency. The presence of covalent bonding or valence forces between the interfaces, suggested chemisorption as the rate limiting mechanism with valence forces, hydrogen bonding and pi-pi stacking being the chief forces responsible in binding of the dye molecules to the surface. The isotherm supported Langmuir model with monolayer and uniform adsorption at the interfaces. The interference test confirmed slight decrease in percent adsorption with interference from chloride and sulfate as dominating ions. The techno-economic feasibility highly recommended in field application of the substitute (net profit value, 1.256 Rs/m3, input cost, 0.052 Rs/m3). The industrial sample analysis with lab to land approach justified sustainability and commercial viability of the present work.


Facile removal of a food dye (sunset yellow, FCF) using Coconut coir dust (CCD).Uptake capacity in batch and column mode is 82 mg/g and 160 mg/g respectively.Chemisorption as the rate limiting mechanism with valence forces, hydrogen bonding and pi-pi stacking being the chief forces.Better uptake efficiency is seen at higher pH (10) and lower concentration (5mg/L).


Subject(s)
Azo Compounds , Wastewater , Water Pollutants, Chemical , Adsorption , Wastewater/chemistry , Kinetics , Water Pollutants, Chemical/metabolism , Waste Disposal, Fluid/methods , Cocos , Biodegradation, Environmental , Food Coloring Agents , Coloring Agents/metabolism , Coloring Agents/chemistry , Hydrogen-Ion Concentration , Lignin/analogs & derivatives
17.
Biotechnol Adv ; 73: 108374, 2024.
Article in English | MEDLINE | ID: mdl-38729229

ABSTRACT

Indigo is a natural dye extensively used in the global textile industry. However, the conventional synthesis of indigo using toxic compounds like aniline, formaldehyde, and hydrogen cyanide has led to environmental pollution and health risks for workers. This method also faces growing economic, sustainability, and environmental challenges. To address these issues, the concept of bio-indigo or indigo biosynthesis has been proposed as an alternative to aniline-based indigo synthesis. Among various enzymes, Flavin-containing Monooxygenases (FMOs) have shown promise in achieving a high yield of bio-indigo. However, the industrialization of indigo biosynthesis still encounters several challenges. This review focuses on the historical development of indigo biosynthesis mediated by FMOs. It highlights several factors that have hindered industrialization, including the use of unsuitable chassis (Escherichia coli), the toxicity of indole, the high cost of the substrate L-tryptophan, the water-insolubility of the product indigo, the requirement of reducing reagents such as sodium dithionite, and the relatively low yield and high cost compared to chemical synthesis. Additionally, this paper summarizes various strategies to enhance the yield of indigo synthesized by FMOs, including redundant sequence deletion, semi-rational design, cheap precursor research, NADPH regeneration, large-scale fermentation, and enhancement of water solubility of indigo.


Subject(s)
Indigo Carmine , Indigo Carmine/metabolism , Mixed Function Oxygenases/metabolism , Mixed Function Oxygenases/genetics , Oxygenases/metabolism , Oxygenases/genetics , Coloring Agents/chemistry , Coloring Agents/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism
18.
Microb Cell Fact ; 23(1): 150, 2024 May 24.
Article in English | MEDLINE | ID: mdl-38790055

ABSTRACT

BACKGROUND: Azo dyes represent a common textile dye preferred for its high stability on fabrics in various harsh conditions. Although these dyes pose high-risk levels for all biological forms, fungal laccase is known as a green catalyst for its ability to oxidize numerous dyes. METHODS: Trichoderma isolates were identified and tested for laccase production. Laccase production was optimized using Plackett-Burman Design. Laccase molecular weight and the kinetic properties of the enzyme, including Km and Vmax, pH, temperature, and ionic strength, were detected. Azo dye removal efficiency by laccase enzyme was detected for Congo red, methylene blue, and methyl orange. RESULTS: Eight out of nine Trichoderma isolates were laccase producers. Laccase production efficiency was optimized by the superior strain T. harzianum PP389612, increasing production from 1.6 to 2.89 U/ml. In SDS-PAGE, purified laccases appear as a single protein band with a molecular weight of 41.00 kDa. Km and Vmax values were 146.12 µmol guaiacol and 3.82 µmol guaiacol/min. Its activity was stable in the pH range of 5-7, with an optimum temperature range of 40 to 50 °C, optimum ionic strength of 50 mM NaCl, and thermostability properties up to 90 °C. The decolorization efficiency of laccase was increased by increasing the time and reached its maximum after 72 h. The highest efficiency was achieved in Congo red decolorization, which reached 99% after 72 h, followed by methylene blue at 72%, while methyl orange decolorization efficiency was 68.5%. CONCLUSION: Trichoderma laccase can be used as an effective natural bio-agent for dye removal because it is stable and removes colors very well.


Subject(s)
Azo Compounds , Coloring Agents , Laccase , Temperature , Laccase/metabolism , Laccase/chemistry , Laccase/isolation & purification , Azo Compounds/metabolism , Coloring Agents/metabolism , Coloring Agents/chemistry , Kinetics , Hydrogen-Ion Concentration , Congo Red/metabolism , Osmolar Concentration , Hypocreales/enzymology , Hypocreales/metabolism , Biodegradation, Environmental , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification
19.
Arch Microbiol ; 206(6): 262, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38753198

ABSTRACT

The employment of versatile bacterial strains for the efficient degradation of carcinogenic textile dyes is a sustainable technology of bioremediation for a neat, clean, and evergreen globe. The present study has explored the eco-friendly degradation of complex Reactive Green 12 azo dye to its non-toxic metabolites for safe disposal in an open environment. The bacterial degradation was performed with the variable concentrations (50, 100, 200, 400, and 500 mg/L) of Reactive Green 12 dye. The degradation and toxicity of the dye were validated by high-performance liquid chromatography, Fourier infrared spectroscopy analysis, and phytotoxicity and genotoxicity assay, respectively. The highest 97.8% decolorization was achieved within 12 h. Alternations in the peaks and retentions, thus, along with modifications in the functional groups and chemical bonds, confirmed the degradation of Reactive Green 12. The disappearance of a major peak at 1450 cm-1 corresponding to the -N=N- azo link validated the breaking of azo bonds and degradation of the parent dye. The 100% germination of Triticum aestivum seed and healthy growth of plants verified the lost toxicity of degraded dye. Moreover, the chromosomal aberration of Allium cepa root cell treatment also validated the removal of toxicity through bacterial degradation. Thereafter, for efficient degradation of textile dye, the bacterium is recommended for adaptation to the sustainable degradation of dye and wastewater for further application of degraded metabolites in crop irrigation for sustainable agriculture.


Subject(s)
Biodegradation, Environmental , Coloring Agents , Onions , Textile Industry , Triticum , Coloring Agents/metabolism , Coloring Agents/chemistry , Coloring Agents/toxicity , Triticum/microbiology , Onions/drug effects , Azo Compounds/metabolism , Azo Compounds/toxicity , Textiles , Bacteria/metabolism , Bacteria/drug effects , Bacteria/genetics , Mutagenicity Tests
20.
Ecotoxicol Environ Saf ; 279: 116450, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38768540

ABSTRACT

The purpose of this study is to evaluate the decolorization ability and detoxification effect of LAC-4 laccase on various types of single and mixed dyes, and lay a good foundation for better application of laccase in the efficient treatment of dye pollutants. The reaction system of the LAC-4 decolorizing single dyes (azo, anthraquinone, triphenylmethane, and indigo dyes, 17 dyes in total) were established. To explore the decolorization effect of the dye mixture by LAC-4, two dyes of the same type or different types were mixed at the same concentration (100 mg/L) in the reaction system containing 0.5 U laccase, and time-course decolorization were performed on the dye mixture. The combined dye mixtures consisted of azo + azo, azo + anthraquinone, azo + indigo, azo + triphenylmethane, indigo + triphenylmethane, and triphenylmethane + triphenylmethane. The results obtained in this study were as follows. Under optimal conditions of 30 °C and pH 5.0, LAC-4 (0.5 U) can efficiently decolorize four different types of dyes. The 24-hour decolorization efficiencies of LAC-4 for 800 mg/L Orange G and Acid Orange 7 (azo), Remazol Brilliant Blue R (anthraquinone), Bromophenol Blue and Methyl Green (triphenylmethane), and Indigo Carmine (indigo) were 75.94%, 93.30%, 96.56%, 99.94%, 96.37%, and 37.23%, respectively. LAC-4 could also efficiently decolorize mixed dyes with different structures. LAC-4 can achieve a decolorization efficiency of over 80% for various dye mixtures such as Orange G + Indigo Carmine (100 mg/L+100 mg/L), Reactive Orange 16 + Methyl Green (100 mg/L+100 mg/L), and Remazol Brilliant Blue R + Methyl Green (100 mg/L+100 mg/L). During the decolorization process of the mixed dyes by laccase, four different interaction relationships were observed between the dyes. Decolorization efficiencies and rates of the dyes that were difficult to be degraded by laccase could be greatly improved when mixed with other dyes. Degradable dyes could greatly enhance the ability of LAC-4 to decolorize extremely difficult-to-degrade dyes. It was also found that the decolorization efficiencies of the two dyes significantly increased after mixing. The possible mechanisms underlying the different interaction relationships were further discussed. Free, but not immobilized, LAC-4 showed a strong continuous batch decolorization ability for single dyes, two-dye mixtures, and four-dye mixtures with different structures. LAC-4 exhibited high stability, sustainable degradability, and good reusability in the continuous batch decolorization. The LAC-4-catalyzed decolorization markedly reduced or fully abolished the toxic effects of single dyes (azo, anthraquinone, and indigo dye) and mix dyes (nine dye mixtures containing four structural types of dyes) on plants. Our findings indicated that LAC-4 laccase had significant potential for use in bioremediation due to its efficient degradation and detoxification of single and mixed dyes with different structural types.


Subject(s)
Azo Compounds , Coloring Agents , Laccase , Reishi , Trityl Compounds , Coloring Agents/chemistry , Coloring Agents/toxicity , Coloring Agents/metabolism , Laccase/metabolism , Azo Compounds/toxicity , Azo Compounds/metabolism , Trityl Compounds/chemistry , Water Pollutants, Chemical/metabolism , Water Pollutants, Chemical/toxicity , Biodegradation, Environmental , Anthraquinones/chemistry , Anthraquinones/metabolism , Indigo Carmine/metabolism , Hydrogen-Ion Concentration , Water Decolorization , White
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