Atypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba.

The most studied DNA methylation pathway in plants is the RNA Directed DNA Methylation (RdDM), a conserved mechanism that involves the role of noncoding RNAs to control the expansion of the noncoding genome. Genome-wide DNA methylation levels have been reported to correlate with genome size. However, little is known about the catalog of noncoding RNAs and the impact on DNA methylation in small plant genomes with reduced noncoding regions. Because of the small length of intergenic regions in the compact genome of the carnivorous plant Utricularia gibba, we investigated its repertoire of noncoding RNA and DNA methylation landscape. Here, we report that, compared to other angiosperms, U. gibba has an unusual distribution of small RNAs and reduced global DNA methylation levels. DNA methylation was determined using a novel strategy based on long-read DNA sequencing with the Pacific Bioscience platform and confirmed by whole-genome bisulfite sequencing. Moreover, some key genes involved in the RdDM pathway may not represented by compensatory paralogs or comprise truncated proteins, for example, U. gibba DICER-LIKE 3 (DCL3), encoding a DICER endonuclease that produces 24-nt small-interfering RNAs, has lost key domains required for complete function. Our results unveil that a truncated DCL3 correlates with a decreased proportion of 24-nt small-interfering RNAs, low DNA methylation levels, and developmental abnormalities during female gametogenesis in U. gibba. Alterations in female gametogenesis are reminiscent of RdDM mutant phenotypes in Arabidopsis thaliana. It would be interesting to further study the biological implications of the DCL3 truncation in U. gibba, as it could represent an initial step in the evolution of RdDM pathway in compact genomes.

Pollination ecology of the Neotropical gesneriad Gloxinia perennis: chemical composition and temporal fluctuation of floral perfume.

Although common among orchids, pollination by perfume-gathering male euglossine bees is quite rare in other Neotropical families. In Gesneriaceae, for example, it is reported in two genera only, Drymonia and Gloxinia. Flowers of G. perennis are known to emit perfume, thereby attracting male euglossine bees as pollinators. However, detailed reports on the pollination ecology, as well as on chemistry of floral perfume of individuals in natural populations, are still missing. In this study, we report on the pollination ecology of G. perennis, focusing on the ecological significance of its floral perfume. In natural populations in Peru, we documented the floral biology and breeding system of G. perennis, as well as its interaction with flower visitors. We also characterised the chemical composition of floral perfume, as well as its timing of emission. Gloxinia perennis is self-compatible and natural pollination success is high. Spontaneous self-pollination occurs as a 'just in case strategy' when pollinators are scarce. Perfume-collecting males of Eulaema cingulata and El. meriana were identified as pollinators. The perfume bouquet of G. perennis consists of 16 compounds. (E)-Carvone epoxide (41%) and limonene (23%) are the major constituents. Perfume emission is higher at 09:00 h, matching the activity peak of Eulaema pollinators. Flowers of G. perennis have evolved a mixed strategy to ensure pollination (i.e. self- and cross-pollination), but cross-pollination is favoured. The size and behaviour of Eulaema males enables only these bees to successfully cross-pollinate G. perennis. Furthermore, G. perennis floral perfume traits (i.e. chemistry and timing of emission) have evolved to optimise the attraction of these bees.

Reproductive biology and pollination of the carnivorous Genlisea violacea (Lentibulariaceae).

Genlisea violacea is a Brazilian endemic carnivorous plant species distributed in the cerrado biome, mainly in humid environments, on sandy and oligotrophic soil or wet rocks. Studies on reproductive biology or pollination in the Lentibulariaceae are notably scarce; regarding the genus Genlisea, the current study is the first to show systematic and standardised research on reproductive biology from field studies to describe the foraging of visiting insects and determine the effective pollinators of Genlisea. We studied two populations of G. violacea through the observation of flower visitors for 4 months of the rainy and dry seasons. Stigmatic receptivity, pollen viability, and breeding system were evaluated together with histochemistry and morphological analyses of flowers. The flowers showed stigmatic receptivity of 100% in open buds and mature flowers, reducing to 80% for senescent flowers. Nearly 80% of pollen grains are viable, decreasing to 40-45% after 48 h. Nectar is produced by glandular trichomes inside the spur. Two bee species are effective pollinators: one of the genus Lasioglossum (subgenus Dialictus: Halictidae) and the other of the genus Ceratina (subgenus Ceratinula: family Apidae). Moreover, bee-like flies of the Syrphidae family may also be additional pollinators. Genlisea violacea is an allogamous and self-compatible species. The differences in flower-visiting fauna for both populations can be attributed to factors such as climate, anthropogenic effect, seasonal factors related to insects and plants, as well as the morphological variation of flowers in both populations.

Captura y selectividad del zooplancton por Utricularia foliosa (Lentibulariaceae) en la Ciénaga de Paredes, Santander, Colombia / Capture and selectivity of zooplankton by Utricularia foliosa (Lentibulariaceae) in the Ciénaga de Paredes, Santander, Colombia

ResumenLas plantas carnívoras del género Utricularia, capturan un amplio ámbito de organismos acuáticos. La mayoría se desarrollan en ambientes con carencias de nutrientes y tienen la capacidad de cambiar las condiciones de su microambiente. El objetivo de la presente investigación fue estudiar la selectividad, en la captura de zooplancton por Utricularia foliosa en la Ciénaga de Paredes; entre febrero y noviembre 2014. Se determinó si existe selección en los recursos alimentarios de la planta con el índice de Czekanowski y el grado de selección, a través de los índices de Savage e Ivlev. Se estableció la relación existente entre los patrones de captura y selección del zooplancton, con variables físicoquímicas y la disponibilidad de nutrientes en la Ciénaga. En nuestros resultados, el índice de Czekanowski evidenció selección, en los recursos alimentarios de la planta, durante todo el pulso de inundación, con valores entre 0.28 y 0.41. Se encontró selección positiva significativa, con el índice de Savage, para los géneros Lecane sp., Alona sp., Ceriodaphnia sp., y Bosmina sp. (p < 0.05). Se obtuvieron resultados similares, con el índice de Ivlev. La intensidad en la selección de los géneros varió entre periodos hidrológicos y por periodos de aguas altas y bajas. Se identificó que los cambios en la concentración de amoniaco y nitrato, además de la variación en la conductividad eléctrica de la ciénaga influencian la captura que realiza U. foliosa. Este es el primer trabajo que permite dar un acercamiento al entendimiento de la selección de recursos alimentarios dentro de la especie a través de índices de selectividad y uno de los pocos para el género.

Abstract:Utricularia is a genus of carnivorous plants that capture a wide range of aquatic organisms. Most of these plants grow in environments with nutrients deficiency and have the ability to change the conditions of their microenvironment. The aim of this research was to study the selectivity in the zooplankton capture by Utricularia foliosa in the Ciénaga de Paredes. Our study was undertaken between February and November, 2014. We tried to determine if there is selection in the plant's food resources by the Czekanowski's index, and the selection degree by the Savage and Ivlev's indexes. Additionally, we studied the possible relation between the patterns of zooplankton capture and selection, with physicochemical variables in the swamp. The Czekanowski's index showed a food selection in plant resources throughout the flood pulse, with values between 0.28 and 0.41. We also found a significant positive selection with Savage's index for Lecane sp., Alona sp., Ceriodaphnia sp., and Bosmina sp. (p < 0.05); similar results were obtained with Ivlev's index. The intensity in the selection of each captured genus varied significantly between hydrological periods and between high and low water levels in the swamp. It was possible to identify some changes in the ammonia and nitrate concentration and some variability in the electric conductivity of the swamp, which influenced the captures made by U. foliosa. This is the first paper that allows an approach to understand the selection of food resources for the species, using a selectivity index, and one of the few for the genus. Rev. Biol. Trop. 64 (3): 1297-1310. Epub 2016 September 01.

Functional decoupling between flowers and leaves in the Ameroglossum pernambucense complex can facilitate local adaptation across a pollinator and climatic heterogeneous landscape.

Decoupling between floral and leaf traits is expected in plants with specialized pollination systems to assure a precise flower-pollinator fit, irrespective of leaf variation associated with environmental heterogeneity (functional modularity). Nonetheless, developmental interactions among floral traits also decouple flowers from leaves regardless of selection pressures (developmental modularity). We tested functional modularity in the hummingbird-pollinated flowers of the Ameroglossum pernambucense complex while controlling for developmental modularity. Using two functional traits responsible for flower-pollinator fit [floral tube length (TL) and anther-nectary distance (AN)], one floral trait not linked to pollination [sepal length (SL), control for developmental modularity] and one leaf trait [leaf length (LL)], we found evidence of flower functional modularity. Covariation between TL and AN was ca. two-fold higher than the covariation of either of these traits with sepal and leaf lengths, and variations in TL and AN, important for a precise flower-pollinator fit, were smaller than SL and LL variations. Furthermore, we show that previously reported among-population variation of flowers associated with local pollinator phenotypes was independent from SL and LL variations. These results suggest that TL and AN are functionally linked to fit pollinators and sufficiently decoupled from developmentally related floral traits (SL) and vegetative traits (LL). These results support previous evidences of population differentiation due to local adaptation in the A. pernambucense complex and shed light on the role of flower-leaf decoupling for local adaptation in species distributed across biotic and abiotic heterogeneous landscapes.

[Capture and selectivity of zooplankton by Utricularia foliosa (Lentibulariaceae) in the Ciénaga de Paredes, Santander, Colombia]. / Captura y selectividad del zooplankton por Utricularia foliosa (Lentibulariaceae) en la Ciénaga de Paredes, Santander, Colombia.

Utricularia is a genus of carnivorous plants that capture a wide range of aquatic organisms. Most of these plants grow in environments with nutrients deficiency and have the ability to change the conditions of their microenvironment. The aim of this research was to study the selectivity in the zooplankton capture by Utricularia foliosa in the Ciénaga de Paredes. Our study was undertaken between February and November, 2014. We tried to determine if there is selection in the plant's food resources by the Czekanowski's index, and the selection degree by the Savage and Ivlev's indexes. Additionally, we studied the possible relationship between the patterns of zooplankton capture and selection, with physicochemical variables in the swamp. The Czekanowski's index showed a food selection in plant resources throughout the flood pulse, with values between 0.28 and 0.41. We also found a significant positive selection with Savage's index for Lecane sp., Alona sp., Ceriodaphnia sp., and Bosmina sp. (p < 0.05); similar results were obtained with Ivlev's index. The intensity in the selection of each captured genus varied significantly between hydrological periods and between high and low water levels in the swamp. It was possible to identify some changes in the ammonia and nitrate concentration and some variability in the electric conductivity of the swamp, which influenced the captures made by U. foliosa. This is the first paper that allows an approach to understand the selection of food resources for the species, using a selectivity index, and one of the few for the genus.